Wall clock time and date at job start Tue Mar 31 2020 21:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.48186 * 2 1 4 4 C 1.53092 * 109.48104 * 120.02236 * 2 1 3 5 5 C 1.53183 * 109.16395 * 177.60578 * 4 2 1 6 6 H 1.08998 * 109.54550 * 62.97120 * 5 4 2 7 7 C 1.50695 * 109.54659 * 183.15469 * 5 4 2 8 8 O 1.21283 * 119.99979 * 93.17315 * 7 5 4 9 9 N 1.34770 * 119.99981 * 273.17722 * 7 5 4 10 10 C 1.47082 * 125.62881 * 355.33735 * 9 7 5 11 11 C 1.54464 * 107.29944 * 179.04056 * 10 9 7 12 12 C 1.54367 * 102.87363 * 338.49936 * 11 10 9 13 13 C 1.47569 * 125.63142 * 175.37486 * 9 7 5 14 14 C 1.52111 * 110.56734 * 152.60108 * 12 11 10 15 15 C 1.53348 * 109.44075 * 182.79562 * 14 12 11 16 16 N 1.46926 * 108.68533 * 306.69825 * 15 14 12 17 17 C 1.36941 * 120.55012 * 234.36383 * 16 15 14 18 18 H 1.08000 * 119.99775 * 39.04004 * 17 16 15 19 19 C 1.38816 * 119.99861 * 219.04244 * 17 16 15 20 20 N 1.31614 * 120.00402 * 3.06386 * 19 17 16 21 21 Si 1.86799 * 119.99625 * 183.06479 * 19 17 16 22 22 H 1.48501 * 109.47352 * 90.00117 * 21 19 17 23 23 H 1.48501 * 109.47085 * 209.99807 * 21 19 17 24 24 H 1.48495 * 109.47196 * 329.99731 * 21 19 17 25 25 C 1.46936 * 118.89791 * 54.35103 * 16 15 14 26 26 C 1.52116 * 110.55057 * 276.68957 * 12 11 10 27 27 C 1.53180 * 109.10601 * 303.06799 * 5 4 2 28 28 C 1.53104 * 109.16187 * 56.84445 * 27 5 4 29 29 O 1.42897 * 109.49154 * 239.97472 * 2 1 3 30 30 H 1.09004 * 109.46778 * 299.97195 * 1 2 3 31 31 H 1.08994 * 109.47660 * 59.97368 * 1 2 3 32 32 H 1.08995 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.52526 * 57.70071 * 4 2 1 34 34 H 1.08997 * 109.57504 * 297.53869 * 4 2 1 35 35 H 1.09004 * 109.88190 * 59.61770 * 10 9 7 36 36 H 1.09000 * 109.87988 * 298.46353 * 10 9 7 37 37 H 1.09000 * 110.73553 * 220.15129 * 11 10 9 38 38 H 1.09001 * 110.88912 * 96.91407 * 11 10 9 39 39 H 1.09008 * 110.37284 * 84.46377 * 13 9 7 40 40 H 1.09002 * 110.38173 * 322.11875 * 13 9 7 41 41 H 1.08994 * 109.47379 * 302.78401 * 14 12 11 42 42 H 1.08994 * 109.47500 * 62.80343 * 14 12 11 43 43 H 1.09000 * 109.59472 * 186.94123 * 15 14 12 44 44 H 1.08996 * 109.73304 * 66.54192 * 15 14 12 45 45 H 0.96995 * 120.00834 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.60242 * 185.88289 * 25 16 15 47 47 H 1.08998 * 109.73700 * 65.48427 * 25 16 15 48 48 H 1.08995 * 109.47678 * 297.18465 * 26 12 11 49 49 H 1.09007 * 109.46882 * 57.19784 * 26 12 11 50 50 H 1.09001 * 109.52624 * 176.84469 * 27 5 4 51 51 H 1.09009 * 109.51992 * 297.02880 * 27 5 4 52 52 H 1.09003 * 109.48244 * 182.49955 * 28 27 5 53 53 H 1.08998 * 109.41167 * 62.51459 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 1.2496 5 6 3.5711 -0.7704 1.2124 6 1 3.9688 0.2440 1.2426 7 6 4.0801 -1.5470 2.3993 8 8 4.2980 -2.7358 2.2980 9 7 4.2930 -0.9206 3.5734 10 6 4.1639 0.5255 3.8088 11 6 4.4792 0.7783 5.2996 12 6 4.2341 -0.6038 5.9421 13 6 4.6950 -1.5722 4.8350 14 6 5.0867 -0.7714 7.1906 15 6 4.8760 -2.1765 7.7676 16 7 3.4356 -2.3965 7.9569 17 6 2.9438 -2.7752 9.1775 18 1 3.3559 -2.3507 10.0810 19 6 1.9157 -3.7048 9.2535 20 7 1.4544 -4.2671 8.1565 21 14 1.1867 -4.1575 10.9127 22 1 0.0534 -3.2485 11.2202 23 1 0.6997 -5.5599 10.8734 24 1 2.2273 -4.0242 11.9636 25 6 2.5317 -2.2032 6.8147 26 6 2.7558 -0.7980 6.2433 27 6 4.0198 -1.4583 -0.0806 28 6 3.4309 -0.7089 -1.2789 29 8 2.0068 -0.6741 -1.1663 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6445 -1.7374 1.2710 34 1 1.7147 -0.1852 2.1404 35 1 3.1470 0.8481 3.5852 36 1 4.8728 1.0677 3.1830 37 1 3.8015 1.5233 5.7165 38 1 5.5166 1.0862 5.4307 39 1 5.7771 -1.6994 4.8684 40 1 4.1954 -2.5352 4.9409 41 1 6.1375 -0.6379 6.9337 42 1 4.7961 -0.0269 7.9317 43 1 5.3875 -2.2583 8.7267 44 1 5.2721 -2.9211 7.0772 45 1 0.7363 -4.9170 8.2096 46 1 1.4979 -2.3028 7.1456 47 1 2.7434 -2.9479 6.0475 48 1 2.4324 -0.0538 6.9711 49 1 2.1797 -0.6828 5.3252 50 1 5.1081 -1.4465 -0.1409 51 1 3.6649 -2.4890 -0.0870 52 1 3.7104 -1.2199 -2.2003 53 1 3.8193 0.3094 -1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040895803.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:43 Heat of formation + Delta-G solvation = -95.817334 kcal Electronic energy + Delta-G solvation = -31319.811678 eV Core-core repulsion = 27383.150520 eV Total energy + Delta-G solvation = -3936.661158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.83513 -40.60281 -39.33915 -37.39545 -35.01567 -34.48469 -33.68870 -32.72778 -31.68285 -30.59731 -29.21250 -28.06766 -26.64252 -25.50108 -24.26684 -23.87374 -23.33596 -22.23780 -21.56610 -20.01529 -19.77140 -18.53882 -18.03567 -17.33941 -17.16807 -16.95435 -16.85993 -16.25998 -15.79727 -15.75669 -15.38545 -15.28947 -14.91844 -14.73129 -14.68397 -14.46484 -14.25832 -13.90878 -13.67136 -13.47077 -13.37512 -13.18008 -13.05463 -12.92815 -12.85929 -12.70456 -12.68491 -12.48349 -12.36655 -12.18114 -12.04321 -11.88828 -11.87745 -11.76107 -11.49588 -11.43455 -11.07028 -11.04913 -10.90982 -10.56071 -10.38357 -9.64713 -8.51548 -7.88887 -5.49803 1.43555 1.44904 1.52675 1.54419 1.96447 2.47437 2.84971 3.25577 3.34417 3.59361 3.62452 3.68275 3.70795 3.75820 3.88191 3.90496 4.16035 4.21919 4.26580 4.29298 4.39066 4.41110 4.43509 4.49815 4.53777 4.63578 4.67433 4.70408 4.71962 4.72933 4.77502 4.82335 4.87398 4.95665 4.96447 5.03441 5.03755 5.09477 5.11553 5.19371 5.26572 5.27625 5.32499 5.36593 5.40676 5.42270 5.52008 5.63382 5.76465 6.31482 6.43176 6.54037 7.11275 7.16208 7.83182 8.40497 9.15724 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003014 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.005683 B = 9288.958024 C =10054.383658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.092 3.908 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.092 4.092 6 H 0.127 0.873 7 C 0.521 3.479 8 O -0.596 6.596 9 N -0.614 5.614 10 C 0.096 3.904 11 C -0.112 4.112 12 C -0.054 4.054 13 C 0.119 3.881 14 C -0.104 4.104 15 C 0.137 3.863 16 N -0.608 5.608 17 C -0.267 4.267 18 H 0.066 0.934 19 C -0.045 4.045 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.186 3.814 26 C -0.108 4.108 27 C -0.139 4.139 28 C 0.067 3.933 29 O -0.401 6.401 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.000 1.000 45 H 0.249 0.751 46 H 0.040 0.960 47 H -0.021 1.021 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.083 0.917 51 H 0.049 0.951 52 H 0.107 0.893 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 18.972 -16.371 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.107 0.893 4 C -0.174 4.174 5 C -0.113 4.113 6 H 0.145 0.855 7 C 0.311 3.689 8 O -0.477 6.477 9 N -0.346 5.346 10 C -0.025 4.025 11 C -0.150 4.150 12 C -0.055 4.055 13 C -0.004 4.004 14 C -0.143 4.143 15 C 0.012 3.988 16 N -0.332 5.332 17 C -0.398 4.398 18 H 0.083 0.917 19 C -0.241 4.241 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.190 1.190 25 C 0.061 3.939 26 C -0.147 4.147 27 C -0.177 4.177 28 C -0.009 4.009 29 O -0.321 6.321 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.018 0.982 45 H 0.058 0.942 46 H 0.059 0.941 47 H -0.003 1.003 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.102 0.898 51 H 0.068 0.932 52 H 0.125 0.875 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.088 18.124 -16.634 25.121 hybrid contribution -0.471 -1.647 1.269 2.131 sum 4.618 16.477 -15.365 22.998 Atomic orbital electron populations 1.21809 0.92400 1.02517 1.03692 1.22188 0.95680 0.95515 0.83128 0.89340 1.22175 0.92722 1.01734 1.00800 1.21354 0.97298 1.01087 0.91601 0.85511 1.21009 0.76657 0.87158 0.84048 1.90689 1.54294 1.18278 1.84447 1.48720 1.67084 1.10169 1.08618 1.22412 1.03178 0.78902 0.98038 1.22704 1.04223 0.95379 0.92675 1.20913 0.95264 0.95522 0.93797 1.22139 0.98761 0.96304 0.83229 1.21719 0.99243 0.97358 0.95979 1.21134 0.84870 0.94838 0.97946 1.44169 1.01458 1.79956 1.07654 1.19465 1.17151 1.17307 0.85874 0.91691 1.26210 1.01480 0.96332 1.00104 1.70151 1.29231 1.30416 1.28426 0.85245 0.78474 0.76674 0.79895 1.20699 1.22349 1.18969 1.20457 0.94164 0.91833 0.87495 1.21759 0.95336 0.98146 0.99424 1.22079 1.01872 0.99907 0.93890 1.22683 0.79996 1.00731 0.97501 1.87929 1.22153 1.78597 1.43427 0.89431 0.90775 0.93425 0.93682 0.89192 0.89851 0.88229 0.88124 0.88381 0.91635 0.94842 0.89574 0.91005 0.92771 0.98186 0.94221 0.94110 1.00311 0.91758 0.92643 0.89843 0.93228 0.87471 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.57 71.98 0.69 -1.55 16 2 C 0.09 1.51 3.26 30.62 0.10 1.61 16 3 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.14 -2.81 4.69 30.69 0.14 -2.67 16 5 C -0.09 -1.92 2.18 -11.42 -0.02 -1.94 16 6 H 0.13 1.66 7.25 -2.39 -0.02 1.64 16 7 C 0.52 16.11 6.95 87.66 0.61 16.72 16 8 O -0.60 -25.21 16.37 -3.04 -0.05 -25.26 16 9 N -0.61 -16.91 3.32 -812.53 -2.70 -19.60 16 10 C 0.10 1.61 5.72 86.77 0.50 2.11 16 11 C -0.11 -1.99 5.89 31.56 0.19 -1.81 16 12 C -0.05 -1.57 0.54 -51.92 -0.03 -1.60 16 13 C 0.12 3.98 4.87 86.56 0.42 4.40 16 14 C -0.10 -3.14 4.83 30.42 0.15 -2.99 16 15 C 0.14 5.76 6.24 86.41 0.54 6.30 16 16 N -0.61 -31.26 2.94 -698.49 -2.05 -33.32 16 17 C -0.27 -14.97 9.49 84.03 0.80 -14.17 16 18 H 0.07 3.51 7.83 -2.91 -0.02 3.48 16 19 C -0.05 -2.61 5.17 84.86 0.44 -2.17 16 20 N -0.94 -58.02 11.21 21.65 0.24 -57.78 16 21 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 C 0.19 9.35 4.90 86.41 0.42 9.77 16 26 C -0.11 -3.89 4.83 30.41 0.15 -3.74 16 27 C -0.14 -2.90 5.04 30.69 0.15 -2.75 16 28 C 0.07 1.03 6.84 72.02 0.49 1.53 16 29 O -0.40 -8.09 10.41 -148.98 -1.55 -9.64 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.64 7.70 -2.39 -0.02 1.62 16 35 H 0.08 1.17 7.70 -2.39 -0.02 1.15 16 36 H 0.10 1.05 7.98 -2.39 -0.02 1.03 16 37 H 0.10 1.50 8.01 -2.39 -0.02 1.48 16 38 H 0.10 1.36 7.99 -2.39 -0.02 1.34 16 39 H 0.07 2.10 7.97 -2.38 -0.02 2.09 16 40 H 0.03 1.49 6.15 -2.39 -0.01 1.48 16 41 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 44 H 0.00 0.01 7.64 -2.39 -0.02 -0.01 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.04 2.33 6.43 -2.39 -0.02 2.32 16 47 H -0.02 -1.21 6.58 -2.39 -0.02 -1.22 16 48 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.05 1.88 7.84 -2.38 -0.02 1.86 16 50 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.05 1.39 7.76 -2.38 -0.02 1.37 16 52 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -78.95 396.74 2.52 -76.43 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.86 Total: 14.43 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.73 Total: 7.05 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.51 Total: -110.70 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.60 Total: -34.90 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.95 2.52 -76.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040895803.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.389 kcal (2) G-P(sol) polarization free energy of solvation -78.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds