Wall clock time and date at job start Tue Mar 31 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.33385 * 2 1 4 4 C 1.54483 * 110.46547 * 237.68618 * 2 1 3 5 5 C 1.54804 * 104.08833 * 217.15013 * 4 2 1 6 6 C 1.54480 * 103.92759 * 359.97438 * 5 4 2 7 7 H 1.09000 * 110.37224 * 265.12021 * 6 5 4 8 8 C 1.52995 * 110.36953 * 142.88819 * 6 5 4 9 9 C 1.53006 * 109.46593 * 176.55036 * 8 6 5 10 10 C 1.50700 * 109.47051 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00192 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00378 * 179.97438 * 10 9 8 13 13 C 1.46947 * 120.43886 * 359.73106 * 12 10 9 14 14 C 1.54062 * 108.30015 * 125.72201 * 13 12 10 15 15 H 1.09007 * 110.51892 * 172.87044 * 14 13 12 16 16 C 1.53375 * 108.83467 * 294.50261 * 14 13 12 17 17 C 1.53008 * 109.24688 * 60.26083 * 16 14 13 18 18 C 1.53011 * 109.80061 * 60.57703 * 17 16 14 19 19 C 1.53373 * 109.27500 * 299.44045 * 18 17 16 20 20 H 1.09005 * 110.59043 * 178.10017 * 19 18 17 21 21 C 1.46942 * 120.44484 * 179.97438 * 12 10 9 22 22 N 1.47566 * 107.98474 * 56.34039 * 19 18 17 23 23 C 1.36933 * 121.61441 * 122.28022 * 22 19 18 24 24 H 1.08003 * 119.99983 * 332.59643 * 23 22 19 25 25 C 1.38815 * 120.00041 * 152.59203 * 23 22 19 26 26 N 1.31618 * 119.99971 * 341.93969 * 25 23 22 27 27 Si 1.86796 * 119.99747 * 161.94650 * 25 23 22 28 28 H 1.48500 * 109.47326 * 89.99788 * 27 25 23 29 29 H 1.48504 * 109.47118 * 209.99870 * 27 25 23 30 30 H 1.48500 * 109.47525 * 329.99652 * 27 25 23 31 31 O 1.44430 * 110.37256 * 122.25160 * 2 1 3 32 32 H 1.08999 * 109.47064 * 299.19812 * 1 2 3 33 33 H 1.09003 * 109.47087 * 59.20313 * 1 2 3 34 34 H 1.09001 * 109.47151 * 179.20304 * 1 2 3 35 35 H 1.08999 * 110.51039 * 335.78611 * 4 2 1 36 36 H 1.08998 * 110.50961 * 98.36272 * 4 2 1 37 37 H 1.08998 * 110.59863 * 241.37350 * 5 4 2 38 38 H 1.08998 * 110.55031 * 118.57290 * 5 4 2 39 39 H 1.08997 * 109.47697 * 296.54546 * 8 6 5 40 40 H 1.08997 * 109.47667 * 56.55425 * 8 6 5 41 41 H 1.08997 * 109.47099 * 299.99762 * 9 8 6 42 42 H 1.08995 * 109.47210 * 60.00190 * 9 8 6 43 43 H 1.09004 * 109.61975 * 245.48360 * 13 12 10 44 44 H 1.08995 * 109.62302 * 6.04260 * 13 12 10 45 45 H 1.08994 * 109.50674 * 300.33171 * 16 14 13 46 46 H 1.09001 * 109.54482 * 180.21427 * 16 14 13 47 47 H 1.08996 * 109.41794 * 300.47807 * 17 16 14 48 48 H 1.08993 * 109.36226 * 180.64083 * 17 16 14 49 49 H 1.08993 * 109.50402 * 179.49977 * 18 17 16 50 50 H 1.09000 * 109.50222 * 59.37933 * 18 17 16 51 51 H 1.09001 * 109.62958 * 353.96675 * 21 12 10 52 52 H 1.09005 * 109.62750 * 114.54453 * 21 12 10 53 53 H 0.96999 * 119.99524 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3231 -1.5050 -0.6832 6 6 3.3885 -1.0838 0.8016 7 1 4.0522 -0.2279 0.9243 8 6 3.8631 -2.2531 1.6665 9 6 4.0028 -1.7899 3.1181 10 6 4.4709 -2.9414 3.9700 11 8 4.6734 -4.0258 3.4658 12 7 4.6656 -2.7662 5.2920 13 6 4.4299 -1.4549 5.9118 14 6 3.4457 -1.6428 7.0821 15 1 3.3419 -0.7160 7.6466 16 6 2.0892 -2.0879 6.5216 17 6 2.2618 -3.4126 5.7756 18 6 2.7784 -4.4852 6.7368 19 6 4.1373 -4.0494 7.2988 20 1 4.5101 -4.7837 8.0130 21 6 5.1213 -3.8825 6.1319 22 7 3.9649 -2.7292 7.9352 23 6 4.2721 -2.5222 9.2535 24 1 4.2192 -3.3414 9.9553 25 6 4.6514 -1.2595 9.6878 26 7 5.0595 -0.3596 8.8184 27 14 4.5826 -0.8376 11.5062 28 1 5.8817 -1.1745 12.1420 29 1 4.3141 0.6139 11.6678 30 1 3.4974 -1.6169 12.1546 31 8 2.0328 -0.7225 1.1451 32 1 -0.3633 0.5013 0.8971 33 1 -0.3633 0.5262 -0.8828 34 1 -0.3633 -1.0276 -0.0143 35 1 1.3313 -1.4928 -1.5769 36 1 2.3428 -0.0836 -2.0216 37 1 4.2171 -1.1763 -1.2130 38 1 3.2025 -2.5849 -0.7690 39 1 3.1365 -3.0637 1.6122 40 1 4.8285 -2.6055 1.3032 41 1 4.7294 -0.9793 3.1725 42 1 3.0375 -1.4375 3.4815 43 1 5.3719 -1.0510 6.2831 44 1 4.0012 -0.7742 5.1765 45 1 1.7127 -1.3298 5.8349 46 1 1.3822 -2.2207 7.3405 47 1 2.9758 -3.2803 4.9628 48 1 1.3010 -3.7249 5.3668 49 1 2.8912 -5.4286 6.2027 50 1 2.0699 -4.6121 7.5553 51 1 5.1474 -4.7982 5.5413 52 1 6.1164 -3.6657 6.5207 53 1 5.3242 0.5229 9.1219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040016733.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:23 Heat of formation + Delta-G solvation = -61.182302 kcal Electronic energy + Delta-G solvation = -31711.386624 eV Core-core repulsion = 27776.227353 eV Total energy + Delta-G solvation = -3935.159271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.08649 -40.48855 -39.24234 -35.50667 -35.00863 -34.55810 -33.48881 -33.09107 -32.03292 -31.51730 -28.79208 -27.55604 -26.77054 -25.34054 -23.99936 -23.13914 -22.74317 -22.14082 -21.67110 -20.61486 -19.92989 -18.58232 -17.71832 -17.45622 -16.98051 -16.85134 -16.46252 -16.29491 -15.86508 -15.68723 -15.26467 -15.13983 -14.68405 -14.52649 -14.47470 -14.14108 -14.07920 -13.93298 -13.82363 -13.45974 -13.37267 -13.08793 -12.98529 -12.82170 -12.71262 -12.57400 -12.47446 -12.35187 -12.13509 -12.05376 -11.89510 -11.73042 -11.70290 -11.67611 -11.61391 -11.45552 -11.14048 -11.12976 -10.70550 -10.61121 -10.50219 -9.37709 -8.43256 -7.83552 -5.24786 1.48361 1.52003 1.59542 1.66828 2.13349 2.54526 2.94563 3.31179 3.49257 3.53412 3.73508 3.82683 3.99121 4.07483 4.10348 4.15091 4.17577 4.23386 4.27577 4.32956 4.41005 4.43250 4.51227 4.53114 4.61240 4.67975 4.70612 4.73539 4.76522 4.81661 4.84813 4.91519 4.98063 4.99536 5.00766 5.04974 5.12180 5.15588 5.19601 5.23334 5.24267 5.29594 5.31431 5.34396 5.47962 5.51991 5.62104 5.69006 5.86677 6.07448 6.41240 6.58910 7.18225 7.22823 7.84451 8.44154 9.21883 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003098 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.784603 B = 9034.844109 C = 9575.241098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.150 4.150 6 C 0.074 3.926 7 H 0.080 0.920 8 C -0.087 4.087 9 C -0.133 4.133 10 C 0.512 3.488 11 O -0.587 6.587 12 N -0.592 5.592 13 C 0.114 3.886 14 C 0.176 3.824 15 H 0.084 0.916 16 C -0.123 4.123 17 C -0.136 4.136 18 C -0.115 4.115 19 C 0.149 3.851 20 H 0.074 0.926 21 C 0.107 3.893 22 N -0.594 5.594 23 C -0.259 4.259 24 H 0.059 0.941 25 C -0.037 4.037 26 N -0.917 5.917 27 Si 0.959 3.041 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.280 1.280 31 O -0.392 6.392 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.041 0.959 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.082 0.918 52 H 0.046 0.954 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 1.961 -19.390 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.002 3.998 3 H 0.093 0.907 4 C -0.184 4.184 5 C -0.188 4.188 6 C 0.017 3.983 7 H 0.098 0.902 8 C -0.125 4.125 9 C -0.172 4.172 10 C 0.304 3.696 11 O -0.469 6.469 12 N -0.324 5.324 13 C -0.010 4.010 14 C 0.069 3.931 15 H 0.102 0.898 16 C -0.162 4.162 17 C -0.174 4.174 18 C -0.154 4.154 19 C 0.042 3.958 20 H 0.092 0.908 21 C -0.018 4.018 22 N -0.315 5.315 23 C -0.389 4.389 24 H 0.077 0.923 25 C -0.234 4.234 26 N -0.562 5.562 27 Si 0.788 3.212 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.205 1.205 31 O -0.313 6.313 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.101 0.899 52 H 0.064 0.936 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.524 1.520 -19.367 20.196 hybrid contribution 0.311 0.277 1.448 1.507 sum -5.213 1.797 -17.919 18.748 Atomic orbital electron populations 1.21817 0.92832 1.02610 1.03020 1.23174 0.95824 0.95747 0.85054 0.90735 1.23045 0.97313 0.99898 0.98136 1.23034 0.99524 1.01544 0.94664 1.23078 0.84459 0.96661 0.94151 0.90185 1.21321 1.02066 0.96943 0.92143 1.21720 1.03800 0.96410 0.95284 1.20960 0.76365 0.90432 0.81871 1.90623 1.54632 1.28642 1.72994 1.48276 1.64649 1.12257 1.07204 1.22282 1.00549 0.82458 0.95666 1.21091 0.89530 0.92798 0.89690 0.89797 1.22000 0.98204 0.97259 0.98770 1.22070 1.00634 0.95206 0.99487 1.21825 0.97373 0.97831 0.98329 1.21317 0.93419 0.88567 0.92510 0.90823 1.21999 0.97208 0.89905 0.92639 1.44522 1.73873 1.05783 1.07370 1.19330 1.39174 0.95640 0.84803 0.92339 1.25518 0.99156 0.98164 1.00530 1.70061 1.46733 1.05596 1.33842 0.85425 0.77437 0.76700 0.81629 1.21703 1.21772 1.20528 1.89173 1.27574 1.74994 1.39534 0.92570 0.89215 0.92602 0.90565 0.88782 0.88841 0.90994 0.92195 0.89865 0.87529 0.88253 0.92501 0.88983 0.91578 0.94039 0.89605 0.93674 0.92132 0.93327 0.89932 0.93577 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.53 71.98 0.69 -1.46 16 2 C 0.06 0.98 3.92 31.10 0.12 1.11 16 3 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.15 -1.93 6.64 31.71 0.21 -1.72 16 5 C -0.15 -2.28 6.65 31.71 0.21 -2.07 16 6 C 0.07 1.45 3.25 31.10 0.10 1.55 16 7 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 8 C -0.09 -2.09 4.14 30.59 0.13 -1.96 16 9 C -0.13 -3.58 3.93 29.85 0.12 -3.46 16 10 C 0.51 17.77 5.02 87.66 0.44 18.21 16 11 O -0.59 -23.21 15.38 -3.05 -0.05 -23.26 16 12 N -0.59 -22.14 1.64 -816.41 -1.34 -23.48 16 13 C 0.11 4.45 5.78 86.65 0.50 4.95 16 14 C 0.18 7.67 2.63 45.27 0.12 7.79 16 15 H 0.08 4.20 5.96 -2.38 -0.01 4.19 16 16 C -0.12 -4.68 5.59 30.72 0.17 -4.50 16 17 C -0.14 -4.93 5.55 30.60 0.17 -4.76 16 18 C -0.11 -4.27 5.58 30.72 0.17 -4.10 16 19 C 0.15 6.17 3.61 45.10 0.16 6.33 16 20 H 0.07 3.03 8.03 -2.38 -0.02 3.01 16 21 C 0.11 4.25 5.88 86.48 0.51 4.76 16 22 N -0.59 -28.16 2.53 -644.85 -1.63 -29.80 16 23 C -0.26 -13.67 9.73 84.03 0.82 -12.85 16 24 H 0.06 3.09 7.89 -2.91 -0.02 3.07 16 25 C -0.04 -1.95 4.99 84.86 0.42 -1.53 16 26 N -0.92 -49.27 10.71 21.65 0.23 -49.04 16 27 Si 0.96 43.43 29.59 68.60 2.03 45.46 16 28 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 29 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 30 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 31 O -0.39 -9.12 10.75 -148.98 -1.60 -10.72 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 35 H 0.08 0.99 7.86 -2.39 -0.02 0.97 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.18 7.87 -2.39 -0.02 1.16 16 39 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 40 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.11 2.52 7.91 -2.39 -0.02 2.50 16 42 H 0.10 2.73 7.51 -2.39 -0.02 2.71 16 43 H 0.06 2.57 7.74 -2.38 -0.02 2.55 16 44 H 0.09 3.01 5.90 -2.39 -0.01 3.00 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.09 3.14 2.49 -3.36 -0.01 3.13 16 48 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.08 3.17 6.99 -2.39 -0.02 3.15 16 52 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 53 H 0.25 13.18 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -61.25 390.84 3.57 -57.68 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.87 Total: 26.86 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.06 Total: 6.30 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -2.74 Total: -102.31 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.65 Total: -33.98 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.25 3.57 -57.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040016733.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.502 kcal (2) G-P(sol) polarization free energy of solvation -61.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds