Wall clock time and date at job start Tue Mar 31 2020 20:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.69739 * 2 1 4 4 C 1.53188 * 109.58607 * 120.35275 * 2 1 3 5 5 C 1.53039 * 109.31640 * 65.15379 * 4 2 1 6 6 H 1.09001 * 109.44425 * 301.35565 * 5 4 2 7 7 N 1.46492 * 109.46626 * 181.38362 * 5 4 2 8 8 C 1.36935 * 120.00376 * 154.93195 * 7 5 4 9 9 H 1.08003 * 119.99724 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00063 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99887 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99941 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00122 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00115 * 12 10 8 16 16 C 1.53040 * 109.53570 * 61.36373 * 5 4 2 17 17 C 1.53194 * 109.31500 * 298.63857 * 16 5 4 18 18 N 1.46922 * 109.58745 * 239.64342 * 2 1 3 19 19 C 1.34782 * 120.62941 * 113.80070 * 18 2 1 20 20 O 1.21279 * 120.00392 * 0.02562 * 19 18 2 21 21 C 1.50706 * 119.99590 * 180.02562 * 19 18 2 22 22 C 1.53863 * 113.59910 * 279.17053 * 21 19 18 23 23 C 1.53483 * 86.88713 * 220.36925 * 22 21 19 24 24 C 1.53321 * 87.57879 * 25.11422 * 23 22 21 25 25 C 1.52821 * 113.69375 * 139.90314 * 23 22 21 26 26 C 1.53274 * 108.87764 * 184.07946 * 25 23 22 27 27 O 1.42894 * 109.32664 * 304.68974 * 26 25 23 28 28 C 1.42903 * 114.35956 * 62.99784 * 27 26 25 29 29 C 1.52832 * 113.56434 * 270.34201 * 23 22 21 30 30 H 1.08997 * 109.46760 * 180.35842 * 1 2 3 31 31 H 1.08996 * 109.47068 * 300.35580 * 1 2 3 32 32 H 1.08998 * 109.47194 * 60.36016 * 1 2 3 33 33 H 1.08999 * 109.50079 * 305.20329 * 4 2 1 34 34 H 1.09001 * 109.49736 * 185.10563 * 4 2 1 35 35 H 0.97009 * 119.99477 * 334.93780 * 7 5 4 36 36 H 0.97006 * 119.99732 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.50284 * 58.58446 * 16 5 4 38 38 H 1.08997 * 109.49953 * 178.65617 * 16 5 4 39 39 H 1.08999 * 109.59269 * 174.42562 * 17 16 5 40 40 H 1.09003 * 109.58586 * 294.85032 * 17 16 5 41 41 H 1.08998 * 112.83772 * 50.33354 * 21 19 18 42 42 H 1.09004 * 113.64143 * 334.85445 * 22 21 19 43 43 H 1.09005 * 113.63375 * 105.82813 * 22 21 19 44 44 H 1.09004 * 113.63454 * 220.37784 * 24 23 22 45 45 H 1.08992 * 113.63985 * 89.40160 * 24 23 22 46 46 H 1.08994 * 109.57324 * 303.89604 * 25 23 22 47 47 H 1.08996 * 109.56812 * 64.26095 * 25 23 22 48 48 H 1.08996 * 109.49251 * 184.73751 * 26 25 23 49 49 H 1.08996 * 109.49082 * 64.64844 * 26 25 23 50 50 H 1.08994 * 109.49422 * 177.04970 * 28 27 26 51 51 H 1.08995 * 109.51784 * 56.97490 * 28 27 26 52 52 H 1.08999 * 109.57126 * 295.67597 * 29 23 22 53 53 H 1.09004 * 109.56861 * 56.04180 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 1.6415 -2.2040 1.1703 6 1 0.5565 -2.2812 1.0993 7 7 2.1024 -2.8977 2.3754 8 6 1.4642 -4.0330 2.7983 9 1 0.6213 -4.4173 2.2431 10 6 1.9006 -4.6900 3.9406 11 7 1.2875 -5.7816 4.3468 12 14 3.3589 -4.0257 4.9006 13 1 2.8791 -3.0722 5.9331 14 1 4.2849 -3.3267 3.9735 15 1 4.0722 -5.1499 5.5583 16 6 2.2801 -2.8463 -0.0633 17 6 1.7693 -2.1410 -1.3236 18 7 2.0226 -0.6995 -1.1944 19 6 2.6937 -0.0316 -2.1536 20 8 2.8966 1.1583 -2.0352 21 6 3.1921 -0.7633 -3.3732 22 6 4.5094 -1.5233 -3.1400 23 6 4.9354 -1.0440 -4.5344 24 6 3.9687 0.1323 -4.3542 25 6 6.4023 -0.6235 -4.6177 26 6 6.6812 -0.0718 -6.0202 27 8 6.3086 -1.0478 -6.9951 28 6 4.9167 -1.3716 -7.0029 29 6 4.5345 -1.9994 -5.6579 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.6075 -0.2784 2.1368 34 1 3.1297 -0.6502 1.2913 35 1 2.8596 -2.5526 2.8740 36 1 1.5923 -6.2404 5.1453 37 1 3.3640 -2.7473 -0.0052 38 1 2.0129 -3.9023 -0.1032 39 1 2.2945 -2.5275 -2.1971 40 1 0.6988 -2.3156 -1.4316 41 1 2.4191 -1.3656 -3.8504 42 1 5.1147 -1.1114 -2.3325 43 1 4.3836 -2.6037 -3.0678 44 1 3.4091 0.3802 -5.2562 45 1 4.4237 1.0038 -3.8838 46 1 6.6036 0.1485 -3.8750 47 1 7.0407 -1.4871 -4.4314 48 1 7.7433 0.1529 -6.1180 49 1 6.1007 0.8375 -6.1754 50 1 4.7124 -2.0796 -7.8060 51 1 4.3328 -0.4647 -7.1601 52 1 5.0584 -2.9474 -5.5354 53 1 3.4581 -2.1684 -5.6267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044821674.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:46 Heat of formation + Delta-G solvation = -77.355264 kcal Electronic energy + Delta-G solvation = -30832.390415 eV Core-core repulsion = 26896.529832 eV Total energy + Delta-G solvation = -3935.860583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.17715 -40.79354 -39.07360 -37.89462 -36.33888 -34.01575 -33.51950 -32.19496 -31.87096 -31.43265 -28.70738 -27.00656 -26.47311 -25.67759 -24.65018 -24.29408 -23.50223 -22.54024 -21.22662 -20.02319 -19.19551 -18.98320 -18.37532 -17.25991 -16.93266 -16.79686 -16.78252 -16.33351 -15.95716 -15.80437 -15.61759 -15.25626 -14.98202 -14.87760 -14.77879 -14.65030 -14.41251 -14.00753 -13.91609 -13.56799 -13.44745 -13.12832 -13.03051 -12.97981 -12.75787 -12.71318 -12.52086 -12.42517 -12.20733 -12.18019 -12.07053 -12.02762 -11.92005 -11.78198 -11.44116 -11.32666 -11.15411 -10.99348 -10.91148 -10.62562 -10.25424 -9.65490 -9.30100 -8.01139 -5.33651 1.37777 1.39390 1.46645 1.60578 2.00135 2.48493 3.01042 3.30185 3.38854 3.41150 3.52279 3.53031 3.69186 3.73167 3.92854 4.01805 4.06800 4.12467 4.14088 4.22522 4.25474 4.33779 4.39406 4.50103 4.51007 4.56635 4.57518 4.61731 4.72628 4.75436 4.78535 4.78707 4.80133 4.83829 4.92574 4.97879 5.00971 5.03694 5.05633 5.09244 5.13926 5.19612 5.23885 5.30977 5.38370 5.47862 5.53330 5.65980 5.79527 6.23164 6.32225 6.46818 7.09008 7.18477 7.86002 8.03819 9.20246 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.002753 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.973351 B =10167.234578 C =10984.743751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.086 0.914 4 C -0.127 4.127 5 C 0.177 3.823 6 H 0.054 0.946 7 N -0.753 5.753 8 C -0.221 4.221 9 H 0.063 0.937 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.949 3.051 13 H -0.281 1.281 14 H -0.256 1.256 15 H -0.299 1.299 16 C -0.142 4.142 17 C 0.115 3.885 18 N -0.600 5.600 19 C 0.521 3.479 20 O -0.586 6.586 21 C -0.130 4.130 22 C -0.110 4.110 23 C -0.075 4.075 24 C -0.105 4.105 25 C -0.138 4.138 26 C 0.061 3.939 27 O -0.405 6.405 28 C 0.057 3.943 29 C -0.128 4.128 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.054 0.946 50 H 0.106 0.894 51 H 0.056 0.944 52 H 0.075 0.925 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 12.167 -23.777 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.166 4.166 5 C 0.070 3.930 6 H 0.072 0.928 7 N -0.395 5.395 8 C -0.352 4.352 9 H 0.081 0.919 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.208 1.208 14 H -0.181 1.181 15 H -0.226 1.226 16 C -0.183 4.183 17 C -0.007 4.007 18 N -0.331 5.331 19 C 0.311 3.689 20 O -0.467 6.467 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.142 4.142 25 C -0.176 4.176 26 C -0.015 4.015 27 O -0.324 6.324 28 C -0.019 4.019 29 C -0.166 4.166 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.194 0.806 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.154 0.846 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.118 0.882 49 H 0.072 0.928 50 H 0.124 0.876 51 H 0.075 0.925 52 H 0.093 0.907 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.080 12.535 -23.826 27.600 hybrid contribution 0.556 0.022 1.693 1.782 sum 6.636 12.556 -22.133 26.297 Atomic orbital electron populations 1.22081 0.93627 1.02824 1.02697 1.21047 0.95046 0.96358 0.83523 0.89542 1.22127 1.00792 0.95634 0.98042 1.20408 0.97227 0.89981 0.85430 0.92790 1.42863 1.37231 1.29621 1.29825 1.19016 1.09648 1.00368 1.06123 0.91942 1.25413 1.02250 0.97935 0.99874 1.69869 1.45059 1.21541 1.26966 0.85494 0.80396 0.77258 0.79085 1.20783 1.18118 1.22559 1.22427 1.00471 1.00063 0.95301 1.21849 1.01995 0.78255 0.98643 1.48317 1.54768 1.09886 1.20147 1.21060 0.76264 0.86888 0.84650 1.90635 1.59049 1.17132 1.79884 1.22847 0.98789 0.99620 0.93810 1.22921 0.94001 1.00801 0.97042 1.21502 0.94718 0.96281 0.95002 1.22838 0.96688 0.96440 0.98259 1.22092 0.95693 1.01717 0.98099 1.22645 1.01270 0.90554 0.87045 1.87869 1.26071 1.61195 1.57245 1.22752 0.81540 1.00079 0.97578 1.21992 1.02868 0.98222 0.93497 0.91894 0.90715 0.92059 0.90512 0.92620 0.80565 0.93495 0.92816 0.91795 0.87379 0.90145 0.84553 0.91133 0.89193 0.89995 0.90634 0.90941 0.91162 0.88221 0.92779 0.87614 0.92535 0.90661 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.03 71.98 0.65 -2.84 16 2 C 0.14 3.72 3.21 44.97 0.14 3.86 16 3 H 0.09 2.43 7.01 -2.39 -0.02 2.42 16 4 C -0.13 -3.74 5.02 30.67 0.15 -3.58 16 5 C 0.18 6.10 2.52 45.02 0.11 6.21 16 6 H 0.05 1.94 6.43 -2.39 -0.02 1.92 16 7 N -0.75 -33.43 4.92 -322.83 -1.59 -35.02 16 8 C -0.22 -12.01 10.41 84.03 0.87 -11.13 16 9 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 11 N -0.98 -61.90 13.97 21.65 0.30 -61.59 16 12 Si 0.95 45.10 27.73 68.60 1.90 47.00 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.26 -11.10 6.52 99.48 0.65 -10.45 16 15 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 16 C -0.14 -4.18 5.66 30.67 0.17 -4.00 16 17 C 0.12 2.44 5.89 86.36 0.51 2.95 16 18 N -0.60 -14.27 2.68 -795.02 -2.13 -16.40 16 19 C 0.52 12.83 7.22 87.66 0.63 13.47 16 20 O -0.59 -18.75 15.32 -3.03 -0.05 -18.80 16 21 C -0.13 -2.18 2.37 -10.96 -0.03 -2.20 16 22 C -0.11 -1.77 6.31 31.05 0.20 -1.57 16 23 C -0.07 -1.05 0.77 -52.03 -0.04 -1.09 16 24 C -0.10 -1.70 6.35 30.99 0.20 -1.50 16 25 C -0.14 -2.03 5.34 30.63 0.16 -1.87 16 26 C 0.06 0.87 6.78 72.07 0.49 1.36 16 27 O -0.40 -6.86 10.72 -148.98 -1.60 -8.46 16 28 C 0.06 0.68 6.78 72.07 0.49 1.17 16 29 C -0.13 -1.44 5.23 30.63 0.16 -1.28 16 30 H 0.06 1.47 5.72 -2.39 -0.01 1.45 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.36 15.84 5.66 -92.70 -0.52 15.32 16 36 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 1.71 5.36 -2.39 -0.01 1.69 16 40 H 0.08 1.57 7.50 -2.39 -0.02 1.56 16 41 H 0.14 1.62 7.06 -2.39 -0.02 1.61 16 42 H 0.07 1.40 8.05 -2.38 -0.02 1.38 16 43 H 0.09 1.26 7.84 -2.38 -0.02 1.24 16 44 H 0.08 1.13 7.63 -2.38 -0.02 1.11 16 45 H 0.08 1.58 7.32 -2.39 -0.02 1.56 16 46 H 0.07 1.10 8.04 -2.39 -0.02 1.09 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 0.72 8.12 -2.39 -0.02 0.70 16 50 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 0.61 7.68 -2.39 -0.02 0.59 16 52 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.09 0.76 7.35 -2.38 -0.02 0.74 16 Total: -1.00 -70.38 395.03 2.49 -67.89 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.31 Total: 30.61 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.35 Total: -5.23 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.42 Total: -113.01 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.64 Total: -27.26 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -70.38 2.49 -67.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044821674.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.468 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds