Wall clock time and date at job start Tue Mar 31 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52259 * 2 1 4 4 C 1.53195 * 109.49699 * 239.91685 * 2 1 3 5 5 N 1.46919 * 108.89273 * 185.48402 * 4 2 1 6 6 C 1.34783 * 120.63144 * 233.55709 * 5 4 2 7 7 O 1.21274 * 119.99655 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 C 1.53875 * 113.60222 * 277.58167 * 8 6 5 10 10 C 1.53305 * 86.94790 * 220.33879 * 9 8 6 11 11 C 1.53333 * 87.55284 * 25.17963 * 10 9 8 12 12 C 1.52828 * 113.64483 * 139.94493 * 10 9 8 13 13 C 1.53270 * 108.87905 * 184.13526 * 12 10 9 14 14 O 1.42888 * 109.33576 * 304.70078 * 13 12 10 15 15 C 1.42901 * 114.36435 * 62.98602 * 14 13 12 16 16 C 1.52830 * 113.64177 * 270.41259 * 10 9 8 17 17 C 1.46928 * 118.73982 * 53.53793 * 5 4 2 18 18 C 1.53191 * 108.77343 * 306.39079 * 17 5 4 19 19 C 1.53039 * 109.31416 * 54.63452 * 18 17 5 20 20 H 1.09002 * 109.45879 * 178.61277 * 19 18 17 21 21 N 1.46501 * 109.45693 * 58.64317 * 19 18 17 22 22 C 1.36938 * 120.00555 * 84.99979 * 21 19 18 23 23 H 1.08005 * 119.99493 * 0.02562 * 22 21 19 24 24 C 1.38804 * 120.00303 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99816 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00018 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47490 * 89.99843 * 26 24 22 28 28 H 1.48503 * 109.47021 * 209.99914 * 26 24 22 29 29 H 1.48504 * 109.47266 * 329.99364 * 26 24 22 30 30 H 1.09005 * 109.47207 * 180.08746 * 1 2 3 31 31 H 1.09002 * 109.47201 * 300.07916 * 1 2 3 32 32 H 1.09001 * 109.47583 * 60.08531 * 1 2 3 33 33 H 1.09002 * 109.58720 * 65.62433 * 4 2 1 34 34 H 1.08996 * 109.58651 * 305.34329 * 4 2 1 35 35 H 1.09000 * 112.84051 * 48.84616 * 8 6 5 36 36 H 1.08995 * 113.63627 * 334.85698 * 9 8 6 37 37 H 1.09000 * 113.63331 * 105.82783 * 9 8 6 38 38 H 1.08996 * 113.63514 * 220.30946 * 11 10 9 39 39 H 1.09001 * 113.63586 * 89.33108 * 11 10 9 40 40 H 1.08996 * 109.57414 * 303.95803 * 12 10 9 41 41 H 1.09000 * 109.56388 * 64.32637 * 12 10 9 42 42 H 1.08995 * 109.49252 * 184.73035 * 13 12 10 43 43 H 1.09005 * 109.49209 * 64.65691 * 13 12 10 44 44 H 1.08995 * 109.49523 * 177.05725 * 15 14 13 45 45 H 1.09001 * 109.49103 * 56.96576 * 15 14 13 46 46 H 1.08996 * 109.56768 * 295.67583 * 16 10 9 47 47 H 1.08991 * 109.57032 * 56.04048 * 16 10 9 48 48 H 1.08998 * 109.58787 * 66.18123 * 17 5 4 49 49 H 1.09007 * 109.58600 * 186.46436 * 17 5 4 50 50 H 1.09002 * 109.49529 * 174.58688 * 18 17 5 51 51 H 1.09005 * 109.49968 * 294.64599 * 18 17 5 52 52 H 0.97004 * 119.99713 * 265.00098 * 21 19 18 53 53 H 0.97000 * 120.00011 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5044 -0.8321 -1.1714 6 6 4.2806 -0.3909 -2.1811 7 8 3.7723 0.1015 -3.1660 8 6 5.7799 -0.5084 -2.0857 9 6 6.4369 0.6266 -1.2808 10 6 7.5459 0.6245 -2.3393 11 6 6.5204 0.0400 -3.3179 12 6 8.0301 2.0225 -2.7225 13 6 9.0567 1.8990 -3.8538 14 8 10.1072 1.0206 -3.4456 15 6 9.6873 -0.3210 -3.1888 16 6 8.6976 -0.3275 -2.0184 17 6 4.1055 -1.4301 0.0285 18 6 3.5741 -0.6965 1.2639 19 6 2.0440 -0.7214 1.2483 20 1 1.6636 -0.2214 2.1391 21 7 1.5787 -2.1105 1.2321 22 6 1.4474 -2.8025 2.4064 23 1 1.6864 -2.3240 3.3447 24 6 1.0060 -4.1184 2.3910 25 7 0.7133 -4.7009 1.2476 26 14 0.8262 -5.0620 3.9931 27 1 -0.5449 -4.8695 4.5298 28 1 1.0625 -6.5070 3.7456 29 1 1.8181 -4.5598 4.9775 30 1 -0.3634 -1.0277 0.0016 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.7637 -0.1580 -2.1389 34 1 1.6033 -1.7207 -1.2993 35 1 6.1081 -1.5039 -1.7866 36 1 5.8512 1.5456 -1.2633 37 1 6.7766 0.3206 -0.2914 38 1 6.9273 -0.7370 -3.9649 39 1 5.9578 0.7966 -3.8649 40 1 7.1847 2.6218 -3.0605 41 1 8.4945 2.4976 -1.8584 42 1 9.4709 2.8820 -4.0780 43 1 8.5713 1.4970 -4.7432 44 1 10.5542 -0.9312 -2.9355 45 1 9.2030 -0.7269 -4.0769 46 1 9.2029 0.0035 -1.1111 47 1 8.3088 -1.3355 -1.8748 48 1 3.8357 -2.4846 0.0856 49 1 5.1901 -1.3324 -0.0187 50 1 3.9369 -1.1913 2.1649 51 1 3.9218 0.3365 1.2512 52 1 1.3637 -2.5401 0.3894 53 1 0.4052 -5.6207 1.2368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036261162.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:26 Heat of formation + Delta-G solvation = -77.752766 kcal Electronic energy + Delta-G solvation = -31042.830672 eV Core-core repulsion = 27106.952852 eV Total energy + Delta-G solvation = -3935.877820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.14466 -40.73191 -39.15673 -37.89031 -35.84082 -34.46908 -32.99510 -32.22880 -31.93303 -30.89869 -28.11321 -27.02422 -26.73214 -25.49776 -25.08102 -24.57161 -23.05548 -22.85517 -20.60695 -19.49919 -19.28229 -19.08584 -18.23555 -17.22749 -16.91948 -16.80307 -16.63235 -16.33897 -15.94161 -15.87629 -15.55148 -15.47369 -14.98902 -14.86372 -14.71980 -14.54313 -14.28746 -13.95925 -13.59085 -13.54073 -13.14337 -13.01205 -12.93700 -12.86409 -12.77524 -12.63919 -12.51247 -12.38496 -12.18695 -12.11251 -12.03788 -11.95098 -11.86992 -11.57500 -11.43481 -11.31022 -11.15013 -10.99909 -10.85297 -10.62286 -10.25020 -9.56755 -8.91607 -7.88165 -5.14320 1.49712 1.50635 1.58155 1.61305 2.06173 2.60241 3.01634 3.40037 3.44347 3.46821 3.53385 3.69655 3.75291 3.89037 3.95572 4.07000 4.11125 4.13451 4.14635 4.24771 4.34775 4.40316 4.41446 4.50910 4.55937 4.58336 4.66749 4.71181 4.74423 4.79380 4.81060 4.84133 4.85330 4.92260 4.97054 5.00581 5.04665 5.10739 5.13337 5.14182 5.20572 5.24416 5.30032 5.32168 5.40053 5.47466 5.50701 5.60979 5.67225 6.32598 6.33680 6.51096 7.18697 7.41115 8.17667 8.40994 9.35194 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.002770 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.332546 B =10106.128277 C =10933.775841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.123 3.877 5 N -0.600 5.600 6 C 0.518 3.482 7 O -0.589 6.589 8 C -0.134 4.134 9 C -0.102 4.102 10 C -0.073 4.073 11 C -0.107 4.107 12 C -0.135 4.135 13 C 0.059 3.941 14 O -0.403 6.403 15 C 0.057 3.943 16 C -0.129 4.129 17 C 0.122 3.878 18 C -0.140 4.140 19 C 0.172 3.828 20 H 0.046 0.954 21 N -0.725 5.725 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.074 4.074 25 N -0.970 5.970 26 Si 0.963 3.037 27 H -0.294 1.294 28 H -0.302 1.302 29 H -0.269 1.269 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.049 0.951 49 H 0.105 0.895 50 H 0.067 0.933 51 H 0.076 0.924 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.092 13.348 -6.810 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.000 4.000 5 N -0.330 5.330 6 C 0.308 3.692 7 O -0.470 6.470 8 C -0.155 4.155 9 C -0.140 4.140 10 C -0.074 4.074 11 C -0.144 4.144 12 C -0.173 4.173 13 C -0.017 4.017 14 O -0.322 6.322 15 C -0.019 4.019 16 C -0.167 4.167 17 C 0.000 4.000 18 C -0.181 4.181 19 C 0.063 3.937 20 H 0.064 0.936 21 N -0.366 5.366 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.222 1.222 28 H -0.229 1.229 29 H -0.193 1.193 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.123 0.877 50 H 0.086 0.914 51 H 0.095 0.905 52 H 0.206 0.794 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.016 13.622 -7.097 22.924 hybrid contribution -1.240 -1.374 0.502 1.918 sum 15.776 12.248 -6.595 21.033 Atomic orbital electron populations 1.21602 0.94250 1.01425 1.01704 1.21608 0.96431 0.99246 0.94365 0.89749 1.21439 0.80003 0.99884 0.98699 1.48183 1.06480 1.59601 1.18776 1.21112 0.90370 0.76296 0.81376 1.90615 1.76378 1.47356 1.32700 1.22836 0.88714 1.02370 1.01572 1.22871 0.95844 0.96780 0.98486 1.21455 0.93690 0.96010 0.96204 1.22870 0.95877 1.00481 0.95204 1.22082 0.99478 0.95873 0.99866 1.22673 0.88652 0.94648 0.95724 1.87861 1.34879 1.21095 1.88378 1.22724 0.98895 0.83327 0.96944 1.21988 0.95266 0.99763 0.99654 1.21647 0.98323 0.96701 0.83305 1.22370 0.98061 1.00276 0.97360 1.20452 0.92525 0.85097 0.95583 0.93555 1.42607 1.79010 1.09426 1.05576 1.19565 1.34497 0.93870 0.87680 0.90645 1.25387 1.03673 0.98506 0.99085 1.69807 1.53874 1.12916 1.25548 0.85281 0.77595 0.77527 0.80206 1.22201 1.22926 1.19344 0.94241 0.92151 0.91863 0.90325 0.93548 0.85724 0.90233 0.88896 0.90637 0.90315 0.90654 0.90581 0.87907 0.93128 0.87634 0.92951 0.90153 0.89617 0.93301 0.87709 0.91414 0.90517 0.79384 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.06 71.98 0.65 -3.54 16 2 C -0.10 -3.06 2.67 -10.71 -0.03 -3.09 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.12 4.19 5.41 86.36 0.47 4.66 16 5 N -0.60 -18.53 2.97 -818.91 -2.44 -20.96 16 6 C 0.52 15.54 7.22 87.66 0.63 16.17 16 7 O -0.59 -21.68 15.31 -3.01 -0.05 -21.73 16 8 C -0.13 -2.82 2.37 -10.95 -0.03 -2.84 16 9 C -0.10 -1.72 6.37 30.99 0.20 -1.52 16 10 C -0.07 -1.12 0.77 -52.08 -0.04 -1.16 16 11 C -0.11 -2.07 6.36 31.00 0.20 -1.87 16 12 C -0.14 -1.97 5.33 30.63 0.16 -1.80 16 13 C 0.06 0.87 6.78 72.07 0.49 1.36 16 14 O -0.40 -7.15 10.72 -148.98 -1.60 -8.75 16 15 C 0.06 0.79 6.78 72.07 0.49 1.28 16 16 C -0.13 -1.69 5.23 30.63 0.16 -1.53 16 17 C 0.12 3.57 6.05 86.36 0.52 4.09 16 18 C -0.14 -4.16 5.78 30.67 0.18 -3.98 16 19 C 0.17 6.12 2.54 45.03 0.11 6.23 16 20 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 21 N -0.73 -33.17 3.63 -322.76 -1.17 -34.34 16 22 C -0.22 -11.53 9.93 84.03 0.83 -10.69 16 23 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 25 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 26 Si 0.96 44.76 29.55 68.60 2.03 46.79 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 29 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 30 H 0.04 1.50 7.53 -2.38 -0.02 1.48 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.73 7.00 -2.39 -0.02 2.72 16 34 H 0.05 1.84 6.65 -2.39 -0.02 1.82 16 35 H 0.12 2.30 6.98 -2.39 -0.02 2.29 16 36 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 37 H 0.09 1.31 7.92 -2.39 -0.02 1.29 16 38 H 0.07 1.36 7.63 -2.39 -0.02 1.34 16 39 H 0.08 1.84 7.31 -2.39 -0.02 1.82 16 40 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 0.73 8.12 -2.38 -0.02 0.72 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 0.71 7.67 -2.39 -0.02 0.69 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.09 1.00 7.35 -2.39 -0.02 0.98 16 48 H 0.05 1.79 7.74 -2.39 -0.02 1.77 16 49 H 0.10 2.32 5.46 -2.38 -0.01 2.30 16 50 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 52 H 0.37 18.83 5.92 -92.71 -0.55 18.28 16 53 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -65.25 397.60 2.86 -62.39 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.34 Total: 35.69 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.47 Total: -1.86 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -3.33 Total: -112.53 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.64 Total: -30.48 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.25 2.86 -62.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036261162.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.368 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds