Wall clock time and date at job start Tue Mar 31 2020 21:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.52527 * 2 1 4 4 C 1.53191 * 109.49886 * 120.08510 * 2 1 3 5 5 N 1.46925 * 108.77726 * 174.58398 * 4 2 1 6 6 C 1.34777 * 120.63182 * 126.36816 * 5 4 2 7 7 O 1.21279 * 119.99706 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99995 * 180.02562 * 6 5 4 9 9 C 1.53867 * 113.59797 * 179.97438 * 8 6 5 10 10 C 1.53323 * 87.03672 * 139.61526 * 9 8 6 11 11 C 1.53498 * 87.48967 * 334.89644 * 10 9 8 12 12 C 1.52821 * 113.61919 * 220.07107 * 10 9 8 13 13 C 1.53279 * 108.87341 * 282.21263 * 12 10 9 14 14 O 1.42898 * 109.33026 * 304.68530 * 13 12 10 15 15 C 1.42894 * 114.35567 * 62.99552 * 14 13 12 16 16 C 1.52835 * 113.62010 * 89.65438 * 10 9 8 17 17 C 1.46929 * 118.73715 * 306.64370 * 5 4 2 18 18 C 1.52764 * 109.00846 * 53.30991 * 17 5 4 19 19 C 1.53033 * 109.38123 * 305.58679 * 18 17 5 20 20 H 1.09000 * 109.46023 * 181.25999 * 19 18 17 21 21 N 1.46502 * 109.46323 * 301.21845 * 19 18 17 22 22 C 1.36933 * 120.00119 * 275.07463 * 21 19 18 23 23 H 1.08005 * 119.99903 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99920 * 179.97438 * 22 21 19 25 25 N 1.31614 * 119.99841 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99893 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47081 * 89.99777 * 26 24 22 28 28 H 1.48499 * 109.47084 * 209.99531 * 26 24 22 29 29 H 1.48503 * 109.47042 * 330.00173 * 26 24 22 30 30 H 1.09002 * 109.46956 * 299.91979 * 1 2 3 31 31 H 1.09005 * 109.46990 * 59.91110 * 1 2 3 32 32 H 1.08993 * 109.47733 * 179.91552 * 1 2 3 33 33 H 1.08996 * 109.58451 * 54.79684 * 4 2 1 34 34 H 1.08997 * 109.58371 * 294.37205 * 4 2 1 35 35 H 1.09001 * 112.84185 * 48.84792 * 8 6 5 36 36 H 1.09002 * 113.63816 * 254.17325 * 9 8 6 37 37 H 1.09004 * 113.63793 * 25.06009 * 9 8 6 38 38 H 1.09000 * 113.55251 * 270.59301 * 11 10 9 39 39 H 1.09002 * 113.77142 * 139.65213 * 11 10 9 40 40 H 1.09000 * 109.57447 * 42.02750 * 12 10 9 41 41 H 1.09006 * 109.57434 * 162.39717 * 12 10 9 42 42 H 1.09000 * 109.48994 * 184.73058 * 13 12 10 43 43 H 1.08995 * 109.51554 * 64.65947 * 13 12 10 44 44 H 1.08992 * 109.49758 * 177.05078 * 15 14 13 45 45 H 1.08998 * 109.51630 * 56.97447 * 15 14 13 46 46 H 1.08989 * 109.57248 * 197.60949 * 16 10 9 47 47 H 1.09003 * 109.56957 * 317.97395 * 16 10 9 48 48 H 1.09008 * 109.58281 * 173.14095 * 17 5 4 49 49 H 1.08993 * 109.58771 * 293.56782 * 17 5 4 50 50 H 1.08994 * 109.56120 * 185.55000 * 18 17 5 51 51 H 1.08999 * 109.38438 * 65.51342 * 18 17 5 52 52 H 0.97000 * 119.99678 * 95.06437 * 21 19 18 53 53 H 0.97002 * 119.99730 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5046 -0.8293 1.1695 6 6 4.2812 -0.3858 2.1778 7 8 3.7732 0.1055 3.1634 8 6 5.7807 -0.5004 2.0805 9 6 6.5217 0.0509 3.3111 10 6 7.4638 -1.1520 3.1836 11 6 6.3192 -1.8873 2.4727 12 6 7.8513 -1.7711 4.5260 13 6 8.9237 -0.8960 5.1845 14 8 10.0241 -0.7401 4.2863 15 6 9.7006 -0.0637 3.0699 16 6 8.6738 -0.8900 2.2875 17 6 4.1054 -1.4217 -0.0334 18 6 3.5707 -0.6950 -1.2661 19 6 2.0408 -0.7230 -1.2484 20 1 1.6581 -0.2244 -2.1389 21 7 1.5782 -2.1130 -1.2310 22 6 1.4480 -2.8061 -2.4048 23 1 1.6860 -2.3279 -3.3435 24 6 1.0102 -4.1233 -2.3882 25 7 0.7207 -4.7061 -1.2442 26 14 0.8320 -5.0685 -3.9894 27 1 2.1096 -5.7578 -4.3022 28 1 -0.2523 -6.0738 -3.8527 29 1 0.4972 -4.1252 -5.0864 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6052 -1.7216 1.2979 34 1 1.7638 -0.1580 2.1388 35 1 6.1727 -0.1301 1.1332 36 1 7.0101 1.0092 3.1341 37 1 5.9229 0.0425 4.2219 38 1 5.6648 -2.4342 3.1515 39 1 6.6435 -2.4868 1.6220 40 1 6.9745 -1.8218 5.1715 41 1 8.2468 -2.7741 4.3650 42 1 9.2681 -1.3720 6.1026 43 1 8.5029 0.0821 5.4175 44 1 10.6026 0.0578 2.4702 45 1 9.2810 0.9160 3.2985 46 1 9.1195 -1.8388 1.9892 47 1 8.3594 -0.3379 1.4018 48 1 5.1895 -1.3160 0.0098 49 1 3.8411 -2.4775 -0.0917 50 1 3.9333 -1.1896 -2.1672 51 1 3.9158 0.3389 -1.2547 52 1 1.3643 -2.5424 -0.3879 53 1 0.4152 -5.6267 -1.2325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036261159.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:22 Heat of formation + Delta-G solvation = -77.636893 kcal Electronic energy + Delta-G solvation = -31001.329560 eV Core-core repulsion = 27065.456764 eV Total energy + Delta-G solvation = -3935.872795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.13791 -40.74723 -39.16686 -37.88586 -35.84381 -34.47292 -33.01059 -32.24436 -31.93737 -30.91585 -28.11563 -27.03131 -26.73790 -25.49356 -25.08423 -24.57478 -23.04197 -22.89240 -20.55161 -19.54545 -19.24871 -19.16768 -18.21846 -17.20605 -16.92049 -16.77722 -16.68754 -16.36863 -16.01619 -15.80659 -15.54551 -15.42059 -15.07889 -14.87256 -14.70313 -14.38138 -14.25506 -14.16559 -13.65667 -13.52830 -13.14701 -12.99032 -12.94446 -12.85663 -12.75088 -12.65538 -12.50831 -12.41783 -12.19769 -12.11583 -12.03908 -11.95647 -11.86783 -11.57439 -11.43847 -11.32668 -11.15466 -10.99223 -10.85007 -10.62560 -10.25644 -9.57248 -8.91730 -7.88297 -5.14388 1.49650 1.50378 1.58028 1.61142 2.05770 2.60076 3.01687 3.38460 3.43415 3.46544 3.53071 3.68723 3.74538 3.88678 3.94749 4.05668 4.10938 4.12423 4.14120 4.22863 4.35020 4.39838 4.41727 4.50844 4.56639 4.58322 4.66427 4.70773 4.73289 4.78158 4.78230 4.84063 4.85269 4.91588 4.95366 4.99962 5.04496 5.09698 5.13342 5.13905 5.19458 5.24368 5.29670 5.31820 5.38551 5.47587 5.50378 5.60830 5.67067 6.32711 6.33482 6.50951 7.18539 7.40995 8.17549 8.40910 9.35050 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.002839 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.286434 B = 9859.343934 C =10769.099020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.599 5.599 6 C 0.518 3.482 7 O -0.589 6.589 8 C -0.130 4.130 9 C -0.103 4.103 10 C -0.073 4.073 11 C -0.111 4.111 12 C -0.138 4.138 13 C 0.062 3.938 14 O -0.404 6.404 15 C 0.058 3.942 16 C -0.128 4.128 17 C 0.123 3.877 18 C -0.143 4.143 19 C 0.172 3.828 20 H 0.047 0.953 21 N -0.725 5.725 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.074 4.074 25 N -0.970 5.970 26 Si 0.963 3.037 27 H -0.290 1.290 28 H -0.304 1.304 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.049 0.951 50 H 0.068 0.932 51 H 0.077 0.923 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.003 11.691 7.679 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.000 4.000 5 N -0.330 5.330 6 C 0.308 3.692 7 O -0.470 6.470 8 C -0.150 4.150 9 C -0.141 4.141 10 C -0.073 4.073 11 C -0.149 4.149 12 C -0.176 4.176 13 C -0.014 4.014 14 O -0.323 6.323 15 C -0.019 4.019 16 C -0.166 4.166 17 C 0.001 3.999 18 C -0.184 4.184 19 C 0.063 3.937 20 H 0.065 0.935 21 N -0.366 5.366 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.266 4.266 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.125 0.875 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.110 0.890 48 H 0.123 0.877 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.206 0.794 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.903 11.847 8.024 22.146 hybrid contribution -1.234 -1.227 -0.622 1.848 sum 15.670 10.620 7.402 20.325 Atomic orbital electron populations 1.21604 0.94247 1.01422 1.01716 1.21614 0.96469 0.99271 0.94349 0.89667 1.21446 0.79999 0.99856 0.98718 1.48185 1.06484 1.59761 1.18587 1.21110 0.90434 0.76182 0.81475 1.90617 1.76432 1.47356 1.32636 1.22831 0.89017 1.00674 1.02499 1.22842 0.96203 0.98254 0.96795 1.21491 0.93895 0.96051 0.95858 1.22914 0.96864 0.94236 1.00873 1.22097 0.99537 0.99992 0.95975 1.22646 0.87098 0.99122 0.92581 1.87864 1.35218 1.79066 1.30127 1.22745 0.99421 0.94464 0.85227 1.21992 0.94334 1.01964 0.98298 1.21557 0.98294 0.96871 0.83192 1.22332 0.98190 1.00375 0.97488 1.20443 0.92520 0.85104 0.95610 0.93528 1.42597 1.79119 1.09292 1.05583 1.19562 1.34590 0.93802 0.87686 0.90647 1.25385 1.03669 0.98485 0.99074 1.69806 1.53979 1.12802 1.25525 0.85283 0.76638 0.78426 0.80271 1.21694 1.23099 1.19678 0.91869 0.92131 0.94245 0.93574 0.90299 0.84698 0.89818 0.90614 0.91317 0.89421 0.90987 0.91062 0.88067 0.92755 0.87486 0.92508 0.90605 0.89044 0.87697 0.93265 0.91316 0.90488 0.79392 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.05 71.98 0.65 -3.54 16 2 C -0.10 -3.07 2.67 -10.72 -0.03 -3.10 16 3 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 4 C 0.12 4.20 5.42 86.36 0.47 4.66 16 5 N -0.60 -18.53 2.98 -819.73 -2.44 -20.97 16 6 C 0.52 15.51 7.22 87.66 0.63 16.15 16 7 O -0.59 -21.67 15.31 -3.03 -0.05 -21.72 16 8 C -0.13 -2.70 2.40 -10.96 -0.03 -2.73 16 9 C -0.10 -1.97 6.36 30.99 0.20 -1.78 16 10 C -0.07 -1.20 0.77 -52.02 -0.04 -1.24 16 11 C -0.11 -2.20 6.66 31.05 0.21 -2.00 16 12 C -0.14 -2.29 5.33 30.63 0.16 -2.13 16 13 C 0.06 0.96 6.78 72.08 0.49 1.45 16 14 O -0.40 -7.29 10.72 -148.98 -1.60 -8.89 16 15 C 0.06 0.77 6.78 72.07 0.49 1.26 16 16 C -0.13 -1.70 5.24 30.63 0.16 -1.54 16 17 C 0.12 3.59 6.06 86.22 0.52 4.11 16 18 C -0.14 -4.25 5.76 30.53 0.18 -4.07 16 19 C 0.17 6.11 2.53 45.02 0.11 6.23 16 20 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 21 N -0.72 -33.18 3.64 -322.81 -1.18 -34.36 16 22 C -0.22 -11.55 9.93 84.03 0.83 -10.71 16 23 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 25 N -0.97 -57.53 13.06 21.65 0.28 -57.24 16 26 Si 0.96 44.80 29.55 68.60 2.03 46.83 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 33 H 0.05 1.83 6.64 -2.39 -0.02 1.81 16 34 H 0.08 2.74 7.00 -2.39 -0.02 2.73 16 35 H 0.14 2.18 6.72 -2.39 -0.02 2.16 16 36 H 0.08 1.35 7.63 -2.39 -0.02 1.33 16 37 H 0.08 1.80 7.30 -2.38 -0.02 1.78 16 38 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 39 H 0.09 1.57 8.10 -2.39 -0.02 1.56 16 40 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 41 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 0.69 7.68 -2.39 -0.02 0.67 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 0.96 7.36 -2.39 -0.02 0.94 16 48 H 0.10 2.30 5.69 -2.38 -0.01 2.29 16 49 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 50 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.37 18.85 5.92 -92.71 -0.55 18.30 16 53 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -65.49 398.07 2.86 -62.62 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.34 Total: 36.32 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.48 Total: -2.59 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.34 Total: -112.57 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.64 Total: -30.61 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.49 2.86 -62.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036261159.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.012 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds