Wall clock time and date at job start Tue Mar 31 2020 21:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49903 * 2 1 4 4 C 1.53625 * 109.43211 * 120.22684 * 2 1 3 5 5 N 1.46920 * 108.54391 * 174.72245 * 4 2 1 6 6 C 1.34778 * 120.63095 * 126.36409 * 5 4 2 7 7 O 1.21279 * 119.99890 * 359.72404 * 6 5 4 8 8 C 1.50695 * 120.00147 * 179.71897 * 6 5 4 9 9 C 1.53872 * 113.60190 * 180.02562 * 8 6 5 10 10 C 1.53302 * 86.94917 * 139.66758 * 9 8 6 11 11 C 1.53327 * 87.54958 * 334.81953 * 10 9 8 12 12 C 1.52832 * 113.65318 * 89.58238 * 10 9 8 13 13 C 1.53273 * 108.96946 * 184.26174 * 12 10 9 14 14 O 1.42902 * 109.32387 * 304.63402 * 13 12 10 15 15 C 1.42885 * 114.38274 * 62.98223 * 14 13 12 16 16 C 1.53106 * 113.82944 * 220.02166 * 10 9 8 17 17 C 1.46931 * 118.74063 * 306.09729 * 5 4 2 18 18 C 1.53193 * 108.77382 * 53.85683 * 17 5 4 19 19 C 1.53040 * 109.49586 * 239.93690 * 2 1 3 20 20 H 1.08998 * 109.44931 * 298.69926 * 19 2 1 21 21 N 1.46500 * 109.46174 * 58.66409 * 19 2 1 22 22 C 1.36941 * 119.99838 * 205.07096 * 21 19 2 23 23 H 1.07995 * 120.00026 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99740 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00299 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00012 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46918 * 89.99884 * 26 24 22 28 28 H 1.48492 * 109.47009 * 209.99465 * 26 24 22 29 29 H 1.48501 * 109.46935 * 329.99773 * 26 24 22 30 30 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47122 * 300.06216 * 1 2 3 32 32 H 1.08999 * 109.47232 * 60.06696 * 1 2 3 33 33 H 1.08995 * 109.73768 * 54.98567 * 4 2 1 34 34 H 1.09001 * 109.65829 * 294.41834 * 4 2 1 35 35 H 1.09004 * 112.89269 * 48.79612 * 8 6 5 36 36 H 1.08992 * 113.63352 * 25.15133 * 9 8 6 37 37 H 1.09005 * 113.71311 * 254.19512 * 9 8 6 38 38 H 1.09004 * 113.63177 * 139.69599 * 11 10 9 39 39 H 1.09001 * 113.64227 * 270.66907 * 11 10 9 40 40 H 1.09002 * 109.57412 * 64.38165 * 12 10 9 41 41 H 1.08998 * 109.56761 * 304.13478 * 12 10 9 42 42 H 1.09000 * 109.49453 * 64.58561 * 13 12 10 43 43 H 1.08998 * 109.49894 * 184.65130 * 13 12 10 44 44 H 1.08994 * 109.49627 * 56.97447 * 15 14 13 45 45 H 1.09002 * 109.49525 * 177.07282 * 15 14 13 46 46 H 1.09002 * 109.53157 * 56.02129 * 16 10 9 47 47 H 1.08994 * 109.64680 * 295.74832 * 16 10 9 48 48 H 1.08992 * 109.58579 * 173.65011 * 17 5 4 49 49 H 1.09005 * 109.57854 * 294.07199 * 17 5 4 50 50 H 1.08990 * 109.50059 * 65.32406 * 18 17 5 51 51 H 1.09007 * 109.49327 * 185.41890 * 18 17 5 52 52 H 0.97001 * 120.00047 * 25.06631 * 21 19 2 53 53 H 0.97001 * 120.00214 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0411 -0.7293 1.2518 5 7 3.5046 -0.8296 1.1693 6 6 4.2811 -0.3871 2.1781 7 8 3.7732 0.1039 3.1639 8 6 5.7805 -0.5027 2.0813 9 6 6.5215 0.0464 3.3130 10 6 7.4622 -1.1569 3.1815 11 6 6.3180 -1.8904 2.4719 12 6 8.6711 -0.8950 2.2839 13 6 9.4768 -2.1912 2.1425 14 8 9.8241 -2.6762 3.4411 15 6 8.7059 -3.0313 4.2566 16 6 7.8550 -1.7843 4.5218 17 6 4.1053 -1.4267 -0.0313 18 6 3.5708 -0.6946 -1.2663 19 6 2.0408 -0.7227 -1.2486 20 1 1.6966 -1.7569 -1.2356 21 7 1.5265 -0.0522 -2.4453 22 6 1.3950 -0.7486 -3.6171 23 1 1.6708 -1.7919 -3.6591 24 6 0.9083 -0.1131 -4.7512 25 7 0.5726 1.1586 -4.7001 26 14 0.7295 -1.0627 -6.3499 27 1 -0.6227 -1.6732 -6.4144 28 1 0.9105 -0.1382 -7.4976 29 1 1.7586 -2.1317 -6.4082 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6085 -1.7287 1.2979 34 1 1.7629 -0.1669 2.1431 35 1 6.1740 -0.1332 1.1343 36 1 5.9229 0.0357 4.2237 37 1 7.0109 1.0048 3.1389 38 1 6.6437 -2.4884 1.6207 39 1 5.6629 -2.4378 3.1496 40 1 9.2973 -0.1227 2.7308 41 1 8.3320 -0.5668 1.3014 42 1 8.8759 -2.9382 1.6239 43 1 10.3848 -1.9948 1.5723 44 1 8.1036 -3.7800 3.7421 45 1 9.0609 -3.4375 5.2038 46 1 6.9558 -2.0655 5.0700 47 1 8.4304 -1.0673 5.1074 48 1 5.1895 -1.3247 0.0133 49 1 3.8375 -2.4818 -0.0875 50 1 3.9159 0.3392 -1.2541 51 1 3.9334 -1.1891 -2.1675 52 1 1.2791 0.8850 -2.4077 53 1 0.2321 1.6026 -5.4925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036261168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:33 Heat of formation + Delta-G solvation = -81.236894 kcal Electronic energy + Delta-G solvation = -30567.266157 eV Core-core repulsion = 26631.237254 eV Total energy + Delta-G solvation = -3936.028903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.12593 -40.66765 -39.08525 -37.87796 -36.15923 -34.45069 -33.06107 -32.22094 -31.93483 -30.99682 -28.19801 -26.92381 -26.75587 -25.64650 -24.64396 -24.25799 -23.09114 -22.75948 -21.08900 -19.85281 -19.20453 -19.02713 -18.31277 -17.18708 -16.91230 -16.81956 -16.76939 -16.39191 -15.85126 -15.73642 -15.46568 -15.46333 -15.11570 -14.89162 -14.80794 -14.36311 -14.28366 -13.91540 -13.64617 -13.42930 -13.17668 -13.08654 -12.97238 -12.85934 -12.80021 -12.63024 -12.53593 -12.39063 -12.20683 -12.15797 -12.13933 -12.01352 -11.84875 -11.65341 -11.42029 -11.30675 -11.15514 -11.00084 -10.85950 -10.58910 -10.26203 -9.64276 -8.96065 -7.90734 -5.18360 1.49022 1.49859 1.57924 1.59807 2.04070 2.58336 3.03635 3.38761 3.42684 3.45836 3.53174 3.67996 3.74008 3.80078 3.93688 4.03934 4.08254 4.13434 4.15425 4.25445 4.33941 4.39999 4.41341 4.50998 4.52366 4.60934 4.66472 4.71744 4.77458 4.78436 4.80783 4.82843 4.83706 4.86426 4.92223 4.98571 5.01462 5.02341 5.12067 5.13742 5.18449 5.21778 5.32371 5.39653 5.40912 5.48745 5.52537 5.57435 5.65474 6.30574 6.35109 6.45641 7.17759 7.37087 8.13386 8.36396 9.32908 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002544 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.548529 B =11005.692708 C =12117.788043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 H 0.050 0.950 4 C 0.126 3.874 5 N -0.606 5.606 6 C 0.520 3.480 7 O -0.588 6.588 8 C -0.133 4.133 9 C -0.108 4.108 10 C -0.074 4.074 11 C -0.104 4.104 12 C -0.130 4.130 13 C 0.058 3.942 14 O -0.405 6.405 15 C 0.061 3.939 16 C -0.136 4.136 17 C 0.117 3.883 18 C -0.143 4.143 19 C 0.180 3.820 20 H 0.048 0.952 21 N -0.732 5.732 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.967 3.033 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.266 1.266 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.068 0.932 52 H 0.370 0.630 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.977 -9.211 17.566 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.068 0.932 4 C 0.002 3.998 5 N -0.337 5.337 6 C 0.310 3.690 7 O -0.469 6.469 8 C -0.154 4.154 9 C -0.146 4.146 10 C -0.074 4.074 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.018 4.018 14 O -0.325 6.325 15 C -0.016 4.016 16 C -0.174 4.174 17 C -0.005 4.005 18 C -0.184 4.184 19 C 0.071 3.929 20 H 0.066 0.934 21 N -0.371 5.371 22 C -0.360 4.360 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.219 1.219 28 H -0.228 1.228 29 H -0.191 1.191 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.126 0.874 49 H 0.103 0.897 50 H 0.063 0.937 51 H 0.087 0.913 52 H 0.201 0.799 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.902 -9.143 18.004 26.333 hybrid contribution -1.096 0.638 -1.335 1.842 sum 15.806 -8.505 16.668 24.495 Atomic orbital electron populations 1.21579 0.94180 1.01985 1.01092 1.21678 0.96527 0.98954 0.94772 0.93157 1.21643 0.79657 1.00999 0.97453 1.48260 1.06681 1.60225 1.18533 1.21079 0.90354 0.76011 0.81583 1.90636 1.76384 1.46830 1.33005 1.22835 0.89132 1.01358 1.02104 1.22826 0.96504 0.98253 0.96972 1.21500 0.93883 0.96083 0.95977 1.22930 0.96401 0.93718 1.01114 1.21988 0.95555 0.98891 1.00294 1.22735 1.00407 0.94471 0.84216 1.87866 1.32781 1.84601 1.27214 1.22676 0.87887 0.95473 0.95545 1.22134 1.00584 0.98322 0.96364 1.21893 0.99170 0.97354 0.82089 1.22486 0.98170 1.00090 0.97693 1.20421 0.91937 0.95213 0.85311 0.93423 1.42608 1.76930 1.10804 1.06781 1.19595 1.33610 0.94383 0.88417 0.90348 1.25497 1.03276 0.96892 1.01336 1.69824 1.52132 1.11121 1.29265 0.85219 0.77839 0.77519 0.79688 1.21852 1.22808 1.19099 0.92275 0.91919 0.94122 0.90056 0.90237 0.85416 0.90434 0.90732 0.88665 0.90060 0.90979 0.89370 0.92125 0.87889 0.92420 0.88169 0.90555 0.91318 0.87388 0.89692 0.93706 0.91319 0.79890 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.03 71.98 0.65 -3.59 16 2 C -0.10 -3.22 2.47 -10.57 -0.03 -3.25 16 3 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.13 3.46 5.75 86.51 0.50 3.96 16 5 N -0.61 -15.26 2.97 -818.08 -2.43 -17.69 16 6 C 0.52 13.56 7.22 87.66 0.63 14.19 16 7 O -0.59 -19.83 15.31 -3.03 -0.05 -19.88 16 8 C -0.13 -2.39 2.40 -10.96 -0.03 -2.41 16 9 C -0.11 -1.92 6.57 30.99 0.20 -1.72 16 10 C -0.07 -1.00 0.78 -51.99 -0.04 -1.04 16 11 C -0.10 -1.41 6.44 30.99 0.20 -1.21 16 12 C -0.13 -1.50 5.22 30.63 0.16 -1.34 16 13 C 0.06 0.68 6.78 72.07 0.49 1.17 16 14 O -0.41 -6.53 10.72 -148.98 -1.60 -8.13 16 15 C 0.06 0.76 6.78 72.08 0.49 1.25 16 16 C -0.14 -1.79 5.35 30.72 0.16 -1.63 16 17 C 0.12 2.53 6.34 86.36 0.55 3.07 16 18 C -0.14 -4.38 5.66 30.67 0.17 -4.21 16 19 C 0.18 6.51 2.19 45.02 0.10 6.60 16 20 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 21 N -0.73 -35.00 4.41 -322.82 -1.42 -36.42 16 22 C -0.23 -12.01 9.93 84.03 0.83 -11.17 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 25 N -0.97 -58.76 13.06 21.65 0.28 -58.47 16 26 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.59 7.36 -2.39 -0.02 1.57 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 35 H 0.13 1.93 6.71 -2.38 -0.02 1.91 16 36 H 0.08 1.70 7.39 -2.39 -0.02 1.68 16 37 H 0.07 1.27 8.09 -2.38 -0.02 1.26 16 38 H 0.09 0.95 7.63 -2.39 -0.02 0.93 16 39 H 0.08 1.24 7.98 -2.39 -0.02 1.22 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.85 7.35 -2.39 -0.02 0.83 16 42 H 0.06 0.60 7.67 -2.39 -0.02 0.58 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 45 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 0.99 8.04 -2.39 -0.02 0.97 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.11 1.70 5.69 -2.39 -0.01 1.69 16 49 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 52 H 0.37 19.62 7.51 -92.71 -0.70 18.92 16 53 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.07 402.06 2.52 -65.55 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.19 Total: 33.21 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.51 Total: -5.22 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.57 Total: -112.58 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.64 Total: -28.01 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.07 2.52 -65.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036261168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.684 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds