Wall clock time and date at job start Tue Mar 31 2020 20:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.41522 * 2 1 4 4 C 1.54478 * 110.37343 * 237.69045 * 2 1 3 5 5 C 1.54503 * 104.18202 * 217.25763 * 4 2 1 6 6 C 1.54483 * 104.06557 * 359.93194 * 5 4 2 7 7 H 1.09001 * 110.36820 * 265.14363 * 6 5 4 8 8 C 1.52995 * 110.37419 * 142.81216 * 6 5 4 9 9 C 1.50704 * 109.47456 * 175.00026 * 8 6 5 10 10 O 1.21281 * 119.99155 * 359.97438 * 9 8 6 11 11 N 1.34766 * 120.00248 * 179.97438 * 9 8 6 12 12 C 1.47491 * 125.66438 * 359.69314 * 11 9 8 13 13 C 1.55238 * 104.79401 * 155.92804 * 12 11 9 14 14 C 1.54513 * 101.44054 * 36.66422 * 13 12 11 15 15 C 1.47175 * 125.66419 * 179.97438 * 11 9 8 16 16 C 1.52277 * 110.20343 * 83.42082 * 14 13 12 17 17 C 1.53316 * 109.41670 * 182.20131 * 16 14 13 18 18 N 1.46931 * 108.70867 * 306.49401 * 17 16 14 19 19 C 1.36938 * 120.56014 * 234.21341 * 18 17 16 20 20 H 1.07998 * 120.00378 * 27.94807 * 19 18 17 21 21 C 1.38813 * 119.99597 * 207.94517 * 19 18 17 22 22 N 1.31617 * 120.00111 * 17.44964 * 21 19 18 23 23 Si 1.86807 * 119.99622 * 197.44537 * 21 19 18 24 24 H 1.48496 * 109.47157 * 60.00688 * 23 21 19 25 25 H 1.48506 * 109.46766 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47542 * 300.00217 * 23 21 19 27 27 C 1.46928 * 118.87268 * 54.23426 * 18 17 16 28 28 C 1.52267 * 110.21197 * 206.61351 * 14 13 12 29 29 O 1.44419 * 104.80190 * 23.97646 * 6 5 4 30 30 H 1.09004 * 109.46963 * 182.31479 * 1 2 3 31 31 H 1.09005 * 109.47244 * 302.30812 * 1 2 3 32 32 H 1.08998 * 109.47150 * 62.31055 * 1 2 3 33 33 H 1.08993 * 110.51308 * 98.54548 * 4 2 1 34 34 H 1.09007 * 110.50708 * 335.96836 * 4 2 1 35 35 H 1.09004 * 110.51435 * 118.57884 * 5 4 2 36 36 H 1.08997 * 110.51234 * 241.14605 * 5 4 2 37 37 H 1.09008 * 109.47161 * 295.00314 * 8 6 5 38 38 H 1.09005 * 109.47527 * 54.99677 * 8 6 5 39 39 H 1.08997 * 110.34783 * 274.87810 * 12 11 9 40 40 H 1.09006 * 110.34951 * 37.16103 * 12 11 9 41 41 H 1.09004 * 111.19975 * 278.57037 * 13 12 11 42 42 H 1.09005 * 110.94550 * 154.64726 * 13 12 11 43 43 H 1.09002 * 109.90546 * 300.83935 * 15 11 9 44 44 H 1.09000 * 109.90691 * 62.09629 * 15 11 9 45 45 H 1.09002 * 109.47849 * 302.18286 * 16 14 13 46 46 H 1.08997 * 109.47731 * 62.22119 * 16 14 13 47 47 H 1.09000 * 109.59649 * 186.72699 * 17 16 14 48 48 H 1.08999 * 109.60173 * 66.25906 * 17 16 14 49 49 H 0.97005 * 119.99711 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.59715 * 185.99033 * 27 18 17 51 51 H 1.09002 * 109.72859 * 65.60082 * 27 18 17 52 52 H 1.09004 * 109.47707 * 297.77124 * 28 14 13 53 53 H 1.09003 * 109.48547 * 57.80325 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3173 -1.5083 -0.6883 6 6 3.3900 -1.0908 0.7972 7 1 4.0570 -0.2374 0.9193 8 6 3.8620 -2.2645 1.6578 9 6 4.0435 -1.8029 3.0809 10 8 3.8180 -0.6488 3.3774 11 7 4.4564 -2.6727 4.0239 12 6 4.7591 -4.0994 3.8045 13 6 5.7378 -4.4775 4.9486 14 6 5.1747 -3.6441 6.1215 15 6 4.6745 -2.3579 5.4450 16 6 4.0220 -4.3842 6.7868 17 6 3.4418 -3.5185 7.9112 18 7 4.5328 -3.1236 8.8127 19 6 4.4501 -3.3726 10.1567 20 1 3.8666 -4.2072 10.5164 21 6 5.1162 -2.5523 11.0568 22 7 5.5337 -1.3628 10.6787 23 14 5.4201 -3.1368 12.8049 24 1 6.2367 -4.3767 12.7774 25 1 6.1455 -2.0836 13.5598 26 1 4.1203 -3.4147 13.4670 27 6 5.7138 -2.4566 8.2477 28 6 6.2793 -3.3294 7.1212 29 8 2.0368 -0.7250 1.1444 30 1 -0.3633 -1.0269 0.0415 31 1 -0.3634 0.5493 0.8686 32 1 -0.3633 0.4775 -0.9100 33 1 2.3430 -0.0840 -2.0215 34 1 1.3266 -1.4903 -1.5786 35 1 3.1929 -2.5877 -0.7761 36 1 4.2098 -1.1830 -1.2228 37 1 3.1181 -3.0606 1.6260 38 1 4.8110 -2.6385 1.2733 39 1 3.8482 -4.6945 3.8694 40 1 5.2370 -4.2408 2.8350 41 1 6.7581 -4.1771 4.7100 42 1 5.6878 -5.5442 5.1676 43 1 5.4243 -1.5725 5.5403 44 1 3.7382 -2.0381 5.9023 45 1 3.2467 -4.5883 6.0483 46 1 4.3851 -5.3242 7.2022 47 1 2.6979 -4.0902 8.4660 48 1 2.9790 -2.6281 7.4856 49 1 5.9989 -0.7894 11.3078 50 1 6.4677 -2.3282 9.0244 51 1 5.4305 -1.4827 7.8485 52 1 6.6657 -4.2584 7.5403 53 1 7.0846 -2.7952 6.6169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040829282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:33 Heat of formation + Delta-G solvation = -88.400176 kcal Electronic energy + Delta-G solvation = -30513.360373 eV Core-core repulsion = 26577.020846 eV Total energy + Delta-G solvation = -3936.339526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.62385 -40.59906 -39.46987 -37.38000 -34.78860 -33.81233 -33.13595 -32.79536 -31.69436 -30.50324 -30.34345 -28.06083 -26.47999 -25.10632 -24.28621 -23.73711 -22.51580 -22.22619 -21.71499 -20.23060 -19.73320 -18.53926 -18.01114 -17.48325 -17.15709 -16.86589 -16.70266 -16.40778 -15.76187 -15.61490 -15.51768 -15.18719 -14.87568 -14.65616 -14.59025 -14.33995 -13.97277 -13.83394 -13.70089 -13.30777 -13.25331 -13.14471 -12.99587 -12.89886 -12.77437 -12.71584 -12.54351 -12.52487 -12.45820 -12.10078 -12.01694 -11.96621 -11.87245 -11.72398 -11.47287 -11.44399 -11.07972 -11.02315 -10.80996 -10.66719 -10.51953 -9.63503 -8.67890 -7.87425 -5.33676 1.45764 1.48244 1.55399 1.67071 2.01473 2.50863 2.89946 3.25295 3.43729 3.63816 3.64110 3.67981 3.73096 3.82452 3.89641 4.03649 4.05136 4.24877 4.26078 4.29159 4.38251 4.43570 4.50648 4.54165 4.55345 4.59174 4.65953 4.70666 4.73899 4.76860 4.79704 4.86968 4.90452 4.97339 4.97684 5.04388 5.05552 5.12897 5.16873 5.17957 5.23469 5.26871 5.29674 5.34573 5.38474 5.43433 5.52517 5.63968 5.76894 6.03832 6.38166 6.60425 7.13893 7.20714 7.85706 8.37954 9.18528 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.002380 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.984888 B =11759.423809 C =12311.394863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.141 4.141 6 C 0.081 3.919 7 H 0.050 0.950 8 C -0.118 4.118 9 C 0.513 3.487 10 O -0.592 6.592 11 N -0.619 5.619 12 C 0.098 3.902 13 C -0.115 4.115 14 C -0.053 4.053 15 C 0.126 3.874 16 C -0.102 4.102 17 C 0.137 3.863 18 N -0.607 5.607 19 C -0.262 4.262 20 H 0.069 0.931 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.276 1.276 27 C 0.176 3.824 28 C -0.112 4.112 29 O -0.395 6.395 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.053 0.947 48 H -0.003 1.003 49 H 0.249 0.751 50 H 0.052 0.948 51 H -0.017 1.017 52 H 0.067 0.933 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -8.473 -28.646 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.004 4.004 3 H 0.074 0.926 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.023 3.977 7 H 0.068 0.932 8 C -0.157 4.157 9 C 0.304 3.696 10 O -0.473 6.473 11 N -0.353 5.353 12 C -0.023 4.023 13 C -0.152 4.152 14 C -0.054 4.054 15 C 0.002 3.998 16 C -0.141 4.141 17 C 0.012 3.988 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.202 1.202 27 C 0.051 3.949 28 C -0.151 4.151 29 O -0.315 6.315 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.015 0.985 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.001 0.999 52 H 0.086 0.914 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.290 -7.758 -28.263 29.398 hybrid contribution 0.111 1.040 1.749 2.038 sum -2.180 -6.718 -26.514 27.438 Atomic orbital electron populations 1.21796 0.92562 1.02889 1.02751 1.23223 0.96041 0.95422 0.85686 0.92574 1.22984 0.97832 1.00002 0.97336 1.22992 0.99409 1.02726 0.92749 1.22806 0.84472 0.95812 0.94584 0.93157 1.21835 1.05925 0.99394 0.88528 1.21197 0.75521 0.84424 0.88475 1.90713 1.52542 1.20850 1.83182 1.48804 1.66246 1.12140 1.08082 1.22740 0.99687 0.79060 1.00836 1.22910 0.98990 1.01233 0.92104 1.20880 0.95857 0.93601 0.95066 1.21765 0.98865 0.97807 0.81314 1.21740 0.97044 0.98383 0.96943 1.21121 0.90473 0.95401 0.91852 1.44308 1.16029 1.69513 1.03246 1.19522 1.29298 1.07341 0.83073 0.91339 1.25869 1.02513 0.94766 1.01844 1.70222 1.43589 1.08546 1.36172 0.85300 0.78035 0.77173 0.79697 1.19927 1.22285 1.20161 1.20595 0.89312 0.91227 0.93801 1.21885 0.96622 1.00461 0.96112 1.89255 1.27595 1.74770 1.39920 0.91754 0.93624 0.88864 0.89053 0.89376 0.88430 0.88632 0.86205 0.83828 0.89683 0.86884 0.89794 0.87276 0.94417 0.94732 0.90465 0.90756 0.92824 0.98503 0.94211 0.92917 0.99927 0.91393 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.52 71.98 0.69 -1.67 16 2 C 0.05 1.04 3.93 31.10 0.12 1.16 16 3 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.14 -1.70 6.62 31.61 0.21 -1.49 16 5 C -0.14 -1.60 6.63 31.61 0.21 -1.39 16 6 C 0.08 1.69 2.75 31.10 0.09 1.78 16 7 H 0.05 1.26 7.91 -2.39 -0.02 1.24 16 8 C -0.12 -2.11 4.33 29.85 0.13 -1.98 16 9 C 0.51 15.58 7.78 87.66 0.68 16.26 16 10 O -0.59 -25.09 15.94 3.23 0.05 -25.04 16 11 N -0.62 -17.26 3.33 -811.81 -2.70 -19.96 16 12 C 0.10 1.63 6.38 86.96 0.55 2.19 16 13 C -0.11 -2.20 6.00 31.88 0.19 -2.01 16 14 C -0.05 -1.62 0.53 -51.91 -0.03 -1.65 16 15 C 0.13 4.51 5.06 86.49 0.44 4.95 16 16 C -0.10 -3.25 4.78 30.46 0.15 -3.11 16 17 C 0.14 5.93 6.22 86.40 0.54 6.47 16 18 N -0.61 -31.56 2.98 -698.60 -2.08 -33.65 16 19 C -0.26 -14.80 9.58 84.03 0.80 -14.00 16 20 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 21 C -0.05 -3.17 4.90 84.86 0.42 -2.75 16 22 N -0.94 -58.07 11.19 21.65 0.24 -57.83 16 23 Si 0.97 45.91 29.59 68.60 2.03 47.94 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 C 0.18 8.86 5.05 86.40 0.44 9.30 16 28 C -0.11 -4.10 4.70 30.46 0.14 -3.96 16 29 O -0.40 -10.86 10.62 -142.72 -1.52 -12.37 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.84 7.87 -2.38 -0.02 0.82 16 35 H 0.10 0.73 7.87 -2.39 -0.02 0.72 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.14 1.39 7.86 -2.38 -0.02 1.37 16 39 H 0.09 1.22 7.74 -2.39 -0.02 1.20 16 40 H 0.11 1.02 7.48 -2.38 -0.02 1.01 16 41 H 0.08 1.51 8.01 -2.39 -0.02 1.50 16 42 H 0.11 1.61 8.01 -2.38 -0.02 1.60 16 43 H 0.04 1.54 7.59 -2.39 -0.02 1.52 16 44 H 0.03 1.49 6.07 -2.39 -0.01 1.48 16 45 H 0.08 2.07 7.47 -2.39 -0.02 2.05 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 48 H 0.00 -0.14 6.53 -2.39 -0.02 -0.15 16 49 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 50 H 0.05 2.99 6.02 -2.39 -0.01 2.98 16 51 H -0.02 -0.97 7.48 -2.39 -0.02 -0.99 16 52 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 53 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -82.07 399.16 2.65 -79.42 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.87 Total: 13.38 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.76 Total: 8.11 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.55 Total: -111.44 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.46 Total: -37.41 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -82.07 2.65 -79.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040829282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.975 kcal (2) G-P(sol) polarization free energy of solvation -82.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds