Wall clock time and date at job start Tue Mar 31 2020 20:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.42411 * 2 1 4 4 O 1.44425 * 110.37300 * 122.31499 * 2 1 3 5 5 C 1.44427 * 105.27625 * 159.34150 * 4 2 1 6 6 C 1.54477 * 104.80248 * 319.48382 * 5 4 2 7 7 C 1.54482 * 110.37060 * 237.69143 * 2 1 3 8 8 C 1.53003 * 110.63124 * 335.89318 * 7 2 1 9 9 C 1.50708 * 110.51156 * 98.54608 * 7 2 1 10 10 O 1.21282 * 119.99770 * 356.09785 * 9 7 2 11 11 N 1.34776 * 119.99656 * 176.09659 * 9 7 2 12 12 C 1.47479 * 125.66544 * 0.02562 * 11 9 7 13 13 C 1.55025 * 104.89972 * 203.99943 * 12 11 9 14 14 C 1.54519 * 101.53508 * 323.61996 * 13 12 11 15 15 C 1.47178 * 125.65732 * 180.02562 * 11 9 7 16 16 C 1.52268 * 110.20121 * 276.40869 * 14 13 12 17 17 C 1.53317 * 109.41815 * 177.81166 * 16 14 13 18 18 N 1.46927 * 108.70709 * 53.50965 * 17 16 14 19 19 C 1.36943 * 120.56472 * 125.74550 * 18 17 16 20 20 H 1.08001 * 119.99585 * 332.19412 * 19 18 17 21 21 C 1.38811 * 119.99966 * 152.19398 * 19 18 17 22 22 N 1.31617 * 120.00162 * 342.68424 * 21 19 18 23 23 Si 1.86799 * 119.99877 * 162.68259 * 21 19 18 24 24 H 1.48493 * 109.47240 * 179.97438 * 23 21 19 25 25 H 1.48504 * 109.46983 * 300.00294 * 23 21 19 26 26 H 1.48509 * 109.47069 * 60.00067 * 23 21 19 27 27 C 1.46927 * 118.87372 * 306.01803 * 18 17 16 28 28 C 1.52277 * 110.20140 * 153.22312 * 14 13 12 29 29 H 1.09007 * 109.47443 * 182.30666 * 1 2 3 30 30 H 1.09000 * 109.47469 * 302.30827 * 1 2 3 31 31 H 1.09005 * 109.47000 * 62.30918 * 1 2 3 32 32 H 1.08997 * 110.37026 * 200.65544 * 5 4 2 33 33 H 1.08999 * 110.37161 * 78.31558 * 5 4 2 34 34 H 1.08994 * 110.51385 * 265.33486 * 6 5 4 35 35 H 1.09002 * 110.51085 * 142.61937 * 6 5 4 36 36 H 1.08996 * 109.47362 * 181.98553 * 8 7 2 37 37 H 1.09002 * 109.46746 * 301.98814 * 8 7 2 38 38 H 1.08999 * 109.47008 * 61.98251 * 8 7 2 39 39 H 1.08996 * 110.35606 * 322.85796 * 12 11 9 40 40 H 1.08995 * 110.35021 * 85.03987 * 12 11 9 41 41 H 1.09003 * 111.01382 * 205.56064 * 13 12 11 42 42 H 1.08999 * 111.01231 * 81.68511 * 13 12 11 43 43 H 1.09000 * 109.91522 * 59.13932 * 15 11 9 44 44 H 1.09006 * 110.06151 * 297.96714 * 15 11 9 45 45 H 1.09001 * 109.48489 * 57.83080 * 16 14 13 46 46 H 1.08997 * 109.48378 * 297.79450 * 16 14 13 47 47 H 1.08997 * 109.59641 * 293.73919 * 17 16 14 48 48 H 1.09001 * 109.72609 * 173.35278 * 17 16 14 49 49 H 0.96999 * 120.00142 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.60145 * 173.75310 * 27 18 17 51 51 H 1.09004 * 109.59783 * 294.21639 * 27 18 17 52 52 H 1.08999 * 109.47934 * 302.17348 * 28 14 13 53 53 H 1.08997 * 109.48249 * 62.21064 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7238 1.1442 5 6 3.3873 -1.0872 0.7994 6 6 3.3177 -1.5058 -0.6860 7 6 2.0677 -0.7740 -1.2240 8 6 1.0301 -1.7816 -1.7231 9 6 2.4481 0.1802 -2.3267 10 8 2.2445 1.3687 -2.1973 11 7 3.0147 -0.2874 -3.4567 12 6 3.3172 -1.7017 -3.7454 13 6 4.4578 -1.6592 -4.7946 14 6 4.0569 -0.4275 -5.6370 15 6 3.4343 0.5287 -4.6074 16 6 3.0321 -0.8226 -6.6916 17 6 2.6067 0.4214 -7.4803 18 7 3.8106 1.0854 -7.9983 19 6 3.9341 1.3601 -9.3343 20 1 3.4272 0.7431 -10.0614 21 6 4.7109 2.4313 -9.7537 22 7 5.0462 3.3752 -8.8999 23 14 5.2804 2.5332 -11.5298 24 1 6.0890 3.7640 -11.7205 25 1 6.1064 1.3424 -11.8539 26 1 4.0978 2.5745 -12.4272 27 6 4.8824 1.4443 -7.0596 28 6 5.2907 0.1987 -6.2730 29 1 -0.3634 -1.0269 0.0414 30 1 -0.3634 0.5492 0.8685 31 1 -0.3633 0.4776 -0.9100 32 1 3.7241 -1.9224 1.4135 33 1 4.0524 -0.2325 0.9220 34 1 3.1954 -2.5853 -0.7733 35 1 4.2108 -1.1773 -1.2176 36 1 1.4415 -2.3409 -2.5633 37 1 0.7759 -2.4706 -0.9175 38 1 0.1335 -1.2512 -2.0438 39 1 3.6524 -2.2099 -2.8414 40 1 2.4399 -2.2006 -4.1569 41 1 4.4632 -2.5637 -5.4028 42 1 5.4246 -1.5069 -4.3149 43 1 4.1726 1.2653 -4.2906 44 1 2.5713 1.0323 -5.0431 45 1 2.1603 -1.2603 -6.2053 46 1 3.4730 -1.5511 -7.3720 47 1 2.0667 1.1035 -6.8237 48 1 1.9645 0.1285 -8.3110 49 1 5.5887 4.1240 -9.1931 50 1 5.7415 1.8234 -7.6132 51 1 4.5235 2.2080 -6.3695 52 1 6.0004 0.4761 -5.4935 53 1 5.7553 -0.5190 -6.9490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040786678.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:20 Heat of formation + Delta-G solvation = -77.251215 kcal Electronic energy + Delta-G solvation = -31673.364592 eV Core-core repulsion = 27737.508521 eV Total energy + Delta-G solvation = -3935.856071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.22037 -40.82797 -39.20229 -37.46672 -35.27918 -34.42634 -32.92534 -32.42079 -31.70586 -30.53684 -28.99029 -28.05503 -26.85701 -25.95973 -24.53748 -23.85173 -23.18094 -22.32998 -22.03302 -19.91872 -19.74734 -18.46563 -17.86439 -17.50499 -17.00735 -16.83434 -16.65064 -16.44510 -15.77691 -15.56589 -15.48626 -15.24906 -15.06633 -14.87694 -14.65113 -14.39515 -13.91011 -13.82605 -13.62638 -13.46144 -13.32054 -13.20867 -13.14870 -13.02363 -12.91799 -12.65385 -12.54589 -12.47418 -12.45095 -12.21836 -12.00914 -11.95765 -11.86161 -11.79789 -11.67039 -11.44984 -11.07366 -11.00755 -10.90003 -10.64897 -10.51626 -9.70655 -8.67129 -7.87345 -5.33271 1.46159 1.48138 1.49997 1.55359 1.86860 2.50947 2.80389 3.25135 3.34139 3.43642 3.56174 3.61551 3.67210 3.72582 3.82001 3.91500 4.10708 4.19498 4.24215 4.27446 4.35149 4.39045 4.49421 4.52398 4.60923 4.61509 4.64512 4.67331 4.71650 4.76295 4.78947 4.84428 4.88322 4.93462 4.97978 4.99477 5.03472 5.05090 5.10220 5.12169 5.16047 5.26918 5.29387 5.33532 5.38908 5.41266 5.52948 5.64382 5.76898 5.79655 6.38486 6.49603 7.04531 7.14485 7.86537 8.38019 9.18502 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025901 B = 0.002734 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.794251 B =10239.900005 C =10409.236296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.053 0.947 4 O -0.380 6.380 5 C 0.039 3.961 6 C -0.140 4.140 7 C -0.099 4.099 8 C -0.139 4.139 9 C 0.531 3.469 10 O -0.592 6.592 11 N -0.607 5.607 12 C 0.091 3.909 13 C -0.116 4.116 14 C -0.052 4.052 15 C 0.125 3.875 16 C -0.103 4.103 17 C 0.137 3.863 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.069 0.931 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.297 1.297 25 H -0.274 1.274 26 H -0.276 1.276 27 C 0.177 3.823 28 C -0.112 4.112 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.000 1.000 48 H 0.053 0.947 49 H 0.249 0.751 50 H 0.051 0.949 51 H -0.016 1.016 52 H 0.063 0.937 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 -19.170 17.707 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.071 0.929 4 O -0.300 6.300 5 C -0.037 4.037 6 C -0.178 4.178 7 C -0.103 4.103 8 C -0.195 4.195 9 C 0.321 3.679 10 O -0.473 6.473 11 N -0.339 5.339 12 C -0.030 4.030 13 C -0.153 4.153 14 C -0.053 4.053 15 C 0.002 3.998 16 C -0.141 4.141 17 C 0.012 3.988 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.223 1.223 25 H -0.200 1.200 26 H -0.202 1.202 27 C 0.051 3.949 28 C -0.151 4.151 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.018 0.982 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.002 0.998 52 H 0.082 0.918 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.888 -18.433 17.996 26.053 hybrid contribution 0.516 1.730 -1.363 2.263 sum -3.371 -16.703 16.632 23.811 Atomic orbital electron populations 1.21836 0.91820 1.03913 1.02274 1.22822 0.96543 0.94514 0.83369 0.92948 1.89114 1.28103 1.74558 1.38186 1.23589 0.83822 1.00809 0.95498 1.23195 0.95736 1.02951 0.95915 1.22078 0.99219 0.95865 0.93099 1.22051 0.96974 0.97495 1.03022 1.20666 0.76209 0.88518 0.82550 1.90694 1.56588 1.19283 1.80695 1.48610 1.59677 1.10177 1.15419 1.22917 0.98958 0.80611 1.00514 1.22895 0.98337 0.97753 0.96346 1.20869 0.95404 0.95258 0.93734 1.21823 0.97945 0.93994 0.86035 1.21745 0.98284 0.97440 0.96674 1.21122 0.88658 0.93096 0.95927 1.44285 1.15424 1.69357 1.04061 1.19514 1.28280 1.07674 0.83786 0.91370 1.25832 1.02840 0.94735 1.01425 1.70210 1.41289 1.10747 1.36135 0.85333 0.78143 0.76672 0.80251 1.22335 1.20001 1.20206 1.20498 0.91578 0.92596 0.90205 1.21816 0.96240 0.98301 0.98772 0.89500 0.91777 0.91848 0.85870 0.93149 0.85984 0.90112 0.89758 0.88884 0.92305 0.87331 0.89070 0.87109 0.89889 0.94242 0.94006 0.90194 0.90840 0.98226 0.92836 0.94248 0.93043 0.99821 0.91829 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.38 71.98 0.60 -2.13 16 2 C 0.09 1.95 3.16 31.10 0.10 2.05 16 3 H 0.05 1.55 6.96 -2.39 -0.02 1.53 16 4 O -0.38 -8.02 11.34 -148.98 -1.69 -9.71 16 5 C 0.04 0.60 7.63 72.48 0.55 1.15 16 6 C -0.14 -1.87 4.52 31.61 0.14 -1.73 16 7 C -0.10 -1.91 0.60 -51.91 -0.03 -1.94 16 8 C -0.14 -1.87 6.94 71.98 0.50 -1.37 16 9 C 0.53 15.11 6.44 87.66 0.56 15.68 16 10 O -0.59 -23.14 15.81 -3.04 -0.05 -23.19 16 11 N -0.61 -15.55 3.29 -812.26 -2.67 -18.23 16 12 C 0.09 1.41 4.68 86.89 0.41 1.81 16 13 C -0.12 -2.05 5.99 31.80 0.19 -1.86 16 14 C -0.05 -1.48 0.53 -51.91 -0.03 -1.50 16 15 C 0.12 4.16 5.07 86.48 0.44 4.59 16 16 C -0.10 -3.04 4.78 30.46 0.15 -2.89 16 17 C 0.14 5.65 6.23 86.40 0.54 6.19 16 18 N -0.61 -30.54 2.99 -699.45 -2.09 -32.63 16 19 C -0.26 -14.47 9.57 84.03 0.80 -13.67 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 22 N -0.94 -56.88 11.20 21.65 0.24 -56.64 16 23 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.18 8.60 5.02 86.26 0.43 9.03 16 28 C -0.11 -3.94 4.69 30.31 0.14 -3.80 16 29 H 0.09 1.31 6.66 -2.38 -0.02 1.29 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.34 7.75 -2.38 -0.02 1.32 16 32 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.12 0.84 7.54 -2.39 -0.02 0.82 16 35 H 0.08 1.15 7.00 -2.39 -0.02 1.14 16 36 H 0.08 0.86 5.23 -2.39 -0.01 0.85 16 37 H 0.09 0.92 7.64 -2.39 -0.02 0.90 16 38 H 0.06 0.92 6.84 -2.39 -0.02 0.90 16 39 H 0.11 1.06 5.24 -2.39 -0.01 1.05 16 40 H 0.09 1.13 6.73 -2.39 -0.02 1.11 16 41 H 0.11 1.48 8.01 -2.39 -0.02 1.46 16 42 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 43 H 0.04 1.52 7.59 -2.39 -0.02 1.50 16 44 H 0.04 1.66 6.07 -2.38 -0.01 1.65 16 45 H 0.08 1.93 7.49 -2.39 -0.02 1.91 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.00 0.00 6.53 -2.39 -0.02 -0.02 16 48 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 49 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 50 H 0.05 2.85 6.02 -2.39 -0.01 2.84 16 51 H -0.02 -0.88 7.47 -2.39 -0.02 -0.90 16 52 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 53 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -75.51 382.40 2.58 -72.93 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.89 Total: 13.29 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.92 Total: 7.01 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.52 Total: -107.50 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -1.74 Total: -32.90 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.51 2.58 -72.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040786678.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.322 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds