Wall clock time and date at job start Tue Mar 31 2020 20:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.90028 * 2 1 4 4 C 1.54381 * 109.83083 * 120.92582 * 2 1 3 5 5 C 1.55415 * 102.31070 * 140.80083 * 4 2 1 6 6 C 1.54953 * 100.89144 * 325.99346 * 5 4 2 7 7 H 1.08994 * 110.31253 * 277.35742 * 6 5 4 8 8 C 1.53000 * 110.30920 * 155.28527 * 6 5 4 9 9 C 1.50704 * 109.47381 * 176.39138 * 8 6 5 10 10 O 1.21287 * 119.99419 * 359.97438 * 9 8 6 11 11 N 1.34769 * 120.00229 * 179.97438 * 9 8 6 12 12 C 1.47482 * 125.66193 * 0.02691 * 11 9 8 13 13 C 1.55022 * 104.89998 * 203.99582 * 12 11 9 14 14 C 1.54517 * 101.53547 * 323.61771 * 13 12 11 15 15 C 1.47173 * 125.66225 * 179.97438 * 11 9 8 16 16 C 1.52273 * 110.20392 * 276.40798 * 14 13 12 17 17 C 1.53310 * 109.41818 * 177.81046 * 16 14 13 18 18 N 1.46927 * 108.71161 * 53.51081 * 17 16 14 19 19 C 1.36934 * 120.56498 * 125.74241 * 18 17 16 20 20 H 1.07999 * 120.00009 * 332.08493 * 19 18 17 21 21 C 1.38810 * 120.00118 * 152.09494 * 19 18 17 22 22 N 1.31623 * 120.00402 * 144.14475 * 21 19 18 23 23 Si 1.86808 * 119.99804 * 324.13993 * 21 19 18 24 24 H 1.48498 * 109.47178 * 270.00337 * 23 21 19 25 25 H 1.48501 * 109.46991 * 150.00018 * 23 21 19 26 26 H 1.48506 * 109.46737 * 30.00339 * 23 21 19 27 27 C 1.46933 * 118.86989 * 306.01557 * 18 17 16 28 28 C 1.52279 * 110.20468 * 153.22174 * 14 13 12 29 29 O 1.43236 * 109.83439 * 239.06638 * 2 1 3 30 30 H 1.08996 * 109.47274 * 179.47920 * 1 2 3 31 31 H 1.09000 * 109.47581 * 299.48370 * 1 2 3 32 32 H 1.09005 * 109.47274 * 59.48497 * 1 2 3 33 33 H 1.08994 * 110.85292 * 259.06222 * 4 2 1 34 34 H 1.08997 * 110.84568 * 22.48307 * 4 2 1 35 35 H 1.08994 * 111.21449 * 208.06994 * 5 4 2 36 36 H 1.08997 * 111.08786 * 83.86561 * 5 4 2 37 37 H 1.09000 * 109.47123 * 56.39443 * 8 6 5 38 38 H 1.09000 * 109.47164 * 296.39166 * 8 6 5 39 39 H 1.09000 * 110.35472 * 322.85068 * 12 11 9 40 40 H 1.08997 * 110.35564 * 85.03530 * 12 11 9 41 41 H 1.09003 * 111.01495 * 205.55285 * 13 12 11 42 42 H 1.09004 * 111.01329 * 81.68083 * 13 12 11 43 43 H 1.09010 * 109.90913 * 59.14553 * 15 11 9 44 44 H 1.09000 * 109.91331 * 297.88478 * 15 11 9 45 45 H 1.08994 * 109.47572 * 57.82345 * 16 14 13 46 46 H 1.09000 * 109.48605 * 297.79786 * 16 14 13 47 47 H 1.08999 * 109.60405 * 293.73998 * 17 16 14 48 48 H 1.09008 * 109.72348 * 173.34781 * 17 16 14 49 49 H 0.96999 * 119.99410 * 354.89940 * 22 21 19 50 50 H 1.08998 * 109.59388 * 173.74974 * 27 18 17 51 51 H 1.08991 * 109.59950 * 294.21630 * 27 18 17 52 52 H 1.09006 * 109.48092 * 302.17798 * 28 14 13 53 53 H 1.08999 * 109.47855 * 62.20920 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0537 -0.7464 1.2458 5 6 3.2730 -1.5246 0.6776 6 6 2.7747 -1.8444 -0.7544 7 1 2.1405 -2.7308 -0.7452 8 6 3.9626 -2.0522 -1.6960 9 6 3.4592 -2.4485 -3.0600 10 8 2.2675 -2.5548 -3.2592 11 7 4.3330 -2.6848 -4.0584 12 6 5.8014 -2.5936 -3.9555 13 6 6.2876 -2.3380 -5.4051 14 6 5.2949 -3.1972 -6.2199 15 6 3.9805 -3.0778 -5.4322 16 6 5.7647 -4.6450 -6.2630 17 6 4.7403 -5.4908 -7.0281 18 7 4.5041 -4.8724 -8.3398 19 6 4.6536 -5.6004 -9.4899 20 1 5.3413 -6.4327 -9.5166 21 6 3.9214 -5.2685 -10.6216 22 7 4.4611 -5.3956 -11.8154 23 14 2.1701 -4.6415 -10.4503 24 1 1.2282 -5.7891 -10.4810 25 1 1.8628 -3.7186 -11.5724 26 1 2.0272 -3.9182 -9.1611 27 6 4.1106 -3.4579 -8.3967 28 6 5.1338 -2.6267 -7.6226 29 8 2.0159 -0.6926 -1.1557 30 1 -0.3633 -1.0276 -0.0093 31 1 -0.3634 0.5058 0.8945 32 1 -0.3634 0.5218 -0.8854 33 1 2.3671 -0.0424 2.0166 34 1 1.2999 -1.4321 1.6325 35 1 3.4560 -2.4383 1.2429 36 1 4.1627 -0.8955 0.6525 37 1 4.6046 -2.8404 -1.3026 38 1 4.5311 -1.1255 -1.7737 39 1 6.0853 -1.7635 -3.3085 40 1 6.2136 -3.5281 -3.5749 41 1 7.3109 -2.6878 -5.5416 42 1 6.1985 -1.2837 -5.6671 43 1 3.3447 -2.3166 -5.8845 44 1 3.4647 -4.0381 -5.4229 45 1 5.8635 -5.0253 -5.2463 46 1 6.7298 -4.6992 -6.7668 47 1 3.8059 -5.5285 -6.4682 48 1 5.1258 -6.5012 -7.1645 49 1 5.3931 -5.6501 -11.9016 50 1 4.0836 -3.1275 -9.4351 51 1 3.1262 -3.3338 -7.9456 52 1 4.7909 -1.5940 -7.5579 53 1 6.0922 -2.6598 -8.1407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040829284.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:37 Heat of formation + Delta-G solvation = -85.727465 kcal Electronic energy + Delta-G solvation = -30642.707650 eV Core-core repulsion = 26706.484021 eV Total energy + Delta-G solvation = -3936.223629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.66572 -40.66950 -39.52869 -37.50193 -34.89036 -33.83287 -33.18673 -33.03029 -32.01556 -30.62679 -30.32862 -28.01580 -26.22448 -25.07406 -24.54436 -23.65687 -22.39209 -22.36903 -21.79932 -20.16875 -20.04026 -18.93179 -18.10421 -17.88327 -17.22646 -16.71318 -16.57113 -16.31504 -16.06961 -15.57092 -15.49760 -15.14674 -15.09771 -14.91538 -14.40760 -14.31396 -14.15323 -13.93849 -13.81063 -13.61979 -13.47051 -13.34356 -13.14200 -12.85546 -12.74595 -12.69319 -12.55393 -12.47467 -12.30603 -12.21247 -12.03346 -11.70270 -11.68001 -11.67028 -11.62872 -11.33153 -11.14377 -11.06330 -10.79530 -10.43962 -10.42102 -9.62442 -9.00140 -8.57742 -5.43195 1.48409 1.51243 1.69507 1.71365 2.01708 2.55134 2.86528 2.94267 3.39557 3.45244 3.57666 3.63550 3.73467 3.75798 3.89102 3.91047 4.15463 4.17425 4.21543 4.27328 4.37392 4.40467 4.44164 4.49376 4.53198 4.58684 4.59448 4.66345 4.68768 4.71535 4.76144 4.79260 4.87203 4.89782 4.92661 4.97971 5.01603 5.05921 5.10155 5.12196 5.13212 5.23840 5.24122 5.24736 5.34481 5.36454 5.38741 5.53450 5.84376 6.25306 6.28685 6.60424 6.90153 7.22614 7.63355 8.14817 8.79124 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002625 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.712684 B =10663.402014 C =11518.647614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.061 3.939 3 H 0.085 0.915 4 C -0.146 4.146 5 C -0.140 4.140 6 C 0.087 3.913 7 H 0.050 0.950 8 C -0.124 4.124 9 C 0.515 3.485 10 O -0.588 6.588 11 N -0.619 5.619 12 C 0.099 3.901 13 C -0.117 4.117 14 C -0.054 4.054 15 C 0.121 3.879 16 C -0.104 4.104 17 C 0.136 3.864 18 N -0.612 5.612 19 C -0.344 4.344 20 H 0.033 0.967 21 C -0.044 4.044 22 N -0.935 5.935 23 Si 1.054 2.946 24 H -0.298 1.298 25 H -0.296 1.296 26 H -0.247 1.247 27 C 0.137 3.863 28 C -0.113 4.113 29 O -0.398 6.398 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.047 0.953 49 H 0.255 0.745 50 H 0.041 0.959 51 H 0.025 0.975 52 H 0.075 0.925 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 12.429 31.787 34.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.004 3.996 3 H 0.103 0.897 4 C -0.183 4.183 5 C -0.178 4.178 6 C 0.029 3.971 7 H 0.068 0.932 8 C -0.163 4.163 9 C 0.306 3.694 10 O -0.468 6.468 11 N -0.353 5.353 12 C -0.022 4.022 13 C -0.155 4.155 14 C -0.055 4.055 15 C -0.002 4.002 16 C -0.142 4.142 17 C 0.011 3.989 18 N -0.337 5.337 19 C -0.474 4.474 20 H 0.051 0.949 21 C -0.243 4.243 22 N -0.575 5.575 23 Si 0.880 3.120 24 H -0.227 1.227 25 H -0.222 1.222 26 H -0.172 1.172 27 C 0.012 3.988 28 C -0.152 4.152 29 O -0.319 6.319 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.043 0.957 52 H 0.093 0.907 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.686 12.886 30.700 33.403 hybrid contribution 0.778 -1.181 -0.244 1.435 sum 3.465 11.705 30.456 32.811 Atomic orbital electron populations 1.22141 0.95441 1.01866 1.02460 1.22941 0.94369 0.96778 0.85498 0.89722 1.23202 0.97843 0.99967 0.97335 1.23332 0.98975 1.02376 0.93074 1.22784 0.91249 0.89015 0.94021 0.93236 1.21921 0.99028 1.05752 0.89603 1.21129 0.85162 0.76082 0.87036 1.90719 1.18191 1.53867 1.84018 1.48772 1.08646 1.67927 1.09993 1.22652 0.77567 1.03715 0.98257 1.22862 0.99407 1.00171 0.93018 1.20870 0.94102 0.96356 0.94146 1.21835 0.97313 0.98777 0.82271 1.21727 0.98650 0.93691 1.00160 1.21167 0.96287 0.95718 0.85713 1.44409 1.81305 1.06165 1.01790 1.19911 1.21231 1.15662 0.90551 0.94900 1.26980 1.06421 0.99517 0.91354 1.70984 1.14752 1.46636 1.25164 0.84112 0.74657 0.76428 0.76786 1.22653 1.22241 1.17218 1.21318 0.95612 0.83821 0.98018 1.21786 1.00027 0.98539 0.94872 1.88571 1.71242 1.40569 1.31506 0.93498 0.89346 0.93625 0.87754 0.90436 0.87905 0.88289 0.84312 0.86159 0.87468 0.89277 0.87715 0.89970 0.93809 0.93515 0.89895 0.91804 0.96299 0.93432 0.93617 0.94041 0.95685 0.90687 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.44 71.98 0.68 -2.07 16 2 C 0.06 1.03 4.16 31.06 0.13 1.15 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.15 -1.47 6.55 31.89 0.21 -1.26 16 5 C -0.14 -1.30 6.58 32.09 0.21 -1.09 16 6 C 0.09 1.62 2.91 31.26 0.09 1.71 16 7 H 0.05 1.16 7.95 -2.39 -0.02 1.14 16 8 C -0.12 -1.95 4.45 29.85 0.13 -1.82 16 9 C 0.52 14.08 7.76 87.66 0.68 14.76 16 10 O -0.59 -22.81 15.89 6.48 0.10 -22.71 16 11 N -0.62 -15.25 3.33 -812.25 -2.71 -17.95 16 12 C 0.10 1.46 6.37 86.88 0.55 2.01 16 13 C -0.12 -2.07 5.99 31.80 0.19 -1.88 16 14 C -0.05 -1.48 0.53 -51.91 -0.03 -1.51 16 15 C 0.12 3.77 5.07 86.49 0.44 4.21 16 16 C -0.10 -3.05 4.78 30.46 0.15 -2.90 16 17 C 0.14 5.42 6.22 86.40 0.54 5.96 16 18 N -0.61 -29.51 2.70 -699.46 -1.89 -31.40 16 19 C -0.34 -19.84 9.70 84.03 0.81 -19.03 16 20 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 21 C -0.04 -2.64 4.82 84.86 0.41 -2.23 16 22 N -0.94 -59.59 13.70 21.65 0.30 -59.30 16 23 Si 1.05 53.88 26.99 68.60 1.85 55.73 16 24 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 25 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 26 H -0.25 -11.66 4.73 99.48 0.47 -11.19 16 27 C 0.14 6.01 4.06 86.26 0.35 6.36 16 28 C -0.11 -3.75 4.69 30.32 0.14 -3.61 16 29 O -0.40 -9.94 10.16 -139.45 -1.42 -11.36 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.79 7.85 -2.39 -0.02 0.77 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.58 8.06 -2.39 -0.02 0.56 16 37 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 1.39 7.85 -2.39 -0.02 1.37 16 39 H 0.11 0.90 7.48 -2.39 -0.02 0.88 16 40 H 0.09 1.02 7.76 -2.39 -0.02 1.00 16 41 H 0.10 1.50 8.01 -2.39 -0.02 1.48 16 42 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 43 H 0.04 1.55 7.59 -2.38 -0.02 1.53 16 44 H 0.05 1.70 6.07 -2.39 -0.01 1.68 16 45 H 0.08 1.98 7.49 -2.39 -0.02 1.96 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.02 0.77 6.53 -2.39 -0.02 0.75 16 48 H 0.05 1.95 7.93 -2.38 -0.02 1.93 16 49 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 50 H 0.04 1.99 5.78 -2.39 -0.01 1.98 16 51 H 0.03 1.13 5.96 -2.39 -0.01 1.11 16 52 H 0.07 2.20 8.10 -2.38 -0.02 2.18 16 53 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -81.36 394.28 2.52 -78.84 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.59 Total: 9.38 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.69 Total: -1.23 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.30 Total: -108.65 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.31 Total: -34.07 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 1.85 Total: 55.73 kcal Total: -81.36 2.52 -78.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040829284.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.887 kcal (2) G-P(sol) polarization free energy of solvation -81.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds