Wall clock time and date at job start Tue Mar 31 2020 21:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49226 * 2 1 4 4 O 1.42905 * 109.48425 * 239.96993 * 2 1 3 5 5 C 1.42905 * 114.10031 * 178.86060 * 4 2 1 6 6 C 1.53089 * 109.41715 * 61.15513 * 5 4 2 7 7 C 1.53175 * 109.16373 * 302.39327 * 6 5 4 8 8 C 1.53097 * 109.47997 * 120.02698 * 2 1 3 9 9 H 1.08993 * 109.57202 * 297.52499 * 8 2 1 10 10 C 1.50694 * 109.52127 * 57.68891 * 8 2 1 11 11 O 1.21281 * 120.00275 * 33.07526 * 10 8 2 12 12 N 1.34780 * 119.99935 * 213.07062 * 10 8 2 13 13 C 1.47080 * 125.62849 * 355.00458 * 12 10 8 14 14 C 1.54465 * 107.30137 * 178.97692 * 13 12 10 15 15 C 1.54372 * 102.86834 * 338.49756 * 14 13 12 16 16 C 1.47564 * 125.63144 * 174.96987 * 12 10 8 17 17 C 1.52104 * 110.55805 * 152.60507 * 15 14 13 18 18 C 1.53348 * 109.44774 * 182.77208 * 17 15 14 19 19 N 1.46928 * 108.68546 * 306.69783 * 18 17 15 20 20 C 1.36934 * 120.55733 * 234.32980 * 19 18 17 21 21 H 1.07993 * 120.00561 * 151.76813 * 20 19 18 22 22 C 1.38814 * 119.99885 * 331.77225 * 20 19 18 23 23 N 1.31615 * 120.00294 * 334.41911 * 22 20 19 24 24 Si 1.86798 * 120.00034 * 154.42017 * 22 20 19 25 25 H 1.48496 * 109.47258 * 84.99835 * 24 22 20 26 26 H 1.48504 * 109.47431 * 204.99776 * 24 22 20 27 27 H 1.48502 * 109.47093 * 324.99495 * 24 22 20 28 28 C 1.46939 * 118.88882 * 54.35718 * 19 18 17 29 29 C 1.52110 * 110.54729 * 276.69142 * 15 14 13 30 30 H 1.08998 * 109.46966 * 299.97112 * 1 2 3 31 31 H 1.09001 * 109.46606 * 59.97483 * 1 2 3 32 32 H 1.09003 * 109.46756 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47657 * 301.17290 * 5 4 2 34 34 H 1.08999 * 109.48093 * 181.14286 * 5 4 2 35 35 H 1.08991 * 109.52408 * 182.48725 * 6 5 4 36 36 H 1.09007 * 109.57215 * 62.32926 * 6 5 4 37 37 H 1.08992 * 109.54836 * 297.11285 * 7 6 5 38 38 H 1.09003 * 109.61649 * 176.88587 * 7 6 5 39 39 H 1.09000 * 109.87585 * 298.40371 * 13 12 10 40 40 H 1.09003 * 109.87959 * 59.55111 * 13 12 10 41 41 H 1.09003 * 110.73330 * 96.84026 * 14 13 12 42 42 H 1.08996 * 110.73237 * 220.15325 * 14 13 12 43 43 H 1.09003 * 110.38035 * 322.18499 * 16 12 10 44 44 H 1.09005 * 110.37312 * 84.41488 * 16 12 10 45 45 H 1.09008 * 109.47304 * 302.75977 * 17 15 14 46 46 H 1.08995 * 109.47597 * 62.77608 * 17 15 14 47 47 H 1.08996 * 109.59741 * 186.94178 * 18 17 15 48 48 H 1.09000 * 109.73642 * 66.54098 * 18 17 15 49 49 H 0.96996 * 120.00873 * 180.02562 * 23 22 20 50 50 H 1.09006 * 109.60218 * 185.87820 * 28 19 18 51 51 H 1.09002 * 109.73406 * 65.48141 * 28 19 18 52 52 H 1.09004 * 109.47171 * 297.21437 * 29 15 14 53 53 H 1.08999 * 109.47572 * 57.21604 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0066 -0.6742 -1.1664 5 6 3.4308 -0.7094 -1.2790 6 6 4.0177 -1.4600 -0.0808 7 6 3.5712 -0.7708 1.2122 8 6 2.0405 -0.7223 1.2496 9 1 1.7149 -0.1852 2.1404 10 6 1.4927 -2.1258 1.2791 11 8 1.3041 -2.7251 0.2418 12 7 1.2124 -2.7151 2.4584 13 6 1.4880 -2.1473 3.7869 14 6 0.9750 -3.1598 4.8346 15 6 -0.0522 -3.9904 4.0359 16 6 0.5777 -4.0362 2.6299 17 6 -0.1728 -5.3914 4.6158 18 6 -1.1459 -6.2147 3.7632 19 7 -2.4092 -5.4742 3.6433 20 6 -3.5961 -6.0613 3.9921 21 1 -4.4173 -5.4531 4.3415 22 6 -3.7438 -7.4383 3.8968 23 7 -3.0083 -8.1217 3.0457 24 14 -4.9863 -8.3213 4.9764 25 1 -6.3231 -8.2763 4.3313 26 1 -4.5703 -9.7357 5.1549 27 1 -5.0534 -7.6541 6.3014 28 6 -2.3778 -4.0933 3.1421 29 6 -1.3978 -3.2822 3.9982 30 1 -0.3633 0.5134 0.8902 31 1 -0.3632 0.5142 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8193 0.3090 -1.2958 34 1 3.7101 -1.2203 -2.2004 35 1 5.1059 -1.4497 -0.1420 36 1 3.6623 -2.4905 -0.0858 37 1 3.9689 0.2436 1.2409 38 1 3.9392 -1.3313 2.0716 39 1 2.5605 -1.9973 3.9106 40 1 0.9636 -1.1985 3.9006 41 1 1.7885 -3.7916 5.1913 42 1 0.4925 -2.6445 5.6651 43 1 -0.1926 -4.1883 1.8737 44 1 1.3258 -4.8269 2.5728 45 1 0.8062 -5.8706 4.6148 46 1 -0.5468 -5.3307 5.6377 47 1 -1.3296 -7.1758 4.2434 48 1 -0.7212 -6.3763 2.7724 49 1 -3.1117 -9.0838 2.9788 50 1 -3.3737 -3.6559 3.2127 51 1 -2.0482 -4.0862 2.1031 52 1 -1.7893 -3.1915 5.0115 53 1 -1.2738 -2.2891 3.5664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040678012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:53 Heat of formation + Delta-G solvation = -85.052045 kcal Electronic energy + Delta-G solvation = -31841.064685 eV Core-core repulsion = 27904.870345 eV Total energy + Delta-G solvation = -3936.194341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.92201 -40.70670 -38.81312 -37.31914 -34.95081 -34.40204 -33.72204 -32.80158 -31.66805 -30.54565 -29.25092 -28.01666 -26.50781 -25.32725 -24.34737 -23.82175 -23.20500 -22.37720 -22.06016 -19.74631 -19.61259 -18.44951 -18.03534 -17.25617 -17.18433 -16.82583 -16.61831 -15.98817 -15.92865 -15.66419 -15.48796 -15.40126 -14.90990 -14.69436 -14.49847 -14.32625 -14.15160 -13.81504 -13.61863 -13.47653 -13.34444 -13.18265 -13.07879 -13.02902 -12.94743 -12.72669 -12.62685 -12.52656 -12.45013 -12.08111 -12.02145 -11.94557 -11.87005 -11.66288 -11.43645 -11.35263 -11.09282 -11.01031 -10.61211 -10.51027 -10.23082 -9.53563 -8.71475 -7.91467 -5.32181 1.44654 1.46686 1.57047 1.73949 2.05046 2.50650 2.94082 3.19890 3.40981 3.60107 3.63245 3.70046 3.77124 3.83504 3.87393 4.02158 4.08846 4.27355 4.28936 4.32590 4.37100 4.39622 4.44541 4.50241 4.60413 4.63361 4.70557 4.72585 4.73680 4.74688 4.77453 4.81969 4.85976 4.92342 4.94570 5.04224 5.05567 5.11561 5.13655 5.17438 5.25703 5.32011 5.32465 5.35273 5.36608 5.38775 5.49199 5.64850 5.71937 6.35251 6.46067 6.67024 7.11562 7.32236 7.83996 8.37976 9.14673 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.002964 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.413839 B = 9445.566354 C = 9776.052701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.100 3.900 3 H 0.098 0.902 4 O -0.395 6.395 5 C 0.059 3.941 6 C -0.160 4.160 7 C -0.104 4.104 8 C -0.131 4.131 9 H 0.127 0.873 10 C 0.526 3.474 11 O -0.571 6.571 12 N -0.620 5.620 13 C 0.099 3.901 14 C -0.113 4.113 15 C -0.053 4.053 16 C 0.124 3.876 17 C -0.110 4.110 18 C 0.179 3.821 19 N -0.605 5.605 20 C -0.271 4.271 21 H 0.065 0.935 22 C -0.046 4.046 23 N -0.931 5.931 24 Si 0.962 3.038 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.267 1.267 28 C 0.140 3.860 29 C -0.098 4.098 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.043 0.957 48 H -0.014 1.014 49 H 0.250 0.750 50 H 0.048 0.952 51 H -0.007 1.007 52 H 0.071 0.929 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.367 21.964 3.162 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 H 0.116 0.884 4 O -0.314 6.314 5 C -0.017 4.017 6 C -0.198 4.198 7 C -0.141 4.141 8 C -0.152 4.152 9 H 0.145 0.855 10 C 0.315 3.685 11 O -0.449 6.449 12 N -0.354 5.354 13 C -0.022 4.022 14 C -0.151 4.151 15 C -0.054 4.054 16 C 0.001 3.999 17 C -0.150 4.150 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.401 4.401 21 H 0.083 0.917 22 C -0.243 4.243 23 N -0.576 5.576 24 Si 0.790 3.210 25 H -0.211 1.211 26 H -0.219 1.219 27 H -0.192 1.192 28 C 0.015 3.985 29 C -0.137 4.137 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.004 0.996 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.010 0.990 52 H 0.090 0.910 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.159 21.455 2.361 27.574 hybrid contribution -0.944 -1.645 -0.163 1.904 sum 16.215 19.810 2.198 25.694 Atomic orbital electron populations 1.21864 0.93892 1.01479 1.03572 1.22076 0.94820 0.95230 0.83649 0.88398 1.88049 1.22001 1.78548 1.42818 1.22636 0.80531 1.00276 0.98272 1.22203 1.01928 0.99480 0.96205 1.21559 0.91042 1.03558 0.97973 1.22156 0.98793 0.91887 1.02411 0.85464 1.20814 0.77192 0.88942 0.81514 1.90744 1.54028 1.66563 1.33543 1.48796 1.60532 1.19175 1.06891 1.22341 1.01956 0.97744 0.80168 1.22697 0.97948 0.97029 0.97429 1.20888 0.95373 0.95929 0.93245 1.21985 0.95248 0.85139 0.97540 1.21811 0.98940 0.94589 0.99622 1.20541 0.85084 0.94326 0.94760 1.44321 1.02804 1.10808 1.74922 1.19443 0.93196 0.90747 1.36699 0.91700 1.25774 1.00811 0.98595 0.99087 1.70300 1.45535 1.06800 1.34920 0.85388 0.78575 0.77334 0.79724 1.21110 1.21880 1.19233 1.21061 0.97767 0.85760 0.93909 1.21611 0.93904 0.97586 1.00584 0.88742 0.91481 0.95287 0.90679 0.89804 0.88662 0.94537 0.87162 0.90311 0.89058 0.89178 0.89448 0.87700 0.94577 0.93356 0.91112 0.91309 0.93885 0.99597 0.94118 0.93297 0.98962 0.90987 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.26 71.98 0.67 -2.73 16 2 C 0.10 2.02 2.86 30.63 0.09 2.11 16 3 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 4 O -0.39 -10.74 8.96 -129.47 -1.16 -11.90 16 5 C 0.06 1.16 6.84 72.01 0.49 1.65 16 6 C -0.16 -2.99 5.75 30.68 0.18 -2.81 16 7 C -0.10 -1.42 5.52 30.72 0.17 -1.25 16 8 C -0.13 -2.39 2.20 -11.45 -0.03 -2.42 16 9 H 0.13 1.48 6.97 -2.39 -0.02 1.46 16 10 C 0.53 15.28 5.23 87.65 0.46 15.74 16 11 O -0.57 -23.08 13.65 16.47 0.22 -22.85 16 12 N -0.62 -16.61 3.32 -812.53 -2.70 -19.30 16 13 C 0.10 1.63 5.86 86.77 0.51 2.14 16 14 C -0.11 -2.10 5.89 31.56 0.19 -1.92 16 15 C -0.05 -1.59 0.54 -51.92 -0.03 -1.61 16 16 C 0.12 4.27 4.87 86.56 0.42 4.69 16 17 C -0.11 -3.89 4.83 30.41 0.15 -3.75 16 18 C 0.18 8.77 5.13 86.41 0.44 9.21 16 19 N -0.60 -31.38 2.97 -698.49 -2.08 -33.45 16 20 C -0.27 -15.36 9.50 84.03 0.80 -14.56 16 21 H 0.07 3.59 7.95 -2.91 -0.02 3.56 16 22 C -0.05 -2.67 4.66 84.86 0.40 -2.28 16 23 N -0.93 -57.39 11.78 21.65 0.26 -57.14 16 24 Si 0.96 45.60 29.62 68.60 2.03 47.63 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.14 6.18 6.20 86.41 0.54 6.72 16 29 C -0.10 -3.15 4.83 30.41 0.15 -3.00 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 0.90 6.58 -2.39 -0.02 0.88 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.00 6.73 -2.38 -0.02 0.99 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 39 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 40 H 0.09 1.07 7.64 -2.39 -0.02 1.06 16 41 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 42 H 0.10 1.53 8.01 -2.39 -0.02 1.51 16 43 H 0.04 1.59 6.15 -2.39 -0.01 1.57 16 44 H 0.05 1.74 7.98 -2.38 -0.02 1.73 16 45 H 0.07 2.21 8.10 -2.38 -0.02 2.19 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.04 2.37 6.31 -2.39 -0.02 2.35 16 48 H -0.01 -0.77 7.65 -2.39 -0.02 -0.78 16 49 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 50 H 0.05 2.13 7.93 -2.38 -0.02 2.11 16 51 H -0.01 -0.36 6.58 -2.39 -0.02 -0.38 16 52 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.07 1.99 7.84 -2.39 -0.02 1.97 16 Total: -1.00 -80.09 389.82 3.03 -77.06 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.87 Total: 14.03 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.58 Total: 5.93 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -4.52 Total: -109.89 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.94 Total: -34.75 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -80.09 3.03 -77.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040678012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.997 kcal (2) G-P(sol) polarization free energy of solvation -80.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds