Wall clock time and date at job start Tue Mar 31 2020 21:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.53898 * 2 1 4 4 C 1.54802 * 110.48904 * 237.37902 * 2 1 3 5 5 C 1.54995 * 102.09392 * 220.44298 * 4 2 1 6 6 O 1.44383 * 103.48969 * 37.02284 * 5 4 2 7 7 C 1.43747 * 106.97530 * 319.94171 * 6 5 4 8 8 H 1.08997 * 109.87478 * 266.93580 * 7 6 5 9 9 C 1.50704 * 109.87780 * 145.93485 * 7 6 5 10 10 O 1.21276 * 120.00306 * 340.76602 * 9 7 6 11 11 N 1.34770 * 119.99487 * 160.76567 * 9 7 6 12 12 C 1.46927 * 120.62829 * 174.79409 * 11 9 7 13 13 C 1.53202 * 108.77323 * 233.58599 * 12 11 9 14 14 C 1.53034 * 109.31197 * 305.36117 * 13 12 11 15 15 C 1.52996 * 109.46245 * 181.38560 * 14 13 12 16 16 H 1.08995 * 110.88526 * 303.85957 * 15 14 13 17 17 C 1.55157 * 111.00756 * 179.97438 * 15 14 13 18 18 C 1.54322 * 102.94299 * 206.42584 * 17 15 14 19 19 N 1.47020 * 107.27246 * 22.19054 * 18 17 15 20 20 C 1.36942 * 125.65159 * 181.02215 * 19 18 17 21 21 H 1.07998 * 120.00220 * 180.02562 * 20 19 18 22 22 C 1.38815 * 119.99657 * 0.02562 * 20 19 18 23 23 N 1.31617 * 120.00059 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99668 * 179.72108 * 22 20 19 25 25 H 1.48497 * 109.46966 * 60.00664 * 24 22 20 26 26 H 1.48507 * 109.46900 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47419 * 299.99905 * 24 22 20 28 28 C 1.47431 * 108.70499 * 1.29053 * 19 18 17 29 29 C 1.53040 * 109.52810 * 61.37367 * 14 13 12 30 30 C 1.46925 * 120.63422 * 354.76595 * 11 9 7 31 31 H 1.09005 * 109.47330 * 302.05799 * 1 2 3 32 32 H 1.08998 * 109.47048 * 62.05283 * 1 2 3 33 33 H 1.08999 * 109.47234 * 182.05414 * 1 2 3 34 34 H 1.09004 * 110.90748 * 102.24719 * 4 2 1 35 35 H 1.09001 * 110.93840 * 338.65422 * 4 2 1 36 36 H 1.09002 * 110.61767 * 278.52491 * 5 4 2 37 37 H 1.09004 * 110.75327 * 155.58951 * 5 4 2 38 38 H 1.08994 * 109.59449 * 113.79650 * 12 11 9 39 39 H 1.09003 * 109.58868 * 353.36706 * 12 11 9 40 40 H 1.08998 * 109.49273 * 185.40912 * 13 12 11 41 41 H 1.08994 * 109.49818 * 65.31424 * 13 12 11 42 42 H 1.09006 * 109.45895 * 301.36038 * 14 13 12 43 43 H 1.08998 * 110.72120 * 88.05779 * 17 15 14 44 44 H 1.09005 * 110.86842 * 324.85622 * 17 15 14 45 45 H 1.08998 * 109.88117 * 262.77565 * 18 17 15 46 46 H 1.09000 * 110.01197 * 141.68147 * 18 17 15 47 47 H 0.96996 * 119.99844 * 180.02562 * 23 22 20 48 48 H 1.08996 * 110.36837 * 94.47752 * 28 19 18 49 49 H 1.08994 * 110.36472 * 216.81102 * 28 19 18 50 50 H 1.09001 * 109.50125 * 58.57388 * 29 14 13 51 51 H 1.09000 * 109.49812 * 178.67993 * 29 14 13 52 52 H 1.09006 * 109.58839 * 246.20049 * 30 11 9 53 53 H 1.08997 * 109.58515 * 6.62814 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0719 -0.7817 -1.2213 5 6 3.2660 -1.5561 -0.6075 6 8 2.7956 -1.9109 0.7106 7 6 2.0694 -0.7779 1.2160 8 1 2.7344 -0.1422 1.8004 9 6 0.9227 -1.2459 2.0747 10 8 0.5158 -2.3840 1.9754 11 7 0.3494 -0.3995 2.9529 12 6 -0.8402 -0.8036 3.7146 13 6 -1.9372 0.2460 3.5094 14 6 -1.3921 1.6269 3.8810 15 6 -2.4953 2.6732 3.7103 16 1 -2.8951 2.6544 2.6965 17 6 -1.9803 4.0896 4.0791 18 6 -3.2671 4.8233 4.5120 19 7 -4.2450 3.7968 4.9013 20 6 -5.5239 4.0343 5.3293 21 1 -6.1672 3.2080 5.5936 22 6 -5.9936 5.3372 5.4234 23 7 -5.2099 6.3442 5.1008 24 14 -7.7408 5.6608 5.9997 25 1 -7.9192 5.1154 7.3693 26 1 -7.9949 7.1239 6.0120 27 1 -8.6972 5.0005 5.0754 28 6 -3.6185 2.4696 4.7609 29 6 -0.2141 1.9746 2.9681 30 6 0.9025 0.9447 3.1673 31 1 -0.3634 0.5455 0.8710 32 1 -0.3633 0.4816 -0.9078 33 1 -0.3633 -1.0270 0.0368 34 1 2.4104 -0.0993 -2.0010 35 1 1.3200 -1.4694 -1.6085 36 1 4.1456 -0.9157 -0.5417 37 1 3.4867 -2.4507 -1.1900 38 1 -0.5912 -0.8696 4.7736 39 1 -1.1905 -1.7725 3.3584 40 1 -2.7908 0.0089 4.1443 41 1 -2.2490 0.2470 2.4650 42 1 -1.0574 1.6180 4.9184 43 1 -1.5327 4.5751 3.2119 44 1 -1.2681 4.0416 4.9028 45 1 -3.6569 5.4101 3.6803 46 1 -3.0572 5.4758 5.3596 47 1 -5.5379 7.2546 5.1669 48 1 -3.1969 2.1465 5.7126 49 1 -4.3466 1.7427 4.4010 50 1 -0.5423 1.9590 1.9287 51 1 0.1588 2.9679 3.2176 52 1 1.2937 1.0213 4.1818 53 1 1.7022 1.1294 2.4501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039159106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:44 Heat of formation + Delta-G solvation = -79.642255 kcal Electronic energy + Delta-G solvation = -30965.033533 eV Core-core repulsion = 27029.073779 eV Total energy + Delta-G solvation = -3935.959754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.97968 -40.23766 -39.25883 -37.86694 -35.31338 -34.58601 -33.46767 -32.37488 -30.91352 -30.81521 -29.29213 -27.84018 -26.85313 -25.30612 -24.32854 -23.65711 -22.48948 -21.72849 -21.43194 -20.80590 -19.87484 -18.82769 -18.48686 -17.51338 -17.44666 -16.79643 -16.37470 -16.10159 -15.83675 -15.76439 -15.62157 -15.21696 -15.02039 -14.60259 -14.43927 -14.20140 -14.05348 -13.89430 -13.78097 -13.66122 -13.47202 -13.29091 -13.20522 -12.89493 -12.70631 -12.36750 -12.30306 -12.24013 -12.21468 -12.13512 -12.01718 -11.98662 -11.80118 -11.74164 -11.49577 -11.29323 -11.12166 -11.00811 -10.99363 -10.68353 -10.36477 -9.61477 -8.86280 -7.84057 -5.18724 1.44402 1.47619 1.52251 1.53849 1.84017 2.49910 2.98648 3.33300 3.34184 3.50086 3.64359 3.67778 3.77470 3.86587 3.95175 4.00355 4.14806 4.19446 4.25078 4.28765 4.32953 4.44219 4.46669 4.47098 4.51911 4.60788 4.65711 4.71702 4.76767 4.82262 4.86122 4.87561 4.90929 4.94705 5.01187 5.03913 5.05773 5.07803 5.12886 5.18367 5.20650 5.24801 5.36418 5.45508 5.50367 5.58914 5.65371 5.75556 5.82720 5.83816 6.23070 6.39291 7.12958 7.14306 7.81744 8.45756 9.25973 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.002335 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.877282 B =11987.052926 C =12280.072928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 H 0.127 0.873 4 C -0.148 4.148 5 C 0.039 3.961 6 O -0.388 6.388 7 C 0.059 3.941 8 H 0.118 0.882 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.604 5.604 12 C 0.116 3.884 13 C -0.121 4.121 14 C -0.064 4.064 15 C -0.076 4.076 16 H 0.065 0.935 17 C -0.119 4.119 18 C 0.181 3.819 19 N -0.632 5.632 20 C -0.243 4.243 21 H 0.078 0.922 22 C -0.068 4.068 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.277 1.277 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.135 3.865 29 C -0.127 4.127 30 C 0.102 3.898 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.005 0.995 46 H 0.001 0.999 47 H 0.246 0.754 48 H 0.023 0.977 49 H 0.033 0.967 50 H 0.072 0.928 51 H 0.096 0.904 52 H 0.088 0.912 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.904 -10.973 -11.308 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.126 4.126 3 H 0.145 0.855 4 C -0.185 4.185 5 C -0.037 4.037 6 O -0.307 6.307 7 C -0.002 4.002 8 H 0.135 0.865 9 C 0.307 3.693 10 O -0.461 6.461 11 N -0.338 5.338 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.083 4.083 15 C -0.095 4.095 16 H 0.084 0.916 17 C -0.157 4.157 18 C 0.056 3.944 19 N -0.358 5.358 20 C -0.372 4.372 21 H 0.096 0.904 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.204 1.204 28 C 0.010 3.990 29 C -0.165 4.165 30 C -0.019 4.019 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.023 0.977 46 H 0.019 0.981 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.051 0.949 50 H 0.090 0.910 51 H 0.114 0.886 52 H 0.106 0.894 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.594 -11.612 -11.211 26.166 hybrid contribution -1.659 0.486 0.479 1.794 sum 18.935 -11.126 -10.732 24.444 Atomic orbital electron populations 1.22133 0.94719 1.01175 1.03824 1.22544 0.96530 1.01194 0.92292 0.85463 1.23258 0.97751 0.99558 0.97967 1.23864 0.96970 1.00926 0.81921 1.88950 1.71049 1.37504 1.33240 1.23018 0.92284 0.88636 0.96263 0.86452 1.20850 0.84132 0.84726 0.79600 1.90668 1.65327 1.20894 1.69180 1.48183 1.29363 1.15762 1.40461 1.21549 0.84850 0.98103 0.96119 1.21894 0.97670 0.94444 1.01932 1.20999 0.94247 0.92523 1.00481 1.22237 0.94855 0.94569 0.97888 0.91605 1.22747 0.96375 0.95462 1.01146 1.20942 0.87590 0.90054 0.95813 1.44853 1.10643 1.02461 1.77831 1.19425 0.88923 0.92447 1.36451 0.90373 1.25644 1.02277 0.95480 1.02714 1.70190 1.36455 0.97973 1.55434 0.85180 0.79641 0.76347 0.78348 1.20333 1.21947 1.20398 1.21831 0.94023 0.86894 0.96212 1.22041 0.94594 0.99637 1.00215 1.22111 0.96567 0.79368 1.03894 0.90871 0.90654 0.95038 0.86926 0.91814 0.89320 0.88259 0.90301 0.91172 0.90871 0.92275 0.90423 0.89949 0.90748 0.97685 0.98102 0.94478 0.95946 0.94905 0.90975 0.88605 0.89426 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.94 71.98 0.57 -2.11 16 2 C -0.11 -1.31 3.33 -9.80 -0.03 -1.34 16 3 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.15 -1.65 6.70 31.89 0.21 -1.44 16 5 C 0.04 0.49 7.72 72.66 0.56 1.05 16 6 O -0.39 -8.58 10.81 -131.04 -1.42 -10.00 16 7 C 0.06 1.01 2.92 30.22 0.09 1.10 16 8 H 0.12 1.30 6.55 -2.39 -0.02 1.29 16 9 C 0.52 12.37 4.80 87.66 0.42 12.79 16 10 O -0.58 -19.78 15.78 14.92 0.24 -19.55 16 11 N -0.60 -11.48 2.19 -818.88 -1.79 -13.27 16 12 C 0.12 2.44 6.42 86.37 0.55 3.00 16 13 C -0.12 -2.59 5.24 30.67 0.16 -2.43 16 14 C -0.06 -1.32 1.68 -10.77 -0.02 -1.34 16 15 C -0.08 -2.27 2.58 -9.32 -0.02 -2.30 16 16 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 17 C -0.12 -3.89 5.27 31.78 0.17 -3.72 16 18 C 0.18 8.83 5.38 86.73 0.47 9.30 16 19 N -0.63 -32.64 3.39 -691.53 -2.35 -34.99 16 20 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 21 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 22 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 23 N -0.95 -57.92 10.31 21.65 0.22 -57.70 16 24 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 C 0.14 5.33 5.95 86.93 0.52 5.85 16 29 C -0.13 -1.86 4.93 30.68 0.15 -1.71 16 30 C 0.10 1.24 5.83 86.37 0.50 1.75 16 31 H 0.07 1.23 4.07 -2.38 -0.01 1.22 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 0.73 7.17 -2.39 -0.02 0.71 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.94 7.87 -2.39 -0.02 0.92 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.78 7.04 -2.39 -0.02 1.76 16 40 H 0.07 1.67 7.45 -2.39 -0.02 1.66 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.61 8.07 -2.38 -0.02 1.59 16 43 H 0.08 2.29 8.09 -2.39 -0.02 2.28 16 44 H 0.07 2.18 8.04 -2.38 -0.02 2.16 16 45 H 0.00 0.27 7.38 -2.39 -0.02 0.25 16 46 H 0.00 0.04 7.50 -2.39 -0.02 0.02 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.02 0.87 7.99 -2.39 -0.02 0.85 16 49 H 0.03 1.29 8.04 -2.39 -0.02 1.27 16 50 H 0.07 1.09 6.09 -2.39 -0.01 1.07 16 51 H 0.10 1.22 7.21 -2.39 -0.02 1.21 16 52 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 53 H 0.11 0.78 5.35 -2.39 -0.01 0.76 16 Total: -1.00 -78.92 389.13 3.44 -75.48 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.88 Total: 9.72 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.63 Total: 1.91 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.91 Total: -105.95 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.18 Total: -29.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.92 3.44 -75.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039159106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.164 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds