Wall clock time and date at job start Tue Mar 31 2020 21:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.48702 * 2 1 4 4 C 1.53090 * 109.48467 * 239.96950 * 2 1 3 5 5 C 1.53174 * 109.16473 * 182.40911 * 4 2 1 6 6 H 1.09003 * 109.54104 * 297.11014 * 5 4 2 7 7 C 1.50696 * 109.54248 * 176.84736 * 5 4 2 8 8 O 1.21283 * 120.00403 * 267.21091 * 7 5 4 9 9 N 1.34785 * 120.00354 * 87.21159 * 7 5 4 10 10 C 1.47080 * 125.62415 * 4.62604 * 9 7 5 11 11 C 1.54452 * 107.29667 * 180.96901 * 10 9 7 12 12 C 1.54390 * 102.87165 * 21.50612 * 11 10 9 13 13 C 1.47569 * 125.63090 * 184.32687 * 9 7 5 14 14 C 1.52101 * 110.51372 * 207.35878 * 12 11 10 15 15 C 1.53343 * 109.44213 * 295.90429 * 14 12 11 16 16 N 1.46931 * 108.68901 * 306.70313 * 15 14 12 17 17 C 1.36940 * 120.55060 * 234.36409 * 16 15 14 18 18 H 1.07996 * 119.99929 * 39.04013 * 17 16 15 19 19 C 1.38814 * 120.00181 * 219.03234 * 17 16 15 20 20 N 1.31617 * 119.99496 * 3.08794 * 19 17 16 21 21 Si 1.86790 * 120.00185 * 183.08431 * 19 17 16 22 22 H 1.48499 * 109.47000 * 90.00077 * 21 19 17 23 23 H 1.48500 * 109.47182 * 210.00045 * 21 19 17 24 24 H 1.48504 * 109.47186 * 330.00233 * 21 19 17 25 25 C 1.46934 * 118.89567 * 54.34633 * 16 15 14 26 26 C 1.52111 * 110.50610 * 83.33109 * 12 11 10 27 27 C 1.53175 * 109.03889 * 56.97787 * 5 4 2 28 28 C 1.53090 * 109.16083 * 303.02105 * 27 5 4 29 29 O 1.42898 * 109.41783 * 57.61047 * 28 27 5 30 30 H 1.08998 * 109.47474 * 299.97262 * 1 2 3 31 31 H 1.08998 * 109.47359 * 59.97451 * 1 2 3 32 32 H 1.09011 * 109.46759 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52387 * 62.49849 * 4 2 1 34 34 H 1.09002 * 109.51812 * 302.31077 * 4 2 1 35 35 H 1.08999 * 109.88133 * 300.39266 * 10 9 7 36 36 H 1.09000 * 109.87757 * 61.54693 * 10 9 7 37 37 H 1.08997 * 110.73621 * 139.85217 * 11 10 9 38 38 H 1.08999 * 110.73711 * 262.98296 * 11 10 9 39 39 H 1.09005 * 110.37267 * 275.51929 * 13 9 7 40 40 H 1.08999 * 110.37598 * 37.86592 * 13 9 7 41 41 H 1.09001 * 109.47591 * 55.89706 * 14 12 11 42 42 H 1.09004 * 109.47850 * 175.91689 * 14 12 11 43 43 H 1.08997 * 109.60196 * 186.93995 * 15 14 12 44 44 H 1.08999 * 109.59974 * 66.46515 * 15 14 12 45 45 H 0.97005 * 119.99722 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.59962 * 185.88747 * 25 16 15 47 47 H 1.09005 * 109.73416 * 65.48667 * 25 16 15 48 48 H 1.09006 * 109.47365 * 184.08646 * 26 12 11 49 49 H 1.09008 * 109.47700 * 304.09164 * 26 12 11 50 50 H 1.09001 * 109.52039 * 62.92574 * 27 5 4 51 51 H 1.09004 * 109.52364 * 183.05240 * 27 5 4 52 52 H 1.09005 * 109.47614 * 177.59246 * 28 27 5 53 53 H 1.09003 * 109.48402 * 297.61286 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5711 -0.7709 -1.2120 6 1 3.9689 0.2436 -1.2407 7 6 4.0800 -1.5476 -2.3989 8 8 4.2911 -2.7378 -2.2995 9 7 4.3007 -0.9197 -3.5709 10 6 4.1798 0.5275 -3.8036 11 6 4.5020 0.7818 -5.2926 12 6 4.2521 -0.5978 -5.9390 13 6 4.7096 -1.5700 -4.8309 14 6 5.1082 -0.7655 -7.1850 15 6 4.6851 0.2662 -8.2376 16 7 3.2359 0.1532 -8.4518 17 6 2.7311 -0.0388 -9.7102 18 1 3.2405 -0.6930 -10.4023 19 6 1.5648 0.6073 -10.0962 20 7 0.9772 1.4512 -9.2747 21 14 0.8292 0.2792 -11.7816 22 1 -0.1236 -0.8564 -11.6932 23 1 0.1125 1.4911 -12.2534 24 1 1.9140 -0.0582 -12.7380 25 6 2.3373 0.2492 -7.2932 26 6 2.7738 -0.7825 -6.2462 27 6 4.0177 -1.4599 0.0811 28 6 3.4307 -0.7091 1.2791 29 8 2.0066 -0.6741 1.1665 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 -0.3633 -1.0278 -0.0005 33 1 1.7149 -0.1844 -2.1399 34 1 1.6444 -1.7375 -1.2707 35 1 3.1637 0.8548 -3.5831 36 1 4.8891 1.0647 -3.1740 37 1 3.8296 1.5311 -5.7104 38 1 5.5412 1.0863 -5.4160 39 1 5.7918 -1.6980 -4.8581 40 1 4.2099 -2.5324 -4.9409 41 1 6.1567 -0.6141 -6.9286 42 1 4.9734 -1.7701 -7.5861 43 1 5.2094 0.0704 -9.1729 44 1 4.9254 1.2689 -7.8840 45 1 0.1619 1.9024 -9.5443 46 1 1.3139 0.0422 -7.6061 47 1 2.3936 1.2503 -6.8657 48 1 2.6060 -1.7873 -6.6340 49 1 2.1930 -0.6432 -5.3343 50 1 3.6614 -2.4901 0.0866 51 1 5.1060 -1.4506 0.1417 52 1 3.7100 -1.2201 2.2006 53 1 3.8193 0.3091 1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040895804.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:47 Heat of formation + Delta-G solvation = -94.290951 kcal Electronic energy + Delta-G solvation = -31103.054745 eV Core-core repulsion = 27166.459776 eV Total energy + Delta-G solvation = -3936.594970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.82602 -40.60683 -39.37184 -37.35753 -34.99685 -34.49246 -33.68701 -32.54766 -31.65941 -30.64061 -29.28648 -28.32239 -26.33613 -25.40585 -24.23353 -23.77965 -23.36520 -22.47350 -21.46579 -20.27916 -19.52488 -18.53030 -17.86126 -17.33780 -17.15847 -16.95324 -16.82812 -16.30215 -15.83048 -15.77945 -15.46793 -15.17915 -15.01420 -14.78716 -14.55385 -14.40174 -14.24273 -13.93969 -13.69037 -13.48142 -13.45378 -13.20513 -13.17690 -12.89902 -12.84441 -12.66464 -12.52173 -12.45173 -12.31294 -12.15888 -12.04396 -11.86089 -11.77566 -11.76072 -11.48544 -11.41307 -11.15059 -11.08465 -10.90203 -10.51737 -10.38141 -9.66558 -8.45824 -7.86098 -5.44610 1.45671 1.46785 1.51194 1.55357 1.93961 2.49863 2.84469 3.26716 3.33589 3.58949 3.61646 3.68482 3.72172 3.78640 3.88166 3.91013 4.15912 4.21784 4.26802 4.29380 4.37043 4.39685 4.44333 4.50036 4.54223 4.60758 4.66950 4.71809 4.71985 4.75038 4.77616 4.81834 4.90790 4.94578 4.95158 5.03507 5.05308 5.07767 5.10261 5.19002 5.26921 5.28461 5.31635 5.35572 5.40287 5.44772 5.56423 5.67649 5.82444 6.30694 6.47818 6.50202 7.07930 7.21276 7.88670 8.43936 9.17950 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.002822 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.142079 B = 9920.052849 C =10941.271913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 H 0.081 0.919 4 C -0.135 4.135 5 C -0.098 4.098 6 H 0.119 0.881 7 C 0.528 3.472 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.103 3.897 11 C -0.118 4.118 12 C -0.052 4.052 13 C 0.119 3.881 14 C -0.108 4.108 15 C 0.146 3.854 16 N -0.610 5.610 17 C -0.269 4.269 18 H 0.056 0.944 19 C -0.038 4.038 20 N -0.928 5.928 21 Si 0.962 3.038 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.189 3.811 26 C -0.110 4.110 27 C -0.136 4.136 28 C 0.065 3.935 29 O -0.400 6.400 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.250 0.750 46 H 0.038 0.962 47 H 0.012 0.988 48 H 0.034 0.966 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.083 0.917 52 H 0.109 0.891 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 1.622 20.094 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.173 4.173 5 C -0.119 4.119 6 H 0.137 0.863 7 C 0.318 3.682 8 O -0.470 6.470 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.156 4.156 12 C -0.053 4.053 13 C -0.003 4.003 14 C -0.148 4.148 15 C 0.021 3.979 16 N -0.334 5.334 17 C -0.400 4.400 18 H 0.073 0.927 19 C -0.234 4.234 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.195 1.195 25 C 0.064 3.936 26 C -0.149 4.149 27 C -0.174 4.174 28 C -0.012 4.012 29 O -0.319 6.319 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.030 0.970 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.127 0.873 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.653 0.994 20.311 21.396 hybrid contribution -0.613 -0.418 -1.604 1.767 sum 6.041 0.576 18.707 19.667 Atomic orbital electron populations 1.21802 0.92373 1.02708 1.03509 1.22166 0.95712 0.95381 0.83423 0.90067 1.22152 0.92757 1.01975 1.00432 1.21371 0.97325 1.01054 0.92128 0.86285 1.20807 0.76537 0.87147 0.83676 1.90666 1.54435 1.17582 1.84280 1.48680 1.66979 1.09661 1.09148 1.22281 1.02764 0.79492 0.97381 1.22659 1.03334 0.96484 0.93107 1.20898 0.95148 0.95326 0.93890 1.22236 0.99645 0.95941 0.82510 1.21734 0.98848 0.99557 0.94623 1.21052 0.84330 0.95897 0.96629 1.44158 1.01296 1.84950 1.02976 1.19365 1.08457 1.20861 0.91317 0.92664 1.26038 1.00520 0.96253 1.00615 1.70076 1.20049 1.30336 1.36821 0.85360 0.78239 0.76666 0.80687 1.21421 1.21755 1.19451 1.20493 0.93653 0.93752 0.85747 1.21778 0.95363 0.99294 0.98467 1.22054 1.01886 1.00023 0.93484 1.22699 0.80023 1.00620 0.97817 1.87927 1.22165 1.78463 1.43372 0.90967 0.89788 0.92885 0.89658 0.92774 0.90536 0.88447 0.90486 0.88880 0.90437 0.93015 0.89443 0.93379 0.93307 0.95614 0.94044 0.94321 0.96958 0.94666 0.92557 0.92528 0.89802 0.87284 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.56 71.98 0.69 -1.54 16 2 C 0.09 1.48 3.26 30.62 0.10 1.58 16 3 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.13 -2.61 4.69 30.68 0.14 -2.47 16 5 C -0.10 -1.87 2.19 -11.42 -0.02 -1.90 16 6 H 0.12 1.60 7.25 -2.39 -0.02 1.58 16 7 C 0.53 14.28 6.94 87.65 0.61 14.89 16 8 O -0.59 -21.07 16.37 -3.04 -0.05 -21.12 16 9 N -0.61 -15.27 3.32 -812.13 -2.69 -17.97 16 10 C 0.10 1.99 5.70 86.76 0.49 2.48 16 11 C -0.12 -2.82 4.91 31.56 0.16 -2.67 16 12 C -0.05 -1.51 0.55 -51.84 -0.03 -1.54 16 13 C 0.12 3.32 5.81 86.63 0.50 3.82 16 14 C -0.11 -3.32 4.84 30.41 0.15 -3.17 16 15 C 0.15 5.64 6.24 86.41 0.54 6.18 16 16 N -0.61 -29.50 2.94 -698.49 -2.05 -31.55 16 17 C -0.27 -14.63 9.49 84.03 0.80 -13.83 16 18 H 0.06 2.98 7.83 -2.91 -0.02 2.96 16 19 C -0.04 -2.07 5.17 84.86 0.44 -1.63 16 20 N -0.93 -53.38 11.21 21.65 0.24 -53.13 16 21 Si 0.96 44.36 29.55 68.60 2.03 46.38 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.19 8.66 4.91 86.41 0.42 9.08 16 26 C -0.11 -4.02 4.87 30.41 0.15 -3.87 16 27 C -0.14 -2.53 5.04 30.68 0.15 -2.37 16 28 C 0.06 0.93 6.84 72.01 0.49 1.42 16 29 O -0.40 -7.69 10.41 -148.98 -1.55 -9.24 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.08 1.56 7.74 -2.39 -0.02 1.54 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.40 7.74 -2.39 -0.02 1.38 16 36 H 0.10 1.32 7.98 -2.39 -0.02 1.30 16 37 H 0.08 2.17 6.18 -2.39 -0.01 2.15 16 38 H 0.09 1.88 7.99 -2.39 -0.02 1.86 16 39 H 0.08 1.97 8.00 -2.38 -0.02 1.95 16 40 H 0.05 1.68 7.99 -2.39 -0.02 1.66 16 41 H 0.09 2.11 8.10 -2.39 -0.02 2.09 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 44 H 0.03 0.97 7.62 -2.39 -0.02 0.95 16 45 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 46 H 0.04 2.08 6.43 -2.39 -0.02 2.06 16 47 H 0.01 0.58 6.56 -2.38 -0.02 0.57 16 48 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.06 1.92 7.82 -2.38 -0.02 1.90 16 50 H 0.06 1.38 7.76 -2.39 -0.02 1.36 16 51 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -69.17 396.77 2.57 -66.60 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.86 Total: 15.56 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.78 Total: 4.47 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -4.50 Total: -102.65 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.60 Total: -30.36 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.17 2.57 -66.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040895804.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.690 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds