Wall clock time and date at job start Tue Mar 31 2020 20:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.82233 * 2 1 4 4 C 1.54375 * 109.82955 * 239.11302 * 2 1 3 5 5 C 1.55301 * 102.25412 * 219.12853 * 4 2 1 6 6 C 1.54950 * 100.94111 * 34.13513 * 5 4 2 7 7 H 1.09001 * 110.31117 * 82.57236 * 6 5 4 8 8 C 1.52997 * 110.30862 * 204.64024 * 6 5 4 9 9 C 1.53008 * 109.47166 * 184.99997 * 8 6 5 10 10 C 1.50700 * 109.47255 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99831 * 359.72598 * 10 9 8 12 12 N 1.34776 * 119.99568 * 179.97438 * 10 9 8 13 13 C 1.46949 * 120.43529 * 179.72907 * 12 10 9 14 14 C 1.53599 * 108.52398 * 125.75561 * 13 12 10 15 15 H 1.09002 * 110.59288 * 172.16726 * 14 13 12 16 16 C 1.53368 * 108.68824 * 293.75159 * 14 13 12 17 17 C 1.53008 * 109.27651 * 60.31584 * 16 14 13 18 18 C 1.53014 * 109.80127 * 60.55477 * 17 16 14 19 19 C 1.53371 * 109.25199 * 299.42544 * 18 17 16 20 20 H 1.08993 * 110.59886 * 177.53719 * 19 18 17 21 21 C 1.46948 * 120.44399 * 359.44867 * 12 10 9 22 22 N 1.47564 * 107.76945 * 51.14853 * 14 13 12 23 23 C 1.36942 * 121.61084 * 120.47224 * 22 14 13 24 24 H 1.08004 * 119.99520 * 13.82323 * 23 22 14 25 25 C 1.38809 * 120.00202 * 193.81422 * 23 22 14 26 26 N 1.31621 * 119.99838 * 134.44618 * 25 23 22 27 27 Si 1.86654 * 146.24540 * 264.77735 * 20 19 18 28 28 H 1.48503 * 58.41749 * 196.44569 * 27 20 19 29 29 H 1.48503 * 166.96605 * 173.46747 * 27 20 19 30 30 H 1.48503 * 73.12996 * 69.90870 * 27 20 19 31 31 O 1.43241 * 109.82775 * 120.98109 * 2 1 3 32 32 H 1.08998 * 109.46994 * 180.88951 * 1 2 3 33 33 H 1.09009 * 109.46949 * 300.88759 * 1 2 3 34 34 H 1.08996 * 109.47382 * 60.88330 * 1 2 3 35 35 H 1.09007 * 110.84847 * 100.94101 * 4 2 1 36 36 H 1.08998 * 110.84994 * 337.32158 * 4 2 1 37 37 H 1.08999 * 111.12979 * 276.21880 * 5 4 2 38 38 H 1.09005 * 111.16370 * 152.06535 * 5 4 2 39 39 H 1.08998 * 109.47633 * 65.00183 * 8 6 5 40 40 H 1.09000 * 109.47579 * 304.99553 * 8 6 5 41 41 H 1.08998 * 109.46693 * 59.99610 * 9 8 6 42 42 H 1.09000 * 109.46510 * 300.00211 * 9 8 6 43 43 H 1.09007 * 109.62224 * 245.46059 * 13 12 10 44 44 H 1.08992 * 109.62931 * 5.84590 * 13 12 10 45 45 H 1.09001 * 109.50335 * 180.25089 * 16 14 13 46 46 H 1.08996 * 109.50847 * 300.33807 * 16 14 13 47 47 H 1.09000 * 109.42059 * 180.65717 * 17 16 14 48 48 H 1.08998 * 109.41672 * 300.45516 * 17 16 14 49 49 H 1.08997 * 109.50525 * 59.35535 * 18 17 16 50 50 H 1.08995 * 109.50763 * 179.49274 * 18 17 16 51 51 H 1.08995 * 109.62212 * 353.94507 * 21 12 10 52 52 H 1.09000 * 109.61921 * 114.51034 * 21 12 10 53 53 H 0.96992 * 119.99844 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2730 -1.5216 -0.6780 6 6 2.7747 -1.8451 0.7531 7 1 2.1415 -2.7322 0.7417 8 6 3.9626 -2.0536 1.6945 9 6 3.4532 -2.4932 3.0687 10 6 4.6233 -2.6992 3.9958 11 8 5.7535 -2.5176 3.5954 12 7 4.4138 -3.0901 5.2685 13 6 5.5480 -3.2996 6.1792 14 6 5.3235 -2.4530 7.4410 15 1 6.0725 -2.6867 8.1977 16 6 5.3899 -0.9699 7.0560 17 6 4.2971 -0.6651 6.0294 18 6 2.9223 -0.9609 6.6325 19 6 2.8464 -2.4442 7.0151 20 1 1.8904 -2.6699 7.4874 21 6 3.0481 -3.3065 5.7658 22 7 3.9677 -2.7459 7.9444 23 6 3.7620 -3.2525 9.1999 24 1 4.5624 -3.2398 9.9250 25 6 2.5250 -3.7821 9.5407 26 7 2.4543 -4.9315 10.1781 27 14 0.9608 -2.8638 9.0943 28 1 0.4230 -3.3943 7.8158 29 1 -0.0462 -3.0494 10.1699 30 1 1.2620 -1.4176 8.9425 31 8 2.0159 -0.6936 1.1553 32 1 -0.3633 -1.0275 0.0160 33 1 -0.3633 0.5276 0.8820 34 1 -0.3634 0.5000 -0.8977 35 1 2.3672 -0.0408 -2.0166 36 1 1.3012 -1.4335 -1.6314 37 1 4.1620 -0.8915 -0.6513 38 1 3.4579 -2.4339 -1.2452 39 1 4.5158 -1.1197 1.7939 40 1 4.6185 -2.8229 1.2871 41 1 2.9000 -3.4270 2.9694 42 1 2.7973 -1.7238 3.4761 43 1 5.6092 -4.3533 6.4513 44 1 6.4723 -2.9937 5.6892 45 1 5.2365 -0.3563 7.9438 46 1 6.3665 -0.7491 6.6252 47 1 4.3497 0.3859 5.7454 48 1 4.4464 -1.2860 5.1461 49 1 2.7754 -0.3477 7.5216 50 1 2.1473 -0.7337 5.9006 51 1 2.3291 -3.0017 5.0054 52 1 2.9082 -4.3609 6.0042 53 1 1.5899 -5.3018 10.4159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040016734.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:28 Heat of formation + Delta-G solvation = -42.820193 kcal Electronic energy + Delta-G solvation = -31822.028897 eV Core-core repulsion = 27887.665867 eV Total energy + Delta-G solvation = -3934.363030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.23772 -40.56633 -39.38907 -35.60018 -35.04776 -34.64241 -33.75553 -33.14597 -32.76591 -31.50592 -28.91461 -27.69293 -26.89004 -25.34893 -24.09414 -23.67151 -22.85838 -22.39583 -21.40514 -20.69644 -19.91007 -18.71450 -18.06096 -17.89585 -17.37777 -16.92296 -16.61648 -16.48509 -15.71146 -15.64309 -15.34269 -15.16799 -14.86639 -14.55574 -14.54658 -14.29964 -14.22969 -14.09003 -13.99793 -13.75866 -13.54045 -13.33049 -13.29000 -13.05999 -12.81046 -12.59420 -12.57374 -12.36407 -12.10658 -12.03112 -11.99301 -11.93264 -11.73481 -11.69505 -11.65766 -11.55852 -11.33981 -10.89828 -10.70158 -10.49659 -10.39423 -9.62430 -8.90239 -8.19168 -5.18236 1.25127 1.44652 1.49416 1.62104 2.01004 2.41055 2.80508 2.87901 3.23133 3.42937 3.66015 3.80377 3.91032 3.92941 3.98628 4.02134 4.07447 4.14848 4.15846 4.21401 4.29917 4.35972 4.42099 4.47013 4.49720 4.57060 4.59375 4.65266 4.69839 4.71472 4.76872 4.80326 4.81435 4.87452 4.94519 4.96925 5.00335 5.08071 5.10684 5.13646 5.15628 5.20122 5.26568 5.27896 5.34388 5.40159 5.48453 5.56684 5.84203 6.04408 6.23873 6.46860 6.81012 7.16364 7.65319 8.15526 8.89785 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003505 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.422012 B = 7985.585899 C = 8897.538907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.065 3.935 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.150 4.150 6 C 0.079 3.921 7 H 0.080 0.920 8 C -0.092 4.092 9 C -0.137 4.137 10 C 0.517 3.483 11 O -0.578 6.578 12 N -0.594 5.594 13 C 0.109 3.891 14 C 0.160 3.840 15 H 0.077 0.923 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.125 4.125 19 C 0.128 3.872 20 H 0.060 0.940 21 C 0.105 3.895 22 N -0.607 5.607 23 C -0.271 4.271 24 H 0.063 0.937 25 C -0.010 4.010 26 N -0.903 5.903 27 Si 0.898 3.102 28 H -0.268 1.268 29 H -0.316 1.316 30 H -0.271 1.271 31 O -0.397 6.397 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.090 0.910 49 H 0.042 0.958 50 H 0.078 0.922 51 H 0.111 0.889 52 H 0.063 0.937 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 7.798 -24.661 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.094 0.906 4 C -0.182 4.182 5 C -0.188 4.188 6 C 0.021 3.979 7 H 0.098 0.902 8 C -0.130 4.130 9 C -0.177 4.177 10 C 0.309 3.691 11 O -0.459 6.459 12 N -0.327 5.327 13 C -0.016 4.016 14 C 0.053 3.947 15 H 0.095 0.905 16 C -0.161 4.161 17 C -0.170 4.170 18 C -0.164 4.164 19 C 0.022 3.978 20 H 0.077 0.923 21 C -0.020 4.020 22 N -0.330 5.330 23 C -0.398 4.398 24 H 0.081 0.919 25 C -0.209 4.209 26 N -0.545 5.545 27 Si 0.729 3.271 28 H -0.196 1.196 29 H -0.246 1.246 30 H -0.197 1.197 31 O -0.317 6.317 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.108 0.892 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.129 0.871 52 H 0.082 0.918 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.541 7.790 -24.521 25.775 hybrid contribution -0.911 0.321 0.971 1.369 sum -2.452 8.111 -23.550 25.028 Atomic orbital electron populations 1.22130 0.94435 1.02532 1.02611 1.22873 0.94781 0.96369 0.85221 0.90644 1.23179 0.97655 0.99917 0.97489 1.23302 0.98664 1.01973 0.94846 1.23073 0.91780 0.89327 0.93673 0.90207 1.21413 0.96631 1.02241 0.92732 1.21787 0.96007 1.04852 0.95011 1.20964 0.91401 0.75054 0.81718 1.90646 1.25867 1.53498 1.75922 1.48164 1.07624 1.66138 1.10745 1.22031 0.89527 0.99573 0.90438 1.21216 0.86443 0.93234 0.93789 0.90531 1.21918 0.98882 0.96743 0.98573 1.22019 0.93918 1.01029 1.00003 1.21966 0.98369 0.95983 1.00092 1.21630 0.91761 0.93988 0.90379 0.92309 1.22136 0.82978 0.99972 0.96883 1.45102 1.00857 1.75185 1.11893 1.18598 0.98318 1.31879 0.91003 0.91881 1.25004 1.00242 0.95708 0.99937 1.70438 1.25803 1.14305 1.43906 0.86602 0.82468 0.82017 0.76021 1.19605 1.24605 1.19674 1.88448 1.70893 1.40926 1.31477 0.92361 0.92985 0.89950 0.88776 0.89488 0.90570 0.88362 0.92140 0.89831 0.87047 0.88002 0.92489 0.88957 0.93491 0.91176 0.92772 0.89202 0.93872 0.90392 0.87140 0.91835 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.44 71.98 0.68 -1.44 16 2 C 0.06 0.99 4.16 31.06 0.13 1.12 16 3 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.14 -1.55 6.54 31.85 0.21 -1.34 16 5 C -0.15 -1.89 6.57 32.05 0.21 -1.68 16 6 C 0.08 1.33 3.40 31.26 0.11 1.44 16 7 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 8 C -0.09 -1.90 4.23 30.60 0.13 -1.77 16 9 C -0.14 -3.13 3.96 29.85 0.12 -3.01 16 10 C 0.52 15.64 4.99 87.66 0.44 16.08 16 11 O -0.58 -20.47 15.37 -3.01 -0.05 -20.52 16 12 N -0.59 -19.53 1.66 -818.13 -1.36 -20.89 16 13 C 0.11 3.86 5.88 86.50 0.51 4.37 16 14 C 0.16 6.26 3.58 45.11 0.16 6.42 16 15 H 0.08 3.05 8.00 -2.39 -0.02 3.03 16 16 C -0.12 -4.25 5.59 30.72 0.17 -4.08 16 17 C -0.13 -4.36 5.55 30.60 0.17 -4.19 16 18 C -0.13 -4.45 5.54 30.72 0.17 -4.28 16 19 C 0.13 5.18 2.62 44.73 0.12 5.30 16 20 H 0.06 2.63 1.51 -2.39 0.00 2.63 16 21 C 0.10 3.53 5.81 86.34 0.50 4.04 16 22 N -0.61 -27.90 2.61 -643.72 -1.68 -29.58 16 23 C -0.27 -14.90 10.08 84.03 0.85 -14.05 16 24 H 0.06 3.74 8.04 -2.91 -0.02 3.72 16 25 C -0.01 -0.56 5.33 84.86 0.45 -0.11 16 26 N -0.90 -54.23 13.97 21.65 0.30 -53.93 16 27 Si 0.90 43.59 24.86 68.60 1.71 45.29 16 28 H -0.27 -12.01 6.78 99.48 0.67 -11.34 16 29 H -0.32 -15.85 7.11 99.48 0.71 -15.14 16 30 H -0.27 -12.87 6.76 99.48 0.67 -12.20 16 31 O -0.40 -8.24 10.47 -148.98 -1.56 -9.80 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.09 0.77 7.85 -2.39 -0.02 0.75 16 37 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 41 H 0.11 2.10 7.95 -2.39 -0.02 2.08 16 42 H 0.10 2.34 7.52 -2.39 -0.02 2.32 16 43 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.09 3.15 6.98 -2.39 -0.02 3.13 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 2.92 2.55 -2.58 -0.01 2.92 16 49 H 0.04 1.69 7.90 -2.39 -0.02 1.67 16 50 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 51 H 0.11 2.93 5.90 -2.39 -0.01 2.91 16 52 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 53 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -66.72 385.50 3.30 -63.43 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.82 Total: 23.20 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.12 Total: 2.80 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -2.74 Total: -104.40 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.61 Total: -30.32 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.71 Total: 45.29 kcal Total: -66.72 3.30 -63.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040016734.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.606 kcal (2) G-P(sol) polarization free energy of solvation -66.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds