Wall clock time and date at job start Tue Mar 31 2020 21:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.49746 * 2 1 4 4 O 1.42903 * 109.48067 * 239.97206 * 2 1 3 5 5 C 1.42908 * 114.09754 * 178.86345 * 4 2 1 6 6 C 1.53089 * 109.41896 * 61.15697 * 5 4 2 7 7 C 1.53176 * 109.16166 * 302.39290 * 6 5 4 8 8 C 1.53094 * 109.48277 * 120.03232 * 2 1 3 9 9 H 1.08997 * 109.57310 * 57.64893 * 8 2 1 10 10 C 1.50707 * 109.51962 * 297.49615 * 8 2 1 11 11 O 1.21282 * 119.99814 * 336.75133 * 10 8 2 12 12 N 1.34777 * 120.00101 * 156.75290 * 10 8 2 13 13 C 1.47081 * 125.63021 * 176.18874 * 12 10 8 14 14 C 1.54455 * 107.29858 * 179.00746 * 13 12 10 15 15 C 1.54393 * 102.87493 * 338.50229 * 14 13 12 16 16 C 1.47576 * 125.62409 * 356.18927 * 12 10 8 17 17 C 1.52104 * 110.51444 * 152.62115 * 15 14 13 18 18 C 1.53344 * 109.44460 * 64.11540 * 17 15 14 19 19 N 1.46933 * 108.68965 * 53.29996 * 18 17 15 20 20 C 1.36935 * 120.55444 * 125.64986 * 19 18 17 21 21 H 1.07999 * 119.99856 * 217.89133 * 20 19 18 22 22 C 1.38803 * 120.00123 * 37.89733 * 20 19 18 23 23 N 1.31625 * 120.00163 * 23.65154 * 22 20 19 24 24 Si 1.86803 * 120.00175 * 203.65302 * 22 20 19 25 25 H 1.48502 * 109.47134 * 59.99817 * 24 22 20 26 26 H 1.48497 * 109.47264 * 299.99880 * 24 22 20 27 27 H 1.48494 * 109.47367 * 179.97438 * 24 22 20 28 28 C 1.46931 * 118.89048 * 305.92515 * 19 18 17 29 29 C 1.52110 * 110.51466 * 276.65977 * 15 14 13 30 30 H 1.09005 * 109.47040 * 299.96889 * 1 2 3 31 31 H 1.09004 * 109.47123 * 59.96854 * 1 2 3 32 32 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47815 * 301.17113 * 5 4 2 34 34 H 1.09005 * 109.48641 * 181.14882 * 5 4 2 35 35 H 1.08996 * 109.52309 * 182.48540 * 6 5 4 36 36 H 1.08998 * 109.51945 * 62.29550 * 6 5 4 37 37 H 1.08999 * 109.54536 * 297.11009 * 7 6 5 38 38 H 1.08999 * 109.61826 * 176.88724 * 7 6 5 39 39 H 1.09008 * 109.87503 * 59.58795 * 13 12 10 40 40 H 1.08998 * 110.00135 * 298.50749 * 13 12 10 41 41 H 1.09004 * 110.73761 * 220.15576 * 14 13 12 42 42 H 1.09003 * 110.88567 * 96.91881 * 14 13 12 43 43 H 1.08998 * 110.37906 * 84.49748 * 16 12 10 44 44 H 1.09000 * 110.37923 * 322.14690 * 16 12 10 45 45 H 1.09002 * 109.47730 * 304.12543 * 17 15 14 46 46 H 1.09001 * 109.47782 * 184.10367 * 17 15 14 47 47 H 1.09000 * 109.60461 * 293.54033 * 18 17 15 48 48 H 1.08999 * 109.60027 * 173.05780 * 18 17 15 49 49 H 0.97000 * 119.99807 * 6.05003 * 23 22 20 50 50 H 1.08996 * 109.60216 * 173.83730 * 28 19 18 51 51 H 1.09003 * 109.59919 * 294.30936 * 28 19 18 52 52 H 1.09009 * 109.47270 * 55.87354 * 29 15 14 53 53 H 1.08996 * 109.47863 * 175.88202 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4307 -0.7094 -1.2790 6 6 4.0176 -1.4602 -0.0809 7 6 3.5711 -0.7710 1.2121 8 6 2.0405 -0.7223 1.2495 9 1 1.6442 -1.7375 1.2720 10 6 1.5902 0.0214 2.4805 11 8 1.3120 1.1998 2.4091 12 7 1.4967 -0.6228 3.6606 13 6 1.1489 -0.0046 4.9491 14 6 1.1396 -1.1275 6.0096 15 6 0.9470 -2.4019 5.1596 16 6 1.7263 -2.0650 3.8732 17 6 1.5586 -3.6064 5.8587 18 6 0.8104 -3.8692 7.1711 19 7 -0.6262 -3.9743 6.8811 20 6 -1.3374 -5.0757 7.2764 21 1 -2.1099 -5.4776 6.6376 22 6 -1.0655 -5.6757 8.4983 23 7 -0.5003 -4.9797 9.4619 24 14 -1.5016 -7.4709 8.7750 25 1 -0.7752 -8.3140 7.7918 26 1 -2.9646 -7.6573 8.6016 27 1 -1.1112 -7.8686 10.1514 28 6 -1.2857 -2.8807 6.1545 29 6 -0.5268 -2.6207 4.8533 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 3.8193 0.3089 -1.2958 34 1 3.7101 -1.2202 -2.2005 35 1 5.1058 -1.4499 -0.1421 36 1 3.6612 -2.4902 -0.0864 37 1 3.9689 0.2434 1.2409 38 1 3.9391 -1.3315 2.0715 39 1 0.1619 0.4536 4.8859 40 1 1.8909 0.7488 5.2134 41 1 0.3086 -0.9968 6.7028 42 1 2.0871 -1.1619 6.5474 43 1 2.7892 -2.2640 4.0103 44 1 1.3373 -2.6393 3.0324 45 1 2.6088 -3.4079 6.0726 46 1 1.4780 -4.4810 5.2131 47 1 0.9844 -3.0448 7.8627 48 1 1.1633 -4.8010 7.6130 49 1 -0.3538 -4.0273 9.3506 50 1 -2.3140 -3.1610 5.9265 51 1 -1.2773 -1.9782 6.7658 52 1 -0.9321 -1.7341 4.3655 53 1 -0.6370 -3.4811 4.1932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040678014.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:02 Heat of formation + Delta-G solvation = -95.965946 kcal Electronic energy + Delta-G solvation = -31377.181378 eV Core-core repulsion = 27440.513775 eV Total energy + Delta-G solvation = -3936.667603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.98117 -40.75744 -39.34443 -37.55106 -35.01734 -34.64060 -33.72774 -32.60369 -31.77301 -30.94676 -28.95596 -28.36342 -26.07847 -25.62948 -24.32592 -23.92852 -23.14685 -22.69228 -21.64634 -20.19922 -19.86441 -18.93916 -18.32934 -17.30224 -17.23575 -16.88233 -16.32023 -16.17862 -16.03048 -15.65847 -15.62648 -15.38659 -15.19083 -14.91319 -14.64926 -14.53583 -14.26575 -14.03911 -13.82038 -13.62616 -13.54800 -13.35050 -13.19606 -13.12494 -12.84316 -12.60518 -12.49578 -12.39383 -12.23760 -12.05543 -12.01355 -11.99834 -11.90813 -11.69320 -11.46798 -11.35389 -11.23376 -11.12924 -10.82779 -10.45327 -10.44000 -9.72999 -8.85129 -8.16328 -5.49881 1.48232 1.59443 1.65660 1.84464 1.85051 2.65718 2.75435 3.21946 3.31529 3.42200 3.49403 3.58023 3.66888 3.73905 3.78069 3.92362 4.08645 4.10714 4.15962 4.20440 4.26176 4.30265 4.37369 4.41055 4.51968 4.54700 4.55970 4.67287 4.68501 4.69780 4.73349 4.76318 4.79699 4.83544 4.89206 4.92561 4.96865 5.01555 5.04654 5.07573 5.16899 5.18019 5.21314 5.24369 5.27637 5.28369 5.33522 5.54664 5.93372 6.20388 6.42146 6.43270 7.02638 7.13444 7.78769 8.27555 8.99427 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002728 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.056588 B =10261.299130 C =10555.597464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.109 3.891 3 H 0.057 0.943 4 O -0.390 6.390 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.109 4.109 8 C -0.129 4.129 9 H 0.108 0.892 10 C 0.537 3.463 11 O -0.579 6.579 12 N -0.610 5.610 13 C 0.114 3.886 14 C -0.117 4.117 15 C -0.054 4.054 16 C 0.115 3.885 17 C -0.107 4.107 18 C 0.164 3.836 19 N -0.613 5.613 20 C -0.360 4.360 21 H 0.039 0.961 22 C -0.065 4.065 23 N -0.935 5.935 24 Si 1.112 2.888 25 H -0.277 1.277 26 H -0.278 1.278 27 H -0.292 1.292 28 C 0.145 3.855 29 C -0.102 4.102 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.009 0.991 48 H 0.033 0.967 49 H 0.254 0.746 50 H 0.039 0.961 51 H 0.015 0.985 52 H 0.064 0.936 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 7.817 -19.255 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.051 3.949 3 H 0.075 0.925 4 O -0.310 6.310 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.147 4.147 8 C -0.151 4.151 9 H 0.126 0.874 10 C 0.327 3.673 11 O -0.459 6.459 12 N -0.342 5.342 13 C -0.008 4.008 14 C -0.155 4.155 15 C -0.054 4.054 16 C -0.007 4.007 17 C -0.146 4.146 18 C 0.038 3.962 19 N -0.338 5.338 20 C -0.491 4.491 21 H 0.056 0.944 22 C -0.263 4.263 23 N -0.576 5.576 24 Si 0.936 3.064 25 H -0.203 1.203 26 H -0.204 1.204 27 H -0.218 1.218 28 C 0.020 3.980 29 C -0.141 4.141 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.032 0.968 52 H 0.082 0.918 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.855 7.146 -18.423 22.546 hybrid contribution -0.443 1.554 -0.249 1.635 sum 10.411 8.700 -18.672 23.081 Atomic orbital electron populations 1.21780 0.92943 1.02883 1.02693 1.21722 0.95281 0.94479 0.83444 0.92499 1.87943 1.22786 1.78045 1.42194 1.22857 0.79773 1.00407 0.99666 1.22171 1.02613 1.00354 0.93316 1.21555 0.90950 1.02017 1.00190 1.21981 0.99467 1.01381 0.92223 0.87411 1.20440 0.76526 0.86628 0.83741 1.90675 1.51927 1.17683 1.85651 1.48607 1.67961 1.10334 1.07303 1.21897 1.00400 0.95999 0.82534 1.22635 1.03197 0.92945 0.96688 1.20878 0.95078 0.94917 0.94562 1.22475 1.00863 0.79722 0.97683 1.21732 0.99004 0.96878 0.97004 1.20770 0.83559 0.97458 0.94367 1.44241 1.04200 1.18596 1.66748 1.20062 1.20748 1.06940 1.01307 0.94375 1.27276 0.99052 1.09258 0.90722 1.70903 1.45786 1.08570 1.32302 0.82910 0.76533 0.71341 0.75615 1.20267 1.20428 1.21788 1.20954 0.95073 0.89821 0.92189 1.21542 0.94617 1.00553 0.97428 0.91991 0.91060 0.91551 0.92799 0.86799 0.88206 0.90323 0.91813 0.89770 0.92532 0.91133 0.91129 0.89573 0.88930 0.89436 0.89924 0.92166 0.97328 0.94848 0.93643 0.94193 0.96757 0.91788 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.31 71.98 0.67 -2.46 16 2 C 0.11 2.30 2.41 30.62 0.07 2.38 16 3 H 0.06 1.34 7.79 -2.39 -0.02 1.32 16 4 O -0.39 -7.77 10.41 -148.98 -1.55 -9.32 16 5 C 0.05 0.65 6.84 72.01 0.49 1.15 16 6 C -0.15 -1.65 6.14 30.68 0.19 -1.46 16 7 C -0.11 -1.63 5.29 30.71 0.16 -1.47 16 8 C -0.13 -2.50 1.74 -11.45 -0.02 -2.52 16 9 H 0.11 1.94 6.77 -2.39 -0.02 1.93 16 10 C 0.54 13.40 6.24 87.66 0.55 13.95 16 11 O -0.58 -18.45 15.38 -3.04 -0.05 -18.50 16 12 N -0.61 -14.24 3.32 -812.52 -2.70 -16.94 16 13 C 0.11 2.82 6.49 86.76 0.56 3.38 16 14 C -0.12 -3.03 4.92 31.56 0.16 -2.87 16 15 C -0.05 -1.43 0.55 -51.92 -0.03 -1.46 16 16 C 0.11 2.36 5.54 86.56 0.48 2.84 16 17 C -0.11 -3.30 4.84 30.41 0.15 -3.15 16 18 C 0.16 7.07 4.60 86.41 0.40 7.46 16 19 N -0.61 -29.46 2.69 -699.41 -1.88 -31.34 16 20 C -0.36 -19.82 9.36 84.03 0.79 -19.04 16 21 H 0.04 2.14 7.93 -2.91 -0.02 2.12 16 22 C -0.07 -3.63 4.68 84.86 0.40 -3.23 16 23 N -0.94 -55.92 12.80 21.65 0.28 -55.64 16 24 Si 1.11 49.89 29.98 68.60 2.06 51.95 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 28 C 0.14 5.87 6.18 86.25 0.53 6.41 16 29 C -0.10 -3.20 4.84 30.26 0.15 -3.06 16 30 H 0.06 1.53 6.61 -2.38 -0.02 1.51 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.12 6.19 -2.38 -0.01 2.11 16 42 H 0.09 2.05 7.98 -2.39 -0.02 2.04 16 43 H 0.09 1.56 7.99 -2.39 -0.02 1.54 16 44 H 0.09 1.65 6.83 -2.39 -0.02 1.63 16 45 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.01 0.39 7.41 -2.39 -0.02 0.37 16 48 H 0.03 1.65 6.97 -2.39 -0.02 1.64 16 49 H 0.25 15.47 7.13 -92.71 -0.66 14.81 16 50 H 0.04 1.70 7.93 -2.39 -0.02 1.68 16 51 H 0.01 0.60 6.56 -2.39 -0.02 0.58 16 52 H 0.06 1.86 7.82 -2.38 -0.02 1.84 16 53 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -68.18 393.54 2.83 -65.35 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.98 Total: 17.60 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.69 Total: -3.16 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -4.30 Total: -103.92 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.60 Total: -27.82 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.06 Total: 51.95 kcal Total: -68.18 2.83 -65.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040678014.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.614 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds