Wall clock time and date at job start Tue Mar 31 2020 20:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.99447 * 2 1 4 4 O 1.43746 * 109.87948 * 238.91589 * 2 1 3 5 5 C 1.44375 * 106.97661 * 214.06372 * 4 2 1 6 6 C 1.54995 * 103.49239 * 40.06399 * 5 4 2 7 7 C 1.54099 * 109.87673 * 121.08760 * 2 1 3 8 8 C 1.53005 * 110.60206 * 2.72210 * 7 2 1 9 9 C 1.50700 * 110.48841 * 240.12922 * 7 2 1 10 10 O 1.21277 * 119.99879 * 8.46030 * 9 7 2 11 11 N 1.34780 * 120.00208 * 188.46492 * 9 7 2 12 12 C 1.47480 * 125.66501 * 174.88856 * 11 9 7 13 13 C 1.55009 * 104.99368 * 204.07010 * 12 11 9 14 14 C 1.54535 * 101.52719 * 323.55454 * 13 12 11 15 15 C 1.47446 * 125.79830 * 354.91448 * 11 9 7 16 16 C 1.52270 * 110.16389 * 276.40974 * 14 13 12 17 17 C 1.53319 * 109.41850 * 297.16309 * 16 14 13 18 18 N 1.46928 * 108.70551 * 306.49526 * 17 16 14 19 19 C 1.36942 * 120.55739 * 234.20365 * 18 17 16 20 20 H 1.07995 * 119.99890 * 31.14853 * 19 18 17 21 21 C 1.38806 * 119.99760 * 211.13763 * 19 18 17 22 22 N 1.31623 * 120.00323 * 10.18678 * 21 19 18 23 23 Si 1.86808 * 119.99993 * 190.18553 * 21 19 18 24 24 H 1.48501 * 109.46602 * 60.00278 * 23 21 19 25 25 H 1.48502 * 109.46827 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46745 * 300.00433 * 23 21 19 27 27 C 1.46932 * 118.87676 * 54.22833 * 18 17 16 28 28 C 1.52278 * 110.15798 * 153.28415 * 14 13 12 29 29 H 1.08997 * 109.47287 * 298.91729 * 1 2 3 30 30 H 1.09000 * 109.47039 * 58.91083 * 1 2 3 31 31 H 1.08994 * 109.47613 * 178.91357 * 1 2 3 32 32 H 1.09001 * 110.61985 * 281.55825 * 5 4 2 33 33 H 1.08998 * 110.61634 * 158.56145 * 5 4 2 34 34 H 1.09000 * 110.90869 * 204.77856 * 6 5 4 35 35 H 1.09003 * 110.93858 * 81.18010 * 6 5 4 36 36 H 1.08998 * 109.46767 * 300.81514 * 8 7 2 37 37 H 1.08996 * 109.47068 * 60.82053 * 8 7 2 38 38 H 1.08997 * 109.47115 * 180.81879 * 8 7 2 39 39 H 1.08999 * 110.35228 * 85.15357 * 12 11 9 40 40 H 1.09004 * 110.35406 * 322.98262 * 12 11 9 41 41 H 1.08995 * 111.01876 * 81.62031 * 13 12 11 42 42 H 1.09010 * 111.01332 * 205.49763 * 13 12 11 43 43 H 1.08995 * 109.88352 * 59.09311 * 15 11 9 44 44 H 1.08999 * 110.05506 * 297.93037 * 15 11 9 45 45 H 1.08998 * 109.48192 * 57.14901 * 16 14 13 46 46 H 1.08998 * 109.47947 * 177.18547 * 16 14 13 47 47 H 1.09002 * 109.60150 * 186.72451 * 17 16 14 48 48 H 1.08996 * 109.59307 * 66.25858 * 17 16 14 49 49 H 0.96995 * 120.00304 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.59593 * 185.99277 * 27 18 17 51 51 H 1.08998 * 109.59563 * 65.52833 * 27 18 17 52 52 H 1.08996 * 109.47923 * 182.81289 * 28 14 13 53 53 H 1.09007 * 109.47780 * 302.84256 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2378 -1.3642 -0.7648 6 6 2.9195 -1.8916 0.6575 7 6 2.0539 -0.7483 1.2411 8 6 0.8916 -1.3191 2.0561 9 6 2.8944 0.1673 2.0932 10 8 2.9461 1.3525 1.8412 11 7 3.5889 -0.3309 3.1354 12 6 4.5292 0.4260 3.9827 13 6 5.4843 -0.6418 4.5747 14 6 4.5205 -1.8293 4.7962 15 6 3.5373 -1.7225 3.6199 16 6 3.7902 -1.6722 6.1231 17 6 4.8061 -1.7048 7.2710 18 7 5.6189 -2.9224 7.1464 19 6 5.7290 -3.7963 8.1950 20 1 4.9093 -3.9139 8.8882 21 6 6.8941 -4.5310 8.3667 22 7 7.9620 -4.2482 7.6512 23 14 6.9465 -5.9211 9.6135 24 1 5.9275 -6.9418 9.2598 25 1 8.2949 -6.5432 9.6048 26 1 6.6588 -5.3829 10.9673 27 6 6.3120 -3.1862 5.8780 28 6 5.2863 -3.1443 4.7394 29 1 -0.3634 0.4969 0.8995 30 1 -0.3633 0.5307 -0.8801 31 1 -0.3634 -1.0274 -0.0195 32 1 4.0685 -0.6589 -0.7356 33 1 3.4583 -2.1908 -1.4402 34 1 3.8331 -2.0226 1.2373 35 1 2.3540 -2.8222 0.6103 36 1 0.2347 -0.5078 2.3695 37 1 0.3306 -2.0250 1.4437 38 1 1.2816 -1.8312 2.9357 39 1 3.9920 0.9385 4.7808 40 1 5.0882 1.1432 3.3816 41 1 6.2684 -0.9020 3.8638 42 1 5.9114 -0.3037 5.5189 43 1 3.8363 -2.4037 2.8232 44 1 2.5290 -1.9642 3.9559 45 1 3.2586 -0.7207 6.1350 46 1 3.0780 -2.4883 6.2448 47 1 4.2794 -1.7128 8.2253 48 1 5.4505 -0.8276 7.2138 49 1 8.7762 -4.7614 7.7714 50 1 6.7783 -4.1708 5.9141 51 1 7.0737 -2.4244 5.7123 52 1 4.5896 -3.9756 4.8469 53 1 5.8021 -3.2235 3.7823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040786567.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:11 Heat of formation + Delta-G solvation = -69.654905 kcal Electronic energy + Delta-G solvation = -31724.743333 eV Core-core repulsion = 27789.216662 eV Total energy + Delta-G solvation = -3935.526670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.27203 -40.79109 -39.21944 -37.38230 -35.25588 -34.57958 -32.82031 -32.43007 -31.53630 -30.64401 -28.60973 -28.52137 -26.69803 -25.75326 -24.53363 -23.83328 -23.36347 -22.55852 -21.66478 -20.03847 -19.58539 -18.38114 -18.00735 -17.38965 -17.16375 -16.80529 -16.73594 -16.28461 -15.80728 -15.62061 -15.36652 -15.22262 -15.03931 -14.83512 -14.67617 -14.37029 -14.19388 -13.93015 -13.60834 -13.57799 -13.49245 -13.14562 -13.08482 -12.89713 -12.68194 -12.53996 -12.47466 -12.35301 -12.31966 -12.16206 -11.94868 -11.89973 -11.86398 -11.77986 -11.72494 -11.32866 -11.17307 -11.01609 -10.82681 -10.58995 -10.46892 -9.70137 -8.55260 -7.82277 -5.32368 1.46913 1.49593 1.50139 1.56945 1.85729 2.53528 2.79897 3.28584 3.31585 3.35803 3.53959 3.64656 3.69911 3.77693 3.83191 3.93237 4.09730 4.20033 4.22830 4.27403 4.34919 4.38489 4.49313 4.53597 4.57932 4.60693 4.66364 4.71126 4.73568 4.77842 4.81762 4.84028 4.86409 4.94951 4.96689 5.02259 5.05006 5.08409 5.12868 5.15130 5.23830 5.27106 5.31822 5.39241 5.41662 5.46961 5.60739 5.70267 5.86823 5.88983 6.44349 6.46709 7.00477 7.21969 7.92963 8.43591 9.22188 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023931 B = 0.002766 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.755988 B =10122.240702 C =10324.331329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.060 0.940 4 O -0.387 6.387 5 C 0.041 3.959 6 C -0.145 4.145 7 C -0.103 4.103 8 C -0.143 4.143 9 C 0.538 3.462 10 O -0.583 6.583 11 N -0.607 5.607 12 C 0.110 3.890 13 C -0.117 4.117 14 C -0.052 4.052 15 C 0.105 3.895 16 C -0.106 4.106 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.279 1.279 27 C 0.180 3.820 28 C -0.113 4.113 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.017 0.983 49 H 0.249 0.751 50 H 0.053 0.947 51 H -0.002 1.002 52 H 0.058 0.942 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 4.030 -14.284 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.023 3.977 3 H 0.078 0.922 4 O -0.307 6.307 5 C -0.035 4.035 6 C -0.183 4.183 7 C -0.106 4.106 8 C -0.199 4.199 9 C 0.327 3.673 10 O -0.463 6.463 11 N -0.339 5.339 12 C -0.012 4.012 13 C -0.155 4.155 14 C -0.053 4.053 15 C -0.016 4.016 16 C -0.145 4.145 17 C 0.016 3.984 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.222 1.222 26 H -0.205 1.205 27 C 0.055 3.945 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.035 0.965 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.016 0.984 52 H 0.077 0.923 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.573 4.610 -14.654 20.499 hybrid contribution 1.005 -0.371 1.162 1.580 sum -12.568 4.239 -13.492 18.920 Atomic orbital electron populations 1.22000 0.91644 1.03800 1.02758 1.22754 0.96652 0.95330 0.82930 0.92170 1.88855 1.40218 1.68007 1.33592 1.23683 0.86967 0.96737 0.96144 1.23493 1.00720 0.98118 0.95926 1.22055 0.97113 0.95620 0.95845 1.22125 0.95671 1.01907 1.00231 1.20416 0.79142 0.88018 0.79692 1.90657 1.65834 1.18255 1.71571 1.48589 1.42979 1.12409 1.29905 1.22242 0.90641 0.94732 0.93582 1.22775 0.96929 0.94503 1.01270 1.20873 0.94705 0.95395 0.94302 1.22623 1.00609 0.81908 0.96494 1.21769 0.97519 1.01428 0.93818 1.21087 0.92300 0.88192 0.96803 1.44251 1.56711 1.21604 1.10669 1.19452 0.97120 1.16756 1.05743 0.91938 1.25831 0.94744 1.03105 1.00631 1.70113 1.01678 1.42089 1.44237 0.85398 0.76293 0.79663 0.79392 1.20236 1.22245 1.20498 1.20591 0.91418 0.99039 0.83489 1.21909 0.98512 0.95873 0.98904 0.90392 0.92017 0.90074 0.93487 0.86338 0.89046 0.86799 0.91458 0.88714 0.90638 0.91154 0.91455 0.90874 0.90417 0.89075 0.89134 0.91004 0.91853 0.93361 0.96538 0.94225 0.92884 0.98404 0.92308 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.40 71.98 0.60 -1.75 16 2 C 0.08 1.76 3.66 30.96 0.11 1.87 16 3 H 0.06 1.67 6.48 -2.39 -0.02 1.65 16 4 O -0.39 -8.73 11.19 -148.98 -1.67 -10.40 16 5 C 0.04 0.73 7.72 72.66 0.56 1.29 16 6 C -0.15 -2.27 5.43 31.90 0.17 -2.10 16 7 C -0.10 -1.96 0.62 -51.93 -0.03 -1.99 16 8 C -0.14 -2.00 7.17 71.98 0.52 -1.48 16 9 C 0.54 13.75 6.59 87.66 0.58 14.32 16 10 O -0.58 -19.46 15.60 -3.02 -0.05 -19.50 16 11 N -0.61 -14.18 3.22 -811.63 -2.61 -16.80 16 12 C 0.11 2.75 6.56 86.88 0.57 3.32 16 13 C -0.12 -3.12 4.92 31.80 0.16 -2.96 16 14 C -0.05 -1.37 0.55 -51.91 -0.03 -1.40 16 15 C 0.11 2.13 4.67 86.43 0.40 2.54 16 16 C -0.11 -3.04 4.74 30.46 0.14 -2.89 16 17 C 0.14 5.35 6.19 86.40 0.53 5.88 16 18 N -0.61 -28.44 2.98 -698.62 -2.08 -30.52 16 19 C -0.26 -13.68 9.58 84.03 0.81 -12.88 16 20 H 0.06 3.22 7.85 -2.91 -0.02 3.19 16 21 C -0.05 -2.57 5.06 84.86 0.43 -2.14 16 22 N -0.93 -53.40 10.98 21.65 0.24 -53.17 16 23 Si 0.96 43.50 29.57 68.60 2.03 45.53 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.18 7.93 4.98 86.40 0.43 8.36 16 28 C -0.11 -3.55 4.72 30.46 0.14 -3.41 16 29 H 0.08 1.15 6.82 -2.39 -0.02 1.14 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.06 6.75 -2.39 -0.02 1.04 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.46 5.27 -2.39 -0.01 1.45 16 35 H 0.11 1.29 7.84 -2.39 -0.02 1.28 16 36 H 0.07 0.96 6.68 -2.39 -0.02 0.95 16 37 H 0.09 0.98 6.85 -2.39 -0.02 0.96 16 38 H 0.07 1.00 4.91 -2.39 -0.01 0.99 16 39 H 0.07 1.73 7.74 -2.39 -0.02 1.71 16 40 H 0.07 1.77 8.09 -2.38 -0.02 1.75 16 41 H 0.07 1.96 8.01 -2.39 -0.02 1.94 16 42 H 0.08 2.35 6.08 -2.38 -0.01 2.33 16 43 H 0.09 1.61 5.10 -2.39 -0.01 1.59 16 44 H 0.09 1.60 5.49 -2.39 -0.01 1.59 16 45 H 0.07 1.78 7.47 -2.39 -0.02 1.77 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 48 H 0.02 0.64 6.47 -2.39 -0.02 0.63 16 49 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 50 H 0.05 2.74 6.02 -2.39 -0.01 2.72 16 51 H 0.00 -0.10 7.55 -2.39 -0.02 -0.12 16 52 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.07 1.93 8.11 -2.38 -0.02 1.92 16 Total: -1.00 -66.37 378.94 2.87 -63.50 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.91 Total: 16.75 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.10 Total: 4.60 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.45 Total: -100.48 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.71 Total: -29.91 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.37 2.87 -63.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040786567.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds