Wall clock time and date at job start Tue Mar 31 2020 21:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.52211 * 2 1 4 4 C 1.53187 * 109.50249 * 120.07985 * 2 1 3 5 5 N 1.46926 * 108.89929 * 174.66094 * 4 2 1 6 6 C 1.34769 * 120.63331 * 126.34257 * 5 4 2 7 7 O 1.21279 * 120.00102 * 357.52365 * 6 5 4 8 8 C 1.50699 * 120.00062 * 177.52212 * 6 5 4 9 9 C 1.52998 * 109.54423 * 304.83370 * 8 6 5 10 10 C 1.53001 * 117.49957 * 358.51188 * 9 8 6 11 11 C 1.52999 * 117.49654 * 289.85346 * 9 8 6 12 12 C 1.53178 * 109.54367 * 184.65508 * 8 6 5 13 13 C 1.53288 * 109.06498 * 297.02813 * 12 8 6 14 14 O 1.42903 * 109.45928 * 302.44663 * 13 12 8 15 15 C 1.42902 * 114.09635 * 61.16035 * 14 13 12 16 16 C 1.53098 * 109.41594 * 298.83622 * 15 14 13 17 17 C 1.46926 * 118.73704 * 306.32374 * 5 4 2 18 18 C 1.53191 * 108.77924 * 53.60179 * 17 5 4 19 19 C 1.53043 * 109.31207 * 305.37178 * 18 17 5 20 20 H 1.08994 * 109.45836 * 301.35066 * 19 18 17 21 21 N 1.46508 * 109.45852 * 181.37990 * 19 18 17 22 22 C 1.36934 * 119.99709 * 84.99758 * 21 19 18 23 23 H 1.07998 * 120.00636 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99834 * 180.02562 * 22 21 19 25 25 N 1.31622 * 119.99962 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00082 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46899 * 89.99940 * 26 24 22 28 28 H 1.48501 * 109.47095 * 210.00026 * 26 24 22 29 29 H 1.48499 * 109.47097 * 330.00296 * 26 24 22 30 30 H 1.08999 * 109.47247 * 299.91413 * 1 2 3 31 31 H 1.08999 * 109.47199 * 59.92151 * 1 2 3 32 32 H 1.09008 * 109.46901 * 179.91601 * 1 2 3 33 33 H 1.09002 * 109.58687 * 54.79956 * 4 2 1 34 34 H 1.09005 * 109.59024 * 294.52176 * 4 2 1 35 35 H 1.08999 * 115.55120 * 144.18531 * 9 8 6 36 36 H 1.09008 * 117.49608 * 359.97438 * 10 9 8 37 37 H 1.08996 * 117.50215 * 145.02149 * 10 9 8 38 38 H 1.09005 * 117.49734 * 214.97672 * 11 9 8 39 39 H 1.08998 * 117.49872 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.52079 * 57.01974 * 12 8 6 41 41 H 1.09004 * 109.52231 * 177.21121 * 12 8 6 42 42 H 1.08993 * 109.45588 * 182.44769 * 13 12 8 43 43 H 1.09005 * 109.46291 * 62.44425 * 13 12 8 44 44 H 1.09005 * 109.47802 * 178.85740 * 15 14 13 45 45 H 1.08999 * 109.49676 * 58.82882 * 15 14 13 46 46 H 1.09002 * 109.51830 * 297.70942 * 16 15 14 47 47 H 1.09000 * 109.57581 * 177.55045 * 16 15 14 48 48 H 1.08992 * 109.59205 * 173.39314 * 17 5 4 49 49 H 1.09006 * 109.58294 * 293.67934 * 17 5 4 50 50 H 1.09001 * 109.49185 * 65.31635 * 18 17 5 51 51 H 1.08991 * 109.50210 * 185.41465 * 18 17 5 52 52 H 0.96999 * 120.00230 * 265.00085 * 21 19 18 53 53 H 0.97000 * 119.99956 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 1.2495 5 7 3.5049 -0.8289 1.1730 6 6 4.2790 -0.3851 2.1830 7 8 3.7714 0.1475 3.1472 8 6 5.7753 -0.5506 2.1144 9 6 6.1174 -2.0249 1.8898 10 6 4.9546 -3.0166 1.8158 11 6 5.8639 -2.9931 3.0470 12 6 6.4044 -0.0728 3.4268 13 6 6.1217 1.4236 3.6018 14 8 6.6371 2.1401 2.4778 15 6 6.0508 1.7668 1.2292 16 6 6.3308 0.2863 0.9580 17 6 4.1084 -1.4275 -0.0253 18 6 3.5767 -0.6973 -1.2626 19 6 2.0466 -0.7256 -1.2483 20 1 1.7027 -1.7597 -1.2348 21 7 1.5349 -0.0566 -2.4471 22 6 1.4063 -0.7545 -3.6183 23 1 1.6824 -1.7978 -3.6584 24 6 0.9220 -0.1206 -4.7543 25 7 0.7989 -0.7912 -5.8802 26 14 0.4451 1.6842 -4.6853 27 1 1.6243 2.5211 -5.0234 28 1 -0.6438 1.9461 -5.6604 29 1 -0.0243 2.0201 -3.3170 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6054 -1.7216 1.2980 34 1 1.7616 -0.1592 2.1391 35 1 6.9824 -2.2152 1.2546 36 1 3.9459 -2.6187 1.9276 37 1 5.0549 -3.8596 1.1323 38 1 6.5620 -3.8207 3.1729 39 1 5.4538 -2.5797 3.9685 40 1 5.9732 -0.6270 4.2604 41 1 7.4813 -0.2385 3.3960 42 1 6.6036 1.7801 4.5121 43 1 5.0459 1.5842 3.6730 44 1 6.4817 2.3705 0.4304 45 1 4.9741 1.9317 1.2691 46 1 7.4063 0.1278 0.8775 47 1 5.8480 -0.0122 0.0275 48 1 5.1925 -1.3253 0.0215 49 1 3.8430 -2.4834 -0.0795 50 1 3.9215 0.3367 -1.2508 51 1 3.9414 -1.1927 -2.1622 52 1 1.2873 0.8805 -2.4113 53 1 0.4601 -0.3483 -6.6739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036119531.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:49 Heat of formation + Delta-G solvation = -39.344408 kcal Electronic energy + Delta-G solvation = -32559.583331 eV Core-core repulsion = 28625.371022 eV Total energy + Delta-G solvation = -3934.212309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.76110 -39.99189 -38.71433 -38.21060 -36.25183 -34.52528 -34.00693 -33.16126 -32.00383 -31.51960 -28.16138 -27.21755 -26.28712 -24.95602 -24.24111 -23.59055 -22.80167 -22.29878 -22.06295 -21.15880 -19.81091 -19.22715 -17.92493 -17.53821 -17.16979 -16.89326 -16.77946 -16.46735 -16.03827 -15.83969 -15.61524 -15.23927 -15.11126 -14.96427 -14.68815 -14.44625 -14.27484 -14.15790 -13.70838 -13.56295 -13.35835 -13.29457 -12.97252 -12.92684 -12.77057 -12.68117 -12.48704 -12.31503 -12.22625 -12.05071 -11.98080 -11.93940 -11.87449 -11.75046 -11.49505 -11.24558 -11.18388 -10.95123 -10.91349 -10.43717 -10.28644 -9.60997 -9.25555 -7.99409 -5.30850 1.38193 1.39047 1.46475 1.53743 1.95557 2.49461 2.77228 2.91328 3.30257 3.33104 3.51212 3.55663 3.67619 3.75841 3.85756 3.93510 3.99849 4.05337 4.08742 4.18938 4.22363 4.29084 4.34495 4.36800 4.45198 4.55712 4.58631 4.63307 4.66797 4.72722 4.75986 4.77305 4.79748 4.84745 4.87816 4.93526 4.99499 5.04414 5.04667 5.09166 5.16230 5.19316 5.24296 5.28370 5.29447 5.36210 5.48539 5.62486 5.81442 6.20776 6.24889 6.39593 7.11085 7.11716 7.88264 8.06156 9.22193 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.003670 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.950500 B = 7628.441366 C = 7959.315126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.059 0.941 4 C 0.123 3.877 5 N -0.598 5.598 6 C 0.525 3.475 7 O -0.573 6.573 8 C -0.044 4.044 9 C -0.145 4.145 10 C -0.197 4.197 11 C -0.172 4.172 12 C -0.118 4.118 13 C 0.043 3.957 14 O -0.396 6.396 15 C 0.056 3.944 16 C -0.151 4.151 17 C 0.102 3.898 18 C -0.146 4.146 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.748 5.748 22 C -0.216 4.216 23 H 0.063 0.937 24 C -0.060 4.060 25 N -0.984 5.984 26 Si 0.944 3.056 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.256 1.256 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.026 0.974 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.086 0.914 50 H 0.054 0.946 51 H 0.066 0.934 52 H 0.361 0.639 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -1.893 20.425 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.078 0.922 4 C 0.000 4.000 5 N -0.329 5.329 6 C 0.315 3.685 7 O -0.454 6.454 8 C -0.047 4.047 9 C -0.163 4.163 10 C -0.234 4.234 11 C -0.209 4.209 12 C -0.156 4.156 13 C -0.033 4.033 14 O -0.315 6.315 15 C -0.021 4.021 16 C -0.188 4.188 17 C -0.020 4.020 18 C -0.187 4.187 19 C 0.076 3.924 20 H 0.066 0.934 21 N -0.390 5.390 22 C -0.347 4.347 23 H 0.081 0.919 24 C -0.251 4.251 25 N -0.635 5.635 26 Si 0.773 3.227 27 H -0.209 1.209 28 H -0.228 1.228 29 H -0.181 1.181 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.155 0.845 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.127 0.873 45 H 0.045 0.955 46 H 0.124 0.876 47 H 0.115 0.885 48 H 0.136 0.864 49 H 0.104 0.896 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.194 0.806 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.115 -1.658 20.807 24.652 hybrid contribution -1.053 0.954 -0.801 1.631 sum 12.062 -0.704 20.007 23.372 Atomic orbital electron populations 1.21631 0.93975 1.02280 1.01387 1.21693 0.96650 0.99332 0.94501 0.92235 1.21585 0.79445 1.01242 0.97695 1.48236 1.06550 1.59674 1.18420 1.20864 0.89841 0.76239 0.81591 1.90600 1.75955 1.44665 1.34149 1.20415 0.89841 0.96171 0.98240 1.22354 1.01732 0.87953 1.04288 1.23711 0.96050 1.01949 1.01704 1.23088 1.03386 1.01675 0.92725 1.22013 1.01789 0.96084 0.95726 1.22968 0.99690 0.91608 0.89027 1.87875 1.64809 1.63202 1.15628 1.22630 0.96813 0.95908 0.86714 1.22615 1.04082 0.94407 0.97723 1.22444 1.00030 0.97575 0.81928 1.22515 0.97837 1.00612 0.97737 1.20452 0.92015 0.95388 0.84558 0.93368 1.42796 1.78546 1.10094 1.07557 1.19007 1.33764 0.94725 0.87254 0.91925 1.25338 1.02752 1.01603 0.95442 1.69860 1.54649 1.37565 1.01433 0.85575 0.77576 0.81860 0.77727 1.20880 1.22754 1.18063 0.91517 0.93807 0.92265 0.90094 0.89824 0.84467 0.88683 0.86968 0.86909 0.89995 0.90535 0.88801 0.87913 0.92753 0.87269 0.95532 0.87586 0.88492 0.86402 0.89573 0.92697 0.91523 0.80581 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.04 71.98 0.65 -3.18 16 2 C -0.10 -2.91 2.47 -10.61 -0.03 -2.94 16 3 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 4 C 0.12 3.04 5.71 86.36 0.49 3.53 16 5 N -0.60 -13.71 1.59 -818.92 -1.30 -15.00 16 6 C 0.52 12.64 4.12 87.66 0.36 13.00 16 7 O -0.57 -17.38 13.11 -3.03 -0.04 -17.42 16 8 C -0.04 -0.80 0.37 -52.81 -0.02 -0.81 16 9 C -0.15 -2.03 3.86 -10.79 -0.04 -2.07 16 10 C -0.20 -3.03 6.63 30.62 0.20 -2.83 16 11 C -0.17 -2.40 9.65 30.62 0.30 -2.10 16 12 C -0.12 -2.16 4.24 30.75 0.13 -2.03 16 13 C 0.04 0.96 6.56 72.08 0.47 1.43 16 14 O -0.40 -9.59 10.77 -148.98 -1.60 -11.19 16 15 C 0.06 1.22 6.62 72.01 0.48 1.70 16 16 C -0.15 -2.61 4.54 30.69 0.14 -2.47 16 17 C 0.10 2.14 3.45 86.36 0.30 2.44 16 18 C -0.15 -4.19 5.46 30.67 0.17 -4.02 16 19 C 0.18 6.19 2.21 45.12 0.10 6.29 16 20 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.75 -32.41 4.23 -322.31 -1.36 -33.77 16 22 C -0.22 -11.60 10.41 84.04 0.87 -10.72 16 23 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 24 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 25 N -0.98 -61.55 13.97 21.65 0.30 -61.25 16 26 Si 0.94 44.81 27.74 68.60 1.90 46.71 16 27 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 29 H -0.26 -11.06 6.52 99.48 0.65 -10.41 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.45 7.40 -2.39 -0.02 1.43 16 32 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.21 7.00 -2.38 -0.02 2.19 16 35 H 0.14 1.41 8.03 -2.39 -0.02 1.39 16 36 H 0.10 1.85 4.86 -2.38 -0.01 1.84 16 37 H 0.11 1.45 8.07 -2.39 -0.02 1.43 16 38 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.08 1.36 7.04 -2.39 -0.02 1.34 16 40 H 0.08 1.44 6.84 -2.39 -0.02 1.42 16 41 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.50 5.64 -2.38 -0.01 1.48 16 44 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.03 0.69 7.38 -2.39 -0.02 0.67 16 46 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.10 1.66 4.74 -2.39 -0.01 1.65 16 48 H 0.12 2.01 3.01 -2.39 -0.01 2.00 16 49 H 0.09 1.67 6.63 -2.38 -0.02 1.65 16 50 H 0.05 1.61 8.01 -2.39 -0.02 1.59 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.36 15.61 5.38 -92.71 -0.50 15.11 16 53 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.87 378.84 3.29 -64.58 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.35 Total: 35.10 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.04 Total: -7.75 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -2.36 Total: -110.03 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.64 Total: -28.62 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Total: -67.87 3.29 -64.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036119531.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.235 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds