Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.82400 * 2 1 4 4 C 1.54385 * 109.82902 * 120.88885 * 2 1 3 5 5 C 1.55303 * 102.25167 * 140.96169 * 4 2 1 6 6 C 1.54946 * 100.94126 * 325.86302 * 5 4 2 7 7 H 1.08995 * 110.31373 * 277.42761 * 6 5 4 8 8 C 1.52999 * 110.30636 * 155.36215 * 6 5 4 9 9 C 1.52999 * 109.47244 * 175.00167 * 8 6 5 10 10 C 1.50697 * 109.47515 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00183 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00158 * 179.97438 * 10 9 8 13 13 C 1.46948 * 120.44194 * 359.73337 * 12 10 9 14 14 C 1.54068 * 108.29105 * 125.70916 * 13 12 10 15 15 H 1.08998 * 110.52088 * 172.27824 * 14 13 12 16 16 C 1.53367 * 108.83071 * 294.52034 * 14 13 12 17 17 C 1.53011 * 109.25401 * 60.26941 * 16 14 13 18 18 C 1.53010 * 109.79764 * 60.57836 * 17 16 14 19 19 C 1.53363 * 109.26737 * 299.43062 * 18 17 16 20 20 H 1.09002 * 111.08795 * 177.80678 * 19 18 17 21 21 C 1.46949 * 120.44318 * 179.97438 * 12 10 9 22 22 N 1.47563 * 107.70260 * 51.34842 * 14 13 12 23 23 C 1.36937 * 121.61289 * 120.38406 * 22 14 13 24 24 H 1.07996 * 120.00349 * 207.66068 * 23 22 14 25 25 C 1.38810 * 119.99902 * 27.66196 * 23 22 14 26 26 N 1.31619 * 119.99752 * 18.80205 * 25 23 22 27 27 Si 1.86801 * 120.00235 * 198.79963 * 25 23 22 28 28 H 1.48507 * 109.46811 * 94.26201 * 27 25 23 29 29 H 1.48496 * 109.47176 * 214.26458 * 27 25 23 30 30 H 1.48494 * 109.46973 * 334.26364 * 27 25 23 31 31 O 1.43236 * 109.90362 * 239.06583 * 2 1 3 32 32 H 1.09004 * 109.47439 * 299.29965 * 1 2 3 33 33 H 1.09000 * 109.47170 * 59.29835 * 1 2 3 34 34 H 1.09003 * 109.47525 * 179.29888 * 1 2 3 35 35 H 1.09003 * 110.84655 * 259.15108 * 4 2 1 36 36 H 1.09001 * 110.84895 * 22.56995 * 4 2 1 37 37 H 1.08994 * 111.12561 * 83.78671 * 5 4 2 38 38 H 1.09000 * 111.12553 * 207.94742 * 5 4 2 39 39 H 1.09005 * 109.47323 * 295.00123 * 8 6 5 40 40 H 1.09001 * 109.47512 * 55.00340 * 8 6 5 41 41 H 1.09001 * 109.47390 * 300.00356 * 9 8 6 42 42 H 1.09009 * 109.47334 * 59.99519 * 9 8 6 43 43 H 1.08993 * 109.62395 * 245.46957 * 13 12 10 44 44 H 1.09000 * 109.62472 * 6.03439 * 13 12 10 45 45 H 1.09001 * 109.51088 * 180.20165 * 16 14 13 46 46 H 1.09000 * 109.50621 * 300.29294 * 16 14 13 47 47 H 1.09007 * 109.41402 * 180.67940 * 17 16 14 48 48 H 1.09000 * 109.41779 * 300.53885 * 17 16 14 49 49 H 1.08999 * 109.50510 * 179.49133 * 18 17 16 50 50 H 1.09001 * 109.50050 * 59.36801 * 18 17 16 51 51 H 1.09002 * 109.62455 * 353.97469 * 21 12 10 52 52 H 1.09005 * 109.62106 * 114.54713 * 21 12 10 53 53 H 0.97008 * 119.99787 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0536 -0.7456 1.2463 5 6 3.2744 -1.5198 0.6785 6 6 2.7775 -1.8431 -0.7531 7 1 2.1455 -2.7310 -0.7428 8 6 3.9664 -2.0496 -1.6937 9 6 3.4587 -2.4890 -3.0685 10 6 4.6296 -2.6918 -3.9952 11 8 5.7591 -2.5039 -3.5954 12 7 4.4218 -3.0830 -5.2681 13 6 3.0578 -3.3202 -5.7609 14 6 2.8461 -2.4683 -7.0269 15 1 1.8966 -2.7174 -7.5007 16 6 2.8972 -0.9851 -6.6398 17 6 4.2644 -0.6698 -6.0294 18 6 5.3666 -0.9546 -7.0518 19 6 5.3250 -2.4375 -7.4408 20 1 6.0748 -2.6654 -8.1985 21 6 5.5564 -3.2832 -6.1803 22 7 3.9706 -2.7390 -7.9432 23 6 3.7672 -3.2453 -9.1992 24 1 4.5352 -3.8383 -9.6734 25 6 2.5738 -2.9961 -9.8630 26 7 1.8024 -2.0013 -9.4789 27 14 2.0627 -4.0728 -11.3015 28 1 1.1732 -5.1583 -10.8157 29 1 1.3381 -3.2498 -12.3028 30 1 3.2705 -4.6662 -11.9292 31 8 2.0176 -0.6923 -1.1552 32 1 -0.3634 0.5029 0.8962 33 1 -0.3633 0.5247 -0.8836 34 1 -0.3634 -1.0276 -0.0126 35 1 2.3656 -0.0410 2.0173 36 1 1.3004 -1.4322 1.6326 37 1 4.1626 -0.8886 0.6529 38 1 3.4593 -2.4321 1.2455 39 1 4.5186 -1.1149 -1.7921 40 1 4.6230 -2.8183 -1.2862 41 1 2.9065 -3.4236 -2.9703 42 1 2.8021 -1.7203 -3.4761 43 1 2.9340 -4.3760 -6.0016 44 1 2.3368 -3.0292 -4.9969 45 1 2.7449 -0.3717 -7.5279 46 1 2.1148 -0.7719 -5.9115 47 1 4.2993 0.3812 -5.7422 48 1 4.4197 -1.2916 -5.1478 49 1 6.3374 -0.7199 -6.6153 50 1 5.2077 -0.3411 -7.9386 51 1 6.4786 -2.9679 -5.6921 52 1 5.6250 -4.3362 -6.4536 53 1 0.9686 -1.8269 -9.9431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040016731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -61.601742 kcal Electronic energy + Delta-G solvation = -31669.209909 eV Core-core repulsion = 27734.032449 eV Total energy + Delta-G solvation = -3935.177459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.09621 -40.54530 -39.24695 -35.56610 -35.00215 -34.45781 -33.46565 -33.13936 -32.14591 -31.46777 -28.76273 -27.52507 -26.79748 -25.40192 -24.03708 -23.11235 -22.68163 -22.38626 -21.37635 -20.59361 -19.92530 -18.60786 -17.87665 -17.76408 -17.05856 -16.61223 -16.52412 -16.28179 -15.84005 -15.36135 -15.22023 -15.12074 -14.66432 -14.59063 -14.48476 -14.25504 -14.08596 -14.00297 -13.61926 -13.43965 -13.28443 -13.13370 -13.07786 -12.96454 -12.66760 -12.58875 -12.54252 -12.37970 -12.09324 -12.01085 -11.94765 -11.72861 -11.67439 -11.65219 -11.64528 -11.54359 -11.22547 -11.06974 -10.69880 -10.41626 -10.38556 -9.42540 -8.44934 -7.80617 -5.25705 1.49178 1.52129 1.59423 1.66597 2.10865 2.54402 2.89319 3.30948 3.49545 3.53386 3.67905 3.83773 3.93952 4.10032 4.15175 4.16039 4.18170 4.24600 4.30516 4.34261 4.38584 4.41657 4.47762 4.54093 4.60684 4.68390 4.74573 4.75283 4.80103 4.82053 4.84592 4.86667 4.94348 4.95166 5.01637 5.02987 5.08896 5.12159 5.16489 5.25552 5.29350 5.35091 5.35446 5.40933 5.44162 5.55888 5.69123 5.77285 5.85870 6.25719 6.42282 6.54794 7.17924 7.22237 7.85012 8.44602 9.22373 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003112 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.926259 B = 8994.685182 C = 9807.077164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.064 3.936 3 H 0.073 0.927 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.079 3.921 7 H 0.082 0.918 8 C -0.092 4.092 9 C -0.134 4.134 10 C 0.513 3.487 11 O -0.585 6.585 12 N -0.593 5.593 13 C 0.096 3.904 14 C 0.175 3.825 15 H 0.085 0.915 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.116 4.116 19 C 0.148 3.852 20 H 0.074 0.926 21 C 0.110 3.890 22 N -0.593 5.593 23 C -0.258 4.258 24 H 0.063 0.937 25 C -0.041 4.041 26 N -0.919 5.919 27 Si 0.961 3.039 28 H -0.285 1.285 29 H -0.300 1.300 30 H -0.275 1.275 31 O -0.399 6.399 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.033 0.967 46 H 0.053 0.947 47 H 0.033 0.967 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.031 0.969 51 H 0.084 0.916 52 H 0.064 0.936 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -0.206 21.757 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.006 3.994 3 H 0.091 0.909 4 C -0.181 4.181 5 C -0.187 4.187 6 C 0.022 3.978 7 H 0.100 0.900 8 C -0.130 4.130 9 C -0.173 4.173 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.325 5.325 13 C -0.028 4.028 14 C 0.068 3.932 15 H 0.103 0.897 16 C -0.143 4.143 17 C -0.172 4.172 18 C -0.156 4.156 19 C 0.040 3.960 20 H 0.092 0.908 21 C -0.014 4.014 22 N -0.315 5.315 23 C -0.388 4.388 24 H 0.081 0.919 25 C -0.237 4.237 26 N -0.564 5.564 27 Si 0.790 3.210 28 H -0.212 1.212 29 H -0.227 1.227 30 H -0.200 1.200 31 O -0.320 6.320 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.110 0.890 49 H 0.075 0.925 50 H 0.050 0.950 51 H 0.102 0.898 52 H 0.083 0.917 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.852 -0.027 21.637 21.653 hybrid contribution -0.353 -0.057 -1.460 1.504 sum -1.205 -0.084 20.176 20.212 Atomic orbital electron populations 1.22124 0.94346 1.02603 1.02583 1.22883 0.94860 0.96330 0.85283 0.90872 1.23175 0.97656 0.99944 0.97372 1.23298 0.98608 1.02022 0.94809 1.23085 0.91736 0.89363 0.93655 0.90004 1.21416 0.96669 1.02087 0.92877 1.21742 0.95958 1.04727 0.94918 1.20975 0.91288 0.75213 0.82007 1.90634 1.26035 1.53770 1.76192 1.48223 1.08248 1.65613 1.10437 1.22602 0.82099 1.00280 0.97788 1.21141 0.92870 0.91603 0.87613 0.89736 1.21667 0.95651 0.98568 0.98390 1.22103 0.95330 0.99740 1.00064 1.21833 0.97988 0.97831 0.97899 1.21335 0.88480 0.92379 0.93779 0.90831 1.21994 0.89355 0.99598 0.90477 1.44606 1.00601 1.74141 1.12160 1.19389 1.01980 1.24272 0.93141 0.91894 1.25615 0.99973 0.97974 1.00150 1.70150 1.13987 1.28612 1.43657 0.85361 0.77901 0.78392 0.79344 1.21233 1.22738 1.19992 1.88466 1.70819 1.41115 1.31550 0.89855 0.93126 0.92220 0.88793 0.89308 0.90709 0.88166 0.92570 0.89683 0.86845 0.88574 0.91596 0.87956 0.94850 0.92843 0.94802 0.89014 0.92459 0.95008 0.89772 0.91749 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.44 71.98 0.68 -1.67 16 2 C 0.06 1.08 4.15 31.06 0.13 1.21 16 3 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.14 -1.71 6.54 31.86 0.21 -1.50 16 5 C -0.15 -2.07 6.57 32.05 0.21 -1.86 16 6 C 0.08 1.46 3.41 31.26 0.11 1.57 16 7 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 8 C -0.09 -2.09 4.23 30.59 0.13 -1.96 16 9 C -0.13 -3.35 3.94 29.85 0.12 -3.23 16 10 C 0.51 16.62 5.02 87.66 0.44 17.06 16 11 O -0.58 -22.04 15.38 -3.04 -0.05 -22.09 16 12 N -0.59 -20.23 1.64 -816.38 -1.34 -21.57 16 13 C 0.10 3.30 5.84 86.66 0.51 3.80 16 14 C 0.17 7.61 2.67 45.27 0.12 7.73 16 15 H 0.08 4.24 5.90 -2.39 -0.01 4.23 16 16 C -0.10 -4.41 5.57 30.72 0.17 -4.24 16 17 C -0.13 -5.29 5.55 30.60 0.17 -5.12 16 18 C -0.12 -4.73 5.58 30.72 0.17 -4.56 16 19 C 0.15 6.09 3.62 45.09 0.16 6.25 16 20 H 0.07 3.02 8.01 -2.39 -0.02 3.00 16 21 C 0.11 3.99 5.88 86.48 0.51 4.49 16 22 N -0.59 -28.06 2.53 -644.90 -1.63 -29.69 16 23 C -0.26 -13.53 9.71 84.03 0.82 -12.72 16 24 H 0.06 3.28 7.90 -2.91 -0.02 3.26 16 25 C -0.04 -2.16 4.97 84.86 0.42 -1.74 16 26 N -0.92 -51.17 11.01 21.65 0.24 -50.93 16 27 Si 0.96 43.54 29.59 68.60 2.03 45.57 16 28 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 31 O -0.40 -9.19 10.47 -148.98 -1.56 -10.75 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.86 7.85 -2.39 -0.02 0.84 16 37 H 0.07 1.12 8.06 -2.39 -0.02 1.10 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.51 8.10 -2.38 -0.02 1.49 16 40 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 41 H 0.11 2.28 7.91 -2.39 -0.02 2.26 16 42 H 0.10 2.56 7.55 -2.38 -0.02 2.54 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.10 2.89 5.90 -2.39 -0.01 2.88 16 45 H 0.03 1.67 7.98 -2.39 -0.02 1.65 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.09 3.42 2.48 -3.49 -0.01 3.41 16 49 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.08 3.01 6.99 -2.39 -0.02 2.99 16 52 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 53 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 Total: -1.00 -63.69 391.51 3.63 -60.06 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.87 Total: 25.87 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.07 Total: 3.53 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -2.73 Total: -102.19 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.61 Total: -32.83 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -63.69 3.63 -60.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040016731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.543 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds