Wall clock time and date at job start Tue Mar 31 2020 21:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.56440 * 2 1 4 4 C 1.54505 * 110.50984 * 237.31872 * 2 1 3 5 5 C 1.54482 * 104.06396 * 241.35540 * 4 2 1 6 6 O 1.44424 * 104.80185 * 23.98003 * 5 4 2 7 7 C 1.44427 * 105.27716 * 319.48652 * 6 5 4 8 8 H 1.08996 * 110.37660 * 281.68430 * 7 6 5 9 9 C 1.50706 * 110.37290 * 159.44918 * 7 6 5 10 10 O 1.21279 * 120.00078 * 356.46162 * 9 7 6 11 11 N 1.34782 * 119.99698 * 176.45332 * 9 7 6 12 12 C 1.46919 * 120.63051 * 359.72632 * 11 9 7 13 13 C 1.53629 * 108.54045 * 126.36602 * 12 11 9 14 14 C 1.53034 * 109.24160 * 54.85909 * 13 12 11 15 15 C 1.53001 * 109.44853 * 178.49726 * 14 13 12 16 16 H 1.09005 * 110.88570 * 56.17887 * 15 14 13 17 17 C 1.55162 * 111.00424 * 180.02562 * 15 14 13 18 18 C 1.54317 * 102.94177 * 153.57462 * 17 15 14 19 19 N 1.47018 * 107.27237 * 337.80839 * 18 17 15 20 20 C 1.36943 * 125.65037 * 178.98850 * 19 18 17 21 21 H 1.07994 * 120.00143 * 174.78071 * 20 19 18 22 22 C 1.38816 * 119.99646 * 354.77905 * 20 19 18 23 23 N 1.31621 * 119.99860 * 7.06362 * 22 20 19 24 24 Si 1.86797 * 119.99916 * 187.05268 * 22 20 19 25 25 H 1.48503 * 109.46918 * 94.99075 * 24 22 20 26 26 H 1.48501 * 109.47116 * 214.99358 * 24 22 20 27 27 H 1.48498 * 109.47205 * 334.99090 * 24 22 20 28 28 C 1.47426 * 108.70330 * 358.93824 * 19 18 17 29 29 C 1.53046 * 109.53539 * 298.50712 * 14 13 12 30 30 C 1.46926 * 120.62752 * 180.02562 * 11 9 7 31 31 H 1.08999 * 109.47174 * 297.32067 * 1 2 3 32 32 H 1.08997 * 109.47115 * 57.32539 * 1 2 3 33 33 H 1.08996 * 109.47372 * 177.32337 * 1 2 3 34 34 H 1.09003 * 110.51141 * 122.71234 * 4 2 1 35 35 H 1.08997 * 110.51526 * 0.02562 * 4 2 1 36 36 H 1.09004 * 110.37261 * 265.15110 * 5 4 2 37 37 H 1.08994 * 110.37367 * 142.80849 * 5 4 2 38 38 H 1.09000 * 109.59170 * 246.19795 * 12 11 9 39 39 H 1.09001 * 109.59118 * 6.62767 * 12 11 9 40 40 H 1.08997 * 109.63565 * 294.86170 * 13 12 11 41 41 H 1.09003 * 109.42755 * 174.72646 * 13 12 11 42 42 H 1.09001 * 109.46519 * 58.52714 * 14 13 12 43 43 H 1.09004 * 110.72024 * 271.94063 * 17 15 14 44 44 H 1.09000 * 110.71938 * 35.20742 * 17 15 14 45 45 H 1.09006 * 109.88013 * 97.22386 * 18 17 15 46 46 H 1.08997 * 109.88105 * 218.23406 * 18 17 15 47 47 H 0.97000 * 119.99794 * 179.97438 * 23 22 20 48 48 H 1.08996 * 110.36833 * 265.29075 * 28 19 18 49 49 H 1.09003 * 110.36585 * 142.96977 * 28 19 18 50 50 H 1.09000 * 109.49778 * 301.41861 * 29 14 13 51 51 H 1.08999 * 109.49645 * 181.31400 * 29 14 13 52 52 H 1.09006 * 109.58520 * 353.37810 * 30 11 9 53 53 H 1.09001 * 109.58546 * 113.79826 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0714 -0.7814 -1.2180 5 6 2.8757 -1.9423 -0.5920 6 8 2.3069 -2.1177 0.7239 7 6 2.0713 -0.7812 1.2179 8 1 3.0023 -0.3372 1.5702 9 6 1.0498 -0.8038 2.3257 10 8 0.5099 -1.8459 2.6316 11 7 0.7363 0.3340 2.9766 12 6 1.3863 1.6028 2.6216 13 6 0.2961 2.6450 2.3290 14 6 -0.6485 2.7375 3.5295 15 6 -1.7143 3.8011 3.2583 16 1 -2.2524 3.5856 2.3351 17 6 -2.6932 3.9254 4.4557 18 6 -3.1953 5.3802 4.3421 19 7 -2.1940 6.1284 3.5681 20 6 -2.2744 7.4523 3.2276 21 1 -1.4462 7.9328 2.7281 22 6 -3.4207 8.1768 3.5246 23 7 -4.3721 7.6335 4.2541 24 14 -3.6128 9.9229 2.8892 25 1 -4.3806 9.9054 1.6181 26 1 -4.3392 10.7387 3.8952 27 1 -2.2713 10.5127 2.6490 28 6 -1.0882 5.2175 3.2202 29 6 -1.3251 1.3832 3.7538 30 6 -0.2572 0.3277 4.0591 31 1 -0.3633 0.4717 0.9130 32 1 -0.3633 0.5548 -0.8650 33 1 -0.3634 -1.0265 -0.0480 34 1 2.7219 -0.1472 -1.8202 35 1 1.2491 -1.1673 -1.8204 36 1 3.9301 -1.6763 -0.5172 37 1 2.7534 -2.8503 -1.1823 38 1 2.0055 1.9412 3.4523 39 1 2.0053 1.4611 1.7357 40 1 -0.2673 2.3473 1.4447 41 1 0.7600 3.6160 2.1554 42 1 -0.0803 3.0112 4.4185 43 1 -3.5202 3.2229 4.3523 44 1 -2.1700 3.7705 5.3993 45 1 -4.1550 5.4019 3.8256 46 1 -3.2995 5.8151 5.3361 47 1 -5.1729 8.1399 4.4619 48 1 -0.2858 5.2974 3.9535 49 1 -0.7136 5.4399 2.2210 50 1 -1.8733 1.0973 2.8561 51 1 -2.0152 1.4561 4.5944 52 1 -0.7228 -0.6559 4.1220 53 1 0.2311 0.5643 5.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039159107.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:49 Heat of formation + Delta-G solvation = -79.489818 kcal Electronic energy + Delta-G solvation = -30994.847697 eV Core-core repulsion = 27058.894553 eV Total energy + Delta-G solvation = -3935.953144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.96349 -40.22225 -39.30552 -37.89169 -35.36331 -34.49662 -33.42825 -32.27645 -31.18200 -30.55015 -29.26295 -28.05367 -26.78811 -25.31918 -24.34971 -23.67123 -22.29896 -21.71968 -21.51563 -20.83880 -19.97389 -18.80923 -18.28663 -17.59550 -17.32673 -16.77980 -16.53768 -16.05701 -15.92766 -15.78484 -15.64373 -15.18503 -14.89455 -14.58390 -14.43114 -14.09886 -14.07102 -13.92021 -13.75464 -13.67037 -13.55810 -13.34117 -13.20658 -12.91171 -12.73725 -12.41082 -12.35052 -12.24027 -12.18247 -12.12620 -11.97464 -11.87593 -11.78527 -11.67407 -11.55054 -11.30139 -11.07620 -10.99758 -10.89904 -10.66921 -10.55117 -9.62274 -8.85335 -7.84327 -5.17939 1.45762 1.47743 1.52676 1.56550 1.79773 2.50944 2.99215 3.33801 3.34256 3.51624 3.65981 3.71997 3.77074 3.85828 3.94305 4.04339 4.15635 4.19637 4.20480 4.26558 4.33005 4.40331 4.45348 4.49336 4.53661 4.61633 4.64672 4.71587 4.75819 4.81243 4.88052 4.89255 4.93886 4.95679 4.99205 5.04917 5.06480 5.10670 5.14316 5.15063 5.21807 5.26864 5.32721 5.46626 5.51011 5.57149 5.65389 5.72222 5.79305 5.82069 6.23018 6.37205 7.12397 7.12622 7.82255 8.47326 9.26893 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.002478 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.464881 B =11295.781816 C =12077.137182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 H 0.124 0.876 4 C -0.146 4.146 5 C 0.035 3.965 6 O -0.385 6.385 7 C 0.057 3.943 8 H 0.119 0.881 9 C 0.521 3.479 10 O -0.579 6.579 11 N -0.602 5.602 12 C 0.101 3.899 13 C -0.129 4.129 14 C -0.063 4.063 15 C -0.077 4.077 16 H 0.064 0.936 17 C -0.124 4.124 18 C 0.182 3.818 19 N -0.631 5.631 20 C -0.239 4.239 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.976 3.024 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.264 1.264 28 C 0.139 3.861 29 C -0.120 4.120 30 C 0.114 3.886 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.004 0.996 46 H -0.002 1.002 47 H 0.245 0.755 48 H 0.026 0.974 49 H 0.043 0.957 50 H 0.056 0.944 51 H 0.080 0.920 52 H 0.072 0.928 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.540 -16.647 -9.030 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.129 4.129 3 H 0.142 0.858 4 C -0.184 4.184 5 C -0.041 4.041 6 O -0.304 6.304 7 C -0.004 4.004 8 H 0.137 0.863 9 C 0.310 3.690 10 O -0.459 6.459 11 N -0.336 5.336 12 C -0.021 4.021 13 C -0.167 4.167 14 C -0.082 4.082 15 C -0.097 4.097 16 H 0.083 0.917 17 C -0.162 4.162 18 C 0.057 3.943 19 N -0.357 5.357 20 C -0.368 4.368 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.804 3.196 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.189 1.189 28 C 0.015 3.985 29 C -0.158 4.158 30 C -0.008 4.008 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.016 0.984 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.062 0.938 50 H 0.074 0.926 51 H 0.099 0.901 52 H 0.090 0.910 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.100 -17.232 -8.742 25.802 hybrid contribution -0.996 1.198 0.016 1.558 sum 16.104 -16.034 -8.726 24.343 Atomic orbital electron populations 1.22049 0.94932 1.01229 1.03225 1.22613 0.96477 1.01099 0.92680 0.85797 1.23074 1.00854 0.97112 0.97322 1.23733 0.97912 1.00118 0.82367 1.89238 1.83529 1.24827 1.32799 1.23147 0.97847 0.85504 0.93856 0.86347 1.20633 0.82850 0.83070 0.82481 1.90680 1.55046 1.32633 1.67502 1.48146 1.41586 1.08227 1.35656 1.22243 0.95125 0.81724 1.02980 1.22091 0.96881 0.99724 0.97964 1.20996 0.95141 0.92847 0.99233 1.22214 0.95985 0.93943 0.97517 0.91742 1.22755 0.99125 0.95662 0.98680 1.20896 0.91158 0.89093 0.93169 1.44858 1.21270 1.06717 1.62905 1.19493 0.99972 0.85930 1.31402 0.89776 1.25691 0.96785 1.02753 1.01106 1.70225 1.09415 1.37967 1.42646 0.85088 0.77989 0.79389 0.77096 1.21535 1.22420 1.18891 1.21776 0.90123 0.89099 0.97544 1.21890 0.97518 0.93923 1.02441 1.21614 0.89663 0.99871 0.89631 0.91999 0.90562 0.94676 0.87268 0.90724 0.89835 0.88334 0.89189 0.87412 0.91301 0.89286 0.90234 0.90999 0.91026 0.97725 0.98405 0.94595 0.95578 0.93826 0.92552 0.90124 0.90979 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.04 71.98 0.58 -2.12 16 2 C -0.11 -1.35 2.71 -9.78 -0.03 -1.38 16 3 H 0.12 0.82 6.73 -2.39 -0.02 0.81 16 4 C -0.15 -1.42 6.74 31.61 0.21 -1.21 16 5 C 0.03 0.43 7.63 72.49 0.55 0.98 16 6 O -0.39 -8.64 10.91 -130.63 -1.43 -10.07 16 7 C 0.06 0.99 2.66 30.35 0.08 1.07 16 8 H 0.12 1.35 7.66 -2.39 -0.02 1.33 16 9 C 0.52 12.38 5.34 87.66 0.47 12.85 16 10 O -0.58 -19.68 15.97 15.32 0.24 -19.44 16 11 N -0.60 -11.25 2.15 -817.98 -1.76 -13.02 16 12 C 0.10 1.25 5.66 86.51 0.49 1.74 16 13 C -0.13 -2.05 5.07 30.82 0.16 -1.89 16 14 C -0.06 -1.31 1.67 -10.77 -0.02 -1.33 16 15 C -0.08 -2.32 2.56 -9.40 -0.02 -2.34 16 16 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 17 C -0.12 -4.33 5.27 31.78 0.17 -4.16 16 18 C 0.18 9.05 5.38 86.73 0.47 9.52 16 19 N -0.63 -32.06 3.39 -692.01 -2.35 -34.41 16 20 C -0.24 -13.33 10.27 84.03 0.86 -12.46 16 21 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 22 C -0.07 -4.06 5.48 84.86 0.46 -3.59 16 23 N -0.95 -58.38 10.36 21.65 0.22 -58.16 16 24 Si 0.98 45.79 29.56 68.60 2.03 47.81 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 28 C 0.14 5.19 5.94 86.85 0.52 5.71 16 29 C -0.12 -2.43 5.16 30.69 0.16 -2.27 16 30 C 0.11 2.29 6.43 86.37 0.56 2.84 16 31 H 0.06 1.19 4.20 -2.39 -0.01 1.18 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.83 7.73 -2.39 -0.02 0.81 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.84 4.17 -2.39 -0.01 0.83 16 40 H 0.07 1.16 6.60 -2.39 -0.02 1.15 16 41 H 0.09 1.35 7.45 -2.39 -0.02 1.33 16 42 H 0.08 1.62 8.07 -2.39 -0.02 1.60 16 43 H 0.07 2.30 8.09 -2.38 -0.02 2.28 16 44 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 45 H 0.00 0.25 7.30 -2.38 -0.02 0.24 16 46 H 0.00 -0.13 7.61 -2.39 -0.02 -0.15 16 47 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.03 0.94 7.98 -2.39 -0.02 0.92 16 49 H 0.04 1.55 8.05 -2.39 -0.02 1.53 16 50 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 51 H 0.08 1.64 7.21 -2.39 -0.02 1.63 16 52 H 0.07 1.75 7.01 -2.38 -0.02 1.73 16 53 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -78.40 389.01 3.50 -74.90 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.88 Total: 10.44 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.66 Total: 1.94 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.89 Total: -105.58 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.18 Total: -29.50 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.40 3.50 -74.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039159107.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.594 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds