Wall clock time and date at job start Tue Mar 31 2020 20:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.27015 * 2 1 4 4 C 1.54942 * 110.39247 * 237.85302 * 2 1 3 5 5 C 1.55310 * 100.93987 * 204.59728 * 4 2 1 6 6 C 1.54381 * 102.25105 * 34.13330 * 5 4 2 7 7 H 1.08996 * 109.90782 * 98.20092 * 6 5 4 8 8 C 1.53005 * 109.82865 * 219.13343 * 6 5 4 9 9 C 1.50703 * 109.47062 * 184.58589 * 8 6 5 10 10 O 1.21284 * 119.99898 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00050 * 179.97438 * 9 8 6 12 12 C 1.47482 * 125.66140 * 0.02562 * 11 9 8 13 13 C 1.55024 * 104.90050 * 203.99784 * 12 11 9 14 14 C 1.54813 * 101.63365 * 323.72221 * 13 12 11 15 15 C 1.47174 * 125.66130 * 180.02562 * 11 9 8 16 16 C 1.52275 * 110.36937 * 153.03411 * 14 13 12 17 17 C 1.53318 * 109.41671 * 182.27342 * 16 14 13 18 18 N 1.46924 * 108.70566 * 306.48066 * 17 16 14 19 19 C 1.36941 * 120.56058 * 234.26142 * 18 17 16 20 20 H 1.08002 * 119.99889 * 152.43184 * 19 18 17 21 21 C 1.38803 * 120.00177 * 332.42995 * 19 18 17 22 22 N 1.31620 * 119.99748 * 159.35126 * 21 19 18 23 23 Si 1.86802 * 120.00142 * 339.35314 * 21 19 18 24 24 H 1.48499 * 109.47016 * 93.18902 * 23 21 19 25 25 H 1.48504 * 109.46852 * 213.18722 * 23 21 19 26 26 H 1.48500 * 109.46992 * 333.18785 * 23 21 19 27 27 C 1.46928 * 118.87031 * 54.24067 * 18 17 16 28 28 C 1.52279 * 110.17568 * 276.30661 * 14 13 12 29 29 O 1.43236 * 107.59003 * 338.63904 * 6 5 4 30 30 H 1.08993 * 109.47299 * 299.36520 * 1 2 3 31 31 H 1.09010 * 109.46765 * 59.36808 * 1 2 3 32 32 H 1.09000 * 109.47194 * 179.35956 * 1 2 3 33 33 H 1.09004 * 111.12696 * 322.51101 * 4 2 1 34 34 H 1.09004 * 111.13008 * 86.68011 * 4 2 1 35 35 H 1.09007 * 110.84615 * 275.94370 * 5 4 2 36 36 H 1.08994 * 110.85142 * 152.31964 * 5 4 2 37 37 H 1.08997 * 109.47327 * 64.58577 * 8 6 5 38 38 H 1.08999 * 109.47113 * 304.58602 * 8 6 5 39 39 H 1.09005 * 110.35272 * 322.84929 * 12 11 9 40 40 H 1.09004 * 110.35369 * 85.03166 * 12 11 9 41 41 H 1.08996 * 111.01609 * 81.68648 * 13 12 11 42 42 H 1.09000 * 111.01157 * 205.55647 * 13 12 11 43 43 H 1.08999 * 109.91123 * 297.87965 * 15 11 9 44 44 H 1.09002 * 109.91041 * 58.95983 * 15 11 9 45 45 H 1.09007 * 109.47777 * 302.25089 * 16 14 13 46 46 H 1.08997 * 109.48453 * 62.28672 * 16 14 13 47 47 H 1.09004 * 109.59704 * 186.71498 * 17 16 14 48 48 H 1.09000 * 109.72613 * 66.32779 * 17 16 14 49 49 H 0.97001 * 119.99824 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.59922 * 185.99565 * 27 18 17 51 51 H 1.08998 * 109.73442 * 65.60256 * 27 18 17 52 52 H 1.09003 * 109.47862 * 297.59810 * 28 14 13 53 53 H 1.09002 * 109.47805 * 57.61258 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4722 -1.2001 -0.7168 6 6 3.2125 -1.4393 0.7861 7 1 3.0656 -2.5031 0.9726 8 6 4.3990 -0.9278 1.6057 9 6 4.1885 -1.2660 3.0592 10 8 3.1883 -1.8583 3.4053 11 7 5.1122 -0.9112 3.9742 12 6 6.3687 -0.1918 3.6933 13 6 7.3121 -0.5646 4.8655 14 6 6.3225 -0.6292 6.0543 15 6 5.0345 -1.1774 5.4196 16 6 6.8405 -1.5811 7.1241 17 6 5.8186 -1.6721 8.2634 18 7 5.5133 -0.3136 8.7323 19 6 5.6460 0.0125 10.0556 20 1 5.8618 1.0313 10.3417 21 6 5.5030 -0.9663 11.0293 22 7 6.0118 -0.7805 12.2289 23 14 4.5885 -2.5473 10.6373 24 1 5.5561 -3.5808 10.1894 25 1 3.8816 -3.0246 11.8529 26 1 3.6007 -2.2931 9.5579 27 6 5.0638 0.6892 7.7570 28 6 6.0906 0.7650 6.6210 29 8 2.0286 -0.7156 1.1414 30 1 -0.3633 0.5039 0.8955 31 1 -0.3633 0.5237 -0.8844 32 1 -0.3633 -1.0276 -0.0115 33 1 1.4506 -1.6422 -1.4502 34 1 2.1517 -0.1202 -2.0990 35 1 4.1988 -0.4006 -0.8625 36 1 3.8006 -2.1178 -1.2045 37 1 4.4799 0.1532 1.4922 38 1 5.3155 -1.3999 1.2519 39 1 6.7921 -0.5243 2.7455 40 1 6.1933 0.8838 3.6729 41 1 7.7807 -1.5342 4.6970 42 1 8.0638 0.2088 5.0234 43 1 4.1674 -0.6715 5.8441 44 1 4.9612 -2.2505 5.5960 45 1 6.9895 -2.5697 6.6896 46 1 7.7877 -1.2088 7.5142 47 1 6.2362 -2.2567 9.0832 48 1 4.9067 -2.1480 7.9026 49 1 5.9122 -1.4647 12.9093 50 1 4.9838 1.6617 8.2429 51 1 4.0931 0.4011 7.3537 52 1 7.0300 1.1618 7.0060 53 1 5.7150 1.4193 5.8343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040829276.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:24 Heat of formation + Delta-G solvation = -85.021439 kcal Electronic energy + Delta-G solvation = -30696.883746 eV Core-core repulsion = 26760.690733 eV Total energy + Delta-G solvation = -3936.193013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.67255 -40.69432 -39.52210 -37.54491 -34.81110 -33.80979 -33.19978 -33.06672 -32.06562 -30.68663 -30.36659 -28.11193 -26.39385 -25.17173 -24.65169 -23.74559 -22.47079 -22.37417 -21.83173 -20.11369 -19.84883 -18.59683 -18.03894 -17.93919 -17.23326 -17.12964 -16.65023 -16.38872 -16.00024 -15.48394 -15.35506 -15.25686 -15.10333 -14.83396 -14.47487 -14.29979 -14.21069 -14.13023 -13.82459 -13.51448 -13.46238 -13.43972 -13.16116 -12.93477 -12.81007 -12.70038 -12.54764 -12.50891 -12.38960 -12.19224 -12.08623 -12.00703 -11.72457 -11.66580 -11.63861 -11.57075 -11.17794 -11.13085 -10.80772 -10.65999 -10.44556 -9.63001 -8.93510 -8.20033 -5.50002 1.22833 1.35997 1.44477 1.69148 2.01694 2.36566 2.88525 3.03605 3.30943 3.40532 3.57945 3.62875 3.72211 3.75664 3.86284 3.89185 4.10956 4.18095 4.23154 4.24828 4.34707 4.40253 4.43123 4.47341 4.50323 4.55314 4.60080 4.61707 4.67604 4.68847 4.75104 4.79684 4.82940 4.88045 4.92681 4.92864 5.00423 5.07211 5.09746 5.11705 5.12738 5.21390 5.25087 5.25948 5.33910 5.34435 5.38598 5.51095 5.85405 6.10481 6.27679 6.60235 6.89752 7.22742 7.60292 8.01790 8.99995 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.002636 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.953805 B =10618.928233 C =11188.997187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.140 4.140 6 C 0.087 3.913 7 H 0.059 0.941 8 C -0.134 4.134 9 C 0.515 3.485 10 O -0.589 6.589 11 N -0.620 5.620 12 C 0.099 3.901 13 C -0.114 4.114 14 C -0.055 4.055 15 C 0.119 3.881 16 C -0.108 4.108 17 C 0.119 3.881 18 N -0.618 5.618 19 C -0.243 4.243 20 H 0.058 0.942 21 C -0.030 4.030 22 N -0.953 5.953 23 Si 0.937 3.063 24 H -0.273 1.273 25 H -0.310 1.310 26 H -0.275 1.275 27 C 0.139 3.861 28 C -0.105 4.105 29 O -0.399 6.399 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.016 0.984 49 H 0.262 0.738 50 H 0.056 0.944 51 H 0.017 0.983 52 H 0.071 0.929 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 2.210 -34.592 34.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.001 3.999 3 H 0.093 0.907 4 C -0.183 4.183 5 C -0.178 4.178 6 C 0.029 3.971 7 H 0.077 0.923 8 C -0.174 4.174 9 C 0.306 3.694 10 O -0.469 6.469 11 N -0.354 5.354 12 C -0.022 4.022 13 C -0.152 4.152 14 C -0.056 4.056 15 C -0.004 4.004 16 C -0.148 4.148 17 C -0.006 4.006 18 N -0.342 5.342 19 C -0.373 4.373 20 H 0.076 0.924 21 C -0.225 4.225 22 N -0.600 5.600 23 Si 0.768 3.232 24 H -0.200 1.200 25 H -0.239 1.239 26 H -0.201 1.201 27 C 0.014 3.986 28 C -0.144 4.144 29 O -0.320 6.320 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.035 0.965 52 H 0.090 0.910 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.932 1.844 -34.134 34.197 hybrid contribution -0.974 -0.998 1.215 1.850 sum -0.042 0.846 -32.919 32.930 Atomic orbital electron populations 1.21897 0.93961 1.02308 1.02652 1.23230 0.95149 0.96044 0.85461 0.90682 1.23313 0.95968 1.00914 0.98092 1.23186 0.98338 1.04348 0.91878 1.22567 0.84281 0.95462 0.94788 0.92297 1.22169 1.01298 1.05163 0.88735 1.21159 0.81209 0.77941 0.89100 1.90718 1.30104 1.43624 1.82444 1.48783 1.22244 1.57532 1.06801 1.22664 0.82116 0.97276 1.00191 1.22910 0.96691 1.04027 0.91583 1.20945 0.93966 0.95588 0.95107 1.21836 0.98372 0.99114 0.81057 1.21794 0.98749 0.99286 0.94925 1.21385 0.96190 0.86556 0.96476 1.44478 1.77515 1.08270 1.03968 1.18904 1.40497 0.95884 0.81966 0.92444 1.25792 1.00552 1.01084 0.95058 1.69938 1.47921 1.36597 1.05532 0.86055 0.79897 0.81526 0.75765 1.19960 1.23864 1.20059 1.21162 0.94984 0.92151 0.90270 1.21753 0.99985 0.95386 0.97246 1.88631 1.42900 1.65023 1.35408 0.93530 0.88904 0.92951 0.90705 0.87479 0.87936 0.88296 0.86602 0.84436 0.87114 0.89784 0.89615 0.87440 0.94084 0.93778 0.90520 0.90911 0.93320 0.96580 0.92941 0.92516 0.96529 0.90996 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.63 71.98 0.69 -1.71 16 2 C 0.06 0.96 4.07 31.26 0.13 1.08 16 3 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 4 C -0.15 -1.46 6.57 32.05 0.21 -1.25 16 5 C -0.14 -1.28 6.54 31.86 0.21 -1.07 16 6 C 0.09 1.63 3.04 31.06 0.09 1.73 16 7 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 8 C -0.13 -2.12 4.28 29.85 0.13 -1.99 16 9 C 0.52 14.24 7.75 87.66 0.68 14.92 16 10 O -0.59 -23.21 15.82 8.82 0.14 -23.07 16 11 N -0.62 -15.34 3.33 -812.25 -2.71 -18.05 16 12 C 0.10 1.42 6.38 86.88 0.55 1.97 16 13 C -0.11 -1.91 6.00 31.91 0.19 -1.72 16 14 C -0.06 -1.49 0.54 -51.81 -0.03 -1.52 16 15 C 0.12 3.75 5.06 86.48 0.44 4.19 16 16 C -0.11 -3.52 4.72 30.46 0.14 -3.38 16 17 C 0.12 5.22 3.93 86.41 0.34 5.56 16 18 N -0.62 -29.84 2.76 -698.61 -1.93 -31.76 16 19 C -0.24 -14.05 10.03 84.03 0.84 -13.21 16 20 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 21 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 22 N -0.95 -60.92 13.97 21.65 0.30 -60.62 16 23 Si 0.94 49.18 24.35 68.60 1.67 50.85 16 24 H -0.27 -13.45 6.63 99.48 0.66 -12.79 16 25 H -0.31 -16.42 7.11 99.48 0.71 -15.72 16 26 H -0.28 -14.48 6.64 99.48 0.66 -13.82 16 27 C 0.14 5.52 6.22 86.40 0.54 6.06 16 28 C -0.11 -3.05 4.78 30.46 0.15 -2.90 16 29 O -0.40 -10.24 10.05 -137.12 -1.38 -11.62 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.49 7.85 -2.38 -0.02 0.47 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.14 1.11 7.85 -2.39 -0.02 1.09 16 39 H 0.11 0.81 7.48 -2.38 -0.02 0.79 16 40 H 0.08 1.02 7.78 -2.38 -0.02 1.00 16 41 H 0.09 1.31 8.02 -2.39 -0.02 1.29 16 42 H 0.11 1.40 8.01 -2.39 -0.02 1.39 16 43 H 0.04 1.55 6.07 -2.39 -0.01 1.53 16 44 H 0.04 1.55 7.58 -2.39 -0.02 1.53 16 45 H 0.08 2.17 8.11 -2.38 -0.02 2.15 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 2.36 4.46 -2.38 -0.01 2.35 16 48 H 0.02 0.74 6.44 -2.39 -0.02 0.73 16 49 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 50 H 0.06 2.28 7.93 -2.38 -0.02 2.26 16 51 H 0.02 0.69 6.53 -2.39 -0.02 0.68 16 52 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.08 1.97 7.51 -2.39 -0.02 1.95 16 Total: -1.00 -83.09 392.69 2.63 -80.47 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.78 Total: 8.39 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.75 Total: 5.41 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -4.33 Total: -110.43 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.24 Total: -34.69 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.67 Total: 50.85 kcal Total: -83.09 2.63 -80.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040829276.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.555 kcal (2) G-P(sol) polarization free energy of solvation -83.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds