Wall clock time and date at job start Tue Mar 31 2020 20:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.99298 * 2 1 4 4 C 1.54106 * 109.87433 * 121.08205 * 2 1 3 5 5 C 1.54804 * 104.18745 * 121.45830 * 4 2 1 6 6 C 1.54996 * 102.09426 * 20.87425 * 5 4 2 7 7 H 1.09004 * 110.74830 * 81.54887 * 6 5 4 8 8 C 1.53001 * 110.61992 * 204.47688 * 6 5 4 9 9 C 1.52998 * 109.47169 * 180.53052 * 8 6 5 10 10 C 1.50696 * 109.47044 * 180.02562 * 9 8 6 11 11 O 1.21273 * 120.00321 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99678 * 179.97438 * 10 9 8 13 13 C 1.48281 * 120.14482 * 359.97438 * 12 10 9 14 14 C 1.53596 * 107.84820 * 126.11410 * 13 12 10 15 15 H 1.09000 * 110.60368 * 172.20620 * 14 13 12 16 16 C 1.53367 * 108.68851 * 293.79887 * 14 13 12 17 17 C 1.53015 * 109.25609 * 60.87263 * 16 14 13 18 18 C 1.53002 * 109.79595 * 60.57633 * 17 16 14 19 19 C 1.53364 * 109.27723 * 299.43810 * 18 17 16 20 20 H 1.08998 * 110.59833 * 177.49951 * 19 18 17 21 21 C 1.46955 * 120.43765 * 179.97438 * 12 10 9 22 22 N 1.47571 * 107.98490 * 56.34532 * 19 18 17 23 23 C 1.36933 * 121.61234 * 122.29823 * 22 19 18 24 24 H 1.07997 * 120.00414 * 332.49828 * 23 22 19 25 25 C 1.38813 * 120.00065 * 152.49261 * 23 22 19 26 26 N 1.31618 * 119.99991 * 341.95042 * 25 23 22 27 27 Si 1.86802 * 120.00102 * 161.94911 * 25 23 22 28 28 H 1.48500 * 109.47149 * 89.99783 * 27 25 23 29 29 H 1.48495 * 109.47157 * 210.00204 * 27 25 23 30 30 H 1.48497 * 109.47099 * 330.00376 * 27 25 23 31 31 O 1.43735 * 109.88192 * 238.90992 * 2 1 3 32 32 H 1.09004 * 109.47253 * 179.62880 * 1 2 3 33 33 H 1.08991 * 109.47350 * 299.63766 * 1 2 3 34 34 H 1.09005 * 109.47068 * 59.63504 * 1 2 3 35 35 H 1.09002 * 110.48475 * 240.13565 * 4 2 1 36 36 H 1.09001 * 110.49000 * 2.77526 * 4 2 1 37 37 H 1.09008 * 110.90321 * 262.68173 * 5 4 2 38 38 H 1.09000 * 110.90841 * 139.08206 * 5 4 2 39 39 H 1.08995 * 109.47083 * 60.52738 * 8 6 5 40 40 H 1.09007 * 109.47004 * 300.52544 * 8 6 5 41 41 H 1.08995 * 109.47374 * 59.99864 * 9 8 6 42 42 H 1.09007 * 109.46742 * 299.99652 * 9 8 6 43 43 H 1.08999 * 110.41451 * 6.36314 * 13 12 10 44 44 H 1.09000 * 109.53355 * 245.35784 * 13 12 10 45 45 H 1.08998 * 109.50990 * 300.93621 * 16 14 13 46 46 H 1.08998 * 109.54450 * 180.83051 * 16 14 13 47 47 H 1.08997 * 109.41467 * 300.48088 * 17 16 14 48 48 H 1.08993 * 109.41749 * 180.67679 * 17 16 14 49 49 H 1.09003 * 109.50573 * 59.37887 * 18 17 16 50 50 H 1.09002 * 109.50204 * 179.49818 * 18 17 16 51 51 H 1.08998 * 109.62246 * 114.51730 * 21 12 10 52 52 H 1.08994 * 109.78882 * 354.03372 * 21 12 10 53 53 H 0.97005 * 120.00080 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0539 -0.7482 1.2412 5 6 2.9195 -1.8914 0.6578 6 6 3.2379 -1.3642 -0.7645 7 1 4.0691 -0.6595 -0.7381 8 6 3.5475 -2.5246 -1.7125 9 6 3.8704 -1.9747 -3.1032 10 6 4.1748 -3.1177 -4.0370 11 8 4.1376 -4.2595 -3.6302 12 7 4.4883 -2.8708 -5.3244 13 6 4.5342 -1.4760 -5.8254 14 6 5.9078 -1.2544 -6.4761 15 1 5.9417 -0.2890 -6.9811 16 6 6.9854 -1.3319 -5.3876 17 6 6.9512 -2.7186 -4.7415 18 6 7.2336 -3.7893 -5.7973 19 6 6.1574 -3.7213 -6.8878 20 1 6.3627 -4.4468 -7.6749 21 6 4.7874 -3.9780 -6.2433 22 7 6.1484 -2.3506 -7.4343 23 6 6.3530 -2.1075 -8.7662 24 1 6.9408 -2.7948 -9.3565 25 6 5.8048 -0.9778 -9.3579 26 7 4.8188 -0.3376 -8.7660 27 14 6.4665 -0.3659 -10.9941 28 1 5.7151 -1.0071 -12.1029 29 1 6.3045 1.1080 -11.0736 30 1 7.9062 -0.7124 -11.1066 31 8 2.0188 -0.6980 -1.1575 32 1 -0.3634 -1.0277 -0.0067 33 1 -0.3633 0.5081 0.8931 34 1 -0.3633 0.5195 -0.8867 35 1 2.6618 -0.0858 1.8576 36 1 1.2245 -1.1548 1.8199 37 1 2.3538 -2.8220 0.6101 38 1 3.8330 -2.0224 1.2378 39 1 2.6819 -3.1840 -1.7744 40 1 4.4039 -3.0835 -1.3350 41 1 4.7361 -1.3153 -3.0413 42 1 3.0141 -1.4158 -3.4807 43 1 4.4006 -0.7723 -5.0038 44 1 3.7497 -1.3294 -6.5678 45 1 6.7928 -0.5725 -4.6298 46 1 7.9659 -1.1617 -5.8323 47 1 5.9674 -2.8907 -4.3050 48 1 7.7081 -2.7726 -3.9591 49 1 8.2133 -3.6131 -6.2414 50 1 7.2168 -4.7741 -5.3304 51 1 4.0222 -4.0277 -7.0179 52 1 4.8124 -4.9182 -5.6925 53 1 4.4355 0.4516 -9.1796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040016732.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:19 Heat of formation + Delta-G solvation = -60.942445 kcal Electronic energy + Delta-G solvation = -31581.749678 eV Core-core repulsion = 27646.600808 eV Total energy + Delta-G solvation = -3935.148870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.03400 -40.51871 -39.23819 -35.46396 -35.00652 -34.51373 -33.49874 -33.14718 -32.02971 -31.48393 -28.78493 -27.54449 -26.73617 -25.34732 -24.06947 -23.11960 -22.73694 -21.94911 -21.81631 -20.55427 -19.93130 -18.59409 -17.68518 -17.55982 -16.94898 -16.79550 -16.44476 -16.36190 -15.79285 -15.73676 -15.27209 -15.09277 -14.65214 -14.53413 -14.39241 -14.16041 -14.00262 -13.89148 -13.81507 -13.49754 -13.41251 -13.11330 -13.04582 -12.82891 -12.72355 -12.55865 -12.52006 -12.35057 -12.13507 -12.04239 -11.89616 -11.70860 -11.69660 -11.67298 -11.59329 -11.46937 -11.12672 -11.10282 -10.70063 -10.53302 -10.49938 -9.37231 -8.43405 -7.83750 -5.25036 1.48055 1.51629 1.59167 1.68281 2.11298 2.54281 2.91322 3.31036 3.47628 3.53973 3.74388 3.80386 4.01268 4.07176 4.11574 4.15616 4.19318 4.24735 4.27392 4.36453 4.39934 4.44586 4.49745 4.52843 4.61702 4.68036 4.72521 4.75699 4.77354 4.82834 4.85773 4.90639 4.97224 4.99852 5.02109 5.06498 5.13278 5.17110 5.20991 5.22127 5.24643 5.32049 5.33624 5.34788 5.50365 5.52283 5.63837 5.68990 5.87345 6.13401 6.41396 6.57821 7.18316 7.23717 7.84848 8.44121 9.21541 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.003054 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.769645 B = 9167.196201 C =10042.607732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 H 0.072 0.928 4 C -0.147 4.147 5 C -0.149 4.149 6 C 0.075 3.925 7 H 0.083 0.917 8 C -0.086 4.086 9 C -0.131 4.131 10 C 0.512 3.488 11 O -0.588 6.588 12 N -0.594 5.594 13 C 0.115 3.885 14 C 0.174 3.826 15 H 0.083 0.917 16 C -0.123 4.123 17 C -0.136 4.136 18 C -0.115 4.115 19 C 0.148 3.852 20 H 0.072 0.928 21 C 0.109 3.891 22 N -0.594 5.594 23 C -0.259 4.259 24 H 0.059 0.941 25 C -0.038 4.038 26 N -0.918 5.918 27 Si 0.959 3.041 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.279 1.279 31 O -0.396 6.396 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.041 0.959 47 H 0.086 0.914 48 H 0.051 0.949 49 H 0.048 0.952 50 H 0.060 0.940 51 H 0.041 0.959 52 H 0.083 0.917 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 1.398 20.171 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.003 3.997 3 H 0.090 0.910 4 C -0.184 4.184 5 C -0.186 4.186 6 C 0.018 3.982 7 H 0.101 0.899 8 C -0.124 4.124 9 C -0.171 4.171 10 C 0.303 3.697 11 O -0.470 6.470 12 N -0.326 5.326 13 C -0.008 4.008 14 C 0.067 3.933 15 H 0.101 0.899 16 C -0.162 4.162 17 C -0.174 4.174 18 C -0.154 4.154 19 C 0.041 3.959 20 H 0.090 0.910 21 C -0.016 4.016 22 N -0.316 5.316 23 C -0.389 4.389 24 H 0.077 0.923 25 C -0.234 4.234 26 N -0.563 5.563 27 Si 0.788 3.212 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.204 1.204 31 O -0.317 6.317 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.104 0.896 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.060 0.940 52 H 0.101 0.899 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.394 0.955 20.058 20.365 hybrid contribution 0.203 0.342 -1.515 1.566 sum -3.191 1.296 18.543 18.860 Atomic orbital electron populations 1.21942 0.93505 1.02425 1.02831 1.22915 0.95564 0.96020 0.85176 0.91035 1.23012 1.00523 0.97414 0.97468 1.23153 1.01318 0.98977 0.95171 1.23249 0.87960 0.93345 0.93638 0.89925 1.21294 1.02319 0.96472 0.92353 1.21699 1.04360 0.96300 0.94723 1.20963 0.75129 0.91065 0.82500 1.90618 1.55199 1.24502 1.76656 1.48609 1.66383 1.08351 1.09276 1.22437 1.00072 0.80190 0.98130 1.21016 0.90667 0.93335 0.88264 0.89908 1.22007 0.99157 0.97044 0.98022 1.22076 1.03175 0.94802 0.97354 1.21816 0.98331 0.98525 0.96686 1.21341 0.92400 0.87875 0.94301 0.91000 1.21955 0.97857 0.89891 0.91873 1.44544 1.83352 1.00203 1.03477 1.19330 1.25062 1.08230 0.86256 0.92320 1.25529 0.96602 1.00886 1.00424 1.70067 1.24371 1.21101 1.40783 0.85422 0.78122 0.77017 0.80624 1.21810 1.21777 1.20413 1.88907 1.40326 1.67912 1.34527 0.92688 0.89361 0.92886 0.89144 0.89579 0.91050 0.88527 0.92348 0.89626 0.87337 0.88593 0.88629 0.92867 0.91092 0.93991 0.89626 0.93059 0.93289 0.92093 0.94027 0.89909 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.36 71.98 0.67 -1.60 16 2 C 0.06 1.02 4.06 30.97 0.13 1.15 16 3 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.15 -1.85 6.64 31.58 0.21 -1.64 16 5 C -0.15 -2.23 6.59 31.89 0.21 -2.02 16 6 C 0.08 1.46 3.33 31.28 0.10 1.57 16 7 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 8 C -0.09 -2.06 4.28 30.59 0.13 -1.93 16 9 C -0.13 -3.53 3.92 29.85 0.12 -3.42 16 10 C 0.51 17.75 5.02 87.65 0.44 18.19 16 11 O -0.59 -23.22 15.38 -3.01 -0.05 -23.27 16 12 N -0.59 -22.26 1.67 -813.85 -1.36 -23.61 16 13 C 0.11 4.48 5.80 86.24 0.50 4.98 16 14 C 0.17 7.47 2.60 45.11 0.12 7.59 16 15 H 0.08 4.10 5.94 -2.39 -0.01 4.09 16 16 C -0.12 -4.43 5.58 30.72 0.17 -4.26 16 17 C -0.14 -4.62 5.55 30.60 0.17 -4.45 16 18 C -0.11 -4.13 5.58 30.72 0.17 -3.96 16 19 C 0.15 6.08 3.62 45.10 0.16 6.24 16 20 H 0.07 2.95 8.01 -2.39 -0.02 2.93 16 21 C 0.11 4.35 5.89 86.48 0.51 4.86 16 22 N -0.59 -27.98 2.54 -645.73 -1.64 -29.62 16 23 C -0.26 -13.60 9.71 84.03 0.82 -12.79 16 24 H 0.06 3.10 7.89 -2.91 -0.02 3.07 16 25 C -0.04 -2.00 4.98 84.86 0.42 -1.57 16 26 N -0.92 -49.59 10.70 21.65 0.23 -49.35 16 27 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 29 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 30 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 31 O -0.40 -9.27 10.56 -148.98 -1.57 -10.84 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.93 7.70 -2.39 -0.02 0.91 16 37 H 0.07 1.17 8.06 -2.38 -0.02 1.15 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 40 H 0.09 1.97 8.10 -2.38 -0.02 1.95 16 41 H 0.11 2.54 7.68 -2.39 -0.02 2.52 16 42 H 0.10 2.66 7.71 -2.38 -0.02 2.64 16 43 H 0.10 3.10 5.98 -2.39 -0.01 3.09 16 44 H 0.05 2.45 7.71 -2.39 -0.02 2.43 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.09 2.95 2.49 -3.39 -0.01 2.94 16 48 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.08 3.19 7.00 -2.39 -0.02 3.17 16 53 H 0.25 13.26 8.31 -92.70 -0.77 12.49 16 Total: -1.00 -61.71 390.78 3.57 -58.14 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.87 Total: 26.12 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.05 Total: 6.94 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -2.77 Total: -102.59 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.62 Total: -34.11 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.71 3.57 -58.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040016732.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.800 kcal (2) G-P(sol) polarization free energy of solvation -61.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds