Wall clock time and date at job start Tue Mar 31 2020 20:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.58457 * 2 1 4 4 C 1.53187 * 109.58770 * 239.71450 * 2 1 3 5 5 C 1.53082 * 109.29235 * 185.72087 * 4 2 1 6 6 H 1.09000 * 109.33436 * 301.13673 * 5 4 2 7 7 N 1.46506 * 109.45080 * 181.24611 * 5 4 2 8 8 C 1.36933 * 119.99804 * 154.78917 * 7 5 4 9 9 H 1.07998 * 120.00273 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99759 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99941 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 120.00165 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46865 * 90.00085 * 12 10 8 14 14 H 1.48497 * 109.46877 * 210.00199 * 12 10 8 15 15 H 1.48505 * 109.46829 * 330.00158 * 12 10 8 16 16 C 1.53040 * 109.65796 * 61.15598 * 5 4 2 17 17 C 1.53191 * 109.31005 * 298.69556 * 16 5 4 18 18 N 1.46929 * 108.77616 * 54.64166 * 17 16 5 19 19 C 1.34770 * 120.63199 * 126.36699 * 18 17 16 20 20 O 1.21286 * 119.99667 * 185.05380 * 19 18 17 21 21 C 1.50697 * 120.00187 * 5.04851 * 19 18 17 22 22 C 1.53874 * 113.60087 * 277.58122 * 21 19 18 23 23 C 1.53308 * 86.94288 * 220.33750 * 22 21 19 24 24 C 1.53324 * 87.55757 * 25.18093 * 23 22 21 25 25 C 1.52831 * 113.64280 * 139.95324 * 23 22 21 26 26 C 1.53263 * 108.87879 * 184.13447 * 25 23 22 27 27 O 1.42893 * 109.33465 * 304.68842 * 26 25 23 28 28 C 1.42901 * 114.35674 * 62.98983 * 27 26 25 29 29 C 1.52832 * 113.64024 * 270.40541 * 23 22 21 30 30 H 1.08997 * 109.47839 * 304.03345 * 1 2 3 31 31 H 1.09003 * 109.47560 * 184.03059 * 1 2 3 32 32 H 1.09007 * 109.47234 * 64.03408 * 1 2 3 33 33 H 1.08996 * 109.50040 * 305.52651 * 4 2 1 34 34 H 1.08998 * 109.49821 * 65.63140 * 4 2 1 35 35 H 0.97003 * 119.99950 * 334.78352 * 7 5 4 36 36 H 0.96996 * 119.99798 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49317 * 178.74778 * 16 5 4 38 38 H 1.08994 * 109.49669 * 58.65409 * 16 5 4 39 39 H 1.08993 * 109.58781 * 294.84524 * 17 16 5 40 40 H 1.09007 * 109.70011 * 174.49448 * 17 16 5 41 41 H 1.09002 * 112.83945 * 48.84331 * 21 19 18 42 42 H 1.08999 * 113.63571 * 334.85286 * 22 21 19 43 43 H 1.08995 * 113.63213 * 105.82693 * 22 21 19 44 44 H 1.08995 * 113.63759 * 220.30849 * 24 23 22 45 45 H 1.09000 * 113.63413 * 89.32675 * 24 23 22 46 46 H 1.08999 * 109.56439 * 303.95537 * 25 23 22 47 47 H 1.08997 * 109.56848 * 64.31181 * 25 23 22 48 48 H 1.09001 * 109.49570 * 184.72801 * 26 25 23 49 49 H 1.09004 * 109.51747 * 64.66154 * 26 25 23 50 50 H 1.09000 * 109.49337 * 177.05408 * 28 27 26 51 51 H 1.09006 * 109.51856 * 56.98349 * 28 27 26 52 52 H 1.08998 * 109.57497 * 295.68546 * 29 23 22 53 53 H 1.09002 * 109.56356 * 56.04875 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8494 -1.1689 6 1 4.0059 0.1461 -1.0992 7 7 4.0653 -1.5187 -2.3733 8 6 5.3493 -1.3011 -2.7963 9 1 5.9953 -0.6365 -2.2419 10 6 5.8211 -1.9357 -3.9372 11 7 7.0552 -1.7261 -4.3441 12 14 4.7046 -3.0870 -4.8951 13 1 3.9688 -2.3160 -5.9293 14 1 5.5231 -4.1385 -5.5504 15 1 3.7344 -3.7214 -3.9669 16 6 3.9568 -1.6656 0.0658 17 6 3.4650 -0.9452 1.3250 18 7 2.0224 -0.6980 1.1955 19 6 1.1672 -1.1042 2.1546 20 8 -0.0283 -0.9768 1.9947 21 6 1.6964 -1.7167 3.4258 22 6 2.0301 -3.2133 3.2961 23 6 1.4248 -3.3853 4.6940 24 6 0.5937 -2.1269 4.4174 25 6 0.5844 -4.6528 4.8462 26 6 -0.0486 -4.6634 6.2420 27 8 0.9777 -4.5345 7.2279 28 6 1.7019 -3.3041 7.1674 29 6 2.4375 -3.2138 5.8257 30 1 -0.3635 0.5751 0.8516 31 1 -0.3634 -1.0251 0.0722 32 1 -0.3634 0.4500 -0.9240 33 1 1.6030 -1.7237 -1.2934 34 1 1.7661 -0.1642 -2.1370 35 1 3.4853 -2.1160 -2.8711 36 1 7.3850 -2.1698 -5.1412 37 1 5.0412 -1.7694 0.1061 38 1 3.4983 -2.6528 0.0087 39 1 3.9902 0.0038 1.4318 40 1 3.6519 -1.5669 2.2007 41 1 2.4940 -1.1281 3.8790 42 1 1.4685 -3.7198 2.5112 43 1 3.0994 -3.4204 3.2544 44 1 0.5091 -1.4615 5.2765 45 1 -0.3660 -2.3325 3.9432 46 1 -0.2000 -4.6637 4.0895 47 1 1.2211 -5.5294 4.7273 48 1 -0.5817 -5.6022 6.3925 49 1 -0.7461 -3.8306 6.3319 50 1 2.4251 -3.2672 7.9820 51 1 1.0081 -2.4683 7.2588 52 1 3.1878 -4.0022 5.7670 53 1 2.9204 -2.2405 5.7389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044821676.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:54 Heat of formation + Delta-G solvation = -62.155151 kcal Electronic energy + Delta-G solvation = -30869.915655 eV Core-core repulsion = 26934.714198 eV Total energy + Delta-G solvation = -3935.201457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.22580 -40.83192 -38.91047 -37.94980 -36.25721 -34.07244 -33.76529 -32.19227 -31.87049 -31.41925 -28.50120 -26.95055 -26.37770 -25.74637 -24.64922 -24.25201 -23.42884 -22.25121 -21.59629 -20.00929 -19.40560 -19.14934 -18.00190 -17.19154 -16.93209 -16.83234 -16.72183 -16.42840 -16.02566 -15.89092 -15.70763 -15.24027 -15.15243 -14.85327 -14.69000 -14.53710 -14.31491 -14.00363 -13.78859 -13.55777 -13.34231 -13.14903 -13.07944 -12.99766 -12.76733 -12.60472 -12.54596 -12.48474 -12.19889 -12.14594 -12.08213 -12.00424 -11.92042 -11.78879 -11.42703 -11.37587 -11.29800 -10.94661 -10.89480 -10.33887 -9.94014 -9.55272 -9.31354 -8.02039 -5.34787 1.37230 1.39031 1.46266 1.64932 2.02401 2.47796 3.01139 3.29232 3.40841 3.43189 3.50981 3.54083 3.70880 3.74623 3.93150 4.01468 4.06384 4.12906 4.15580 4.23469 4.29265 4.33400 4.40252 4.51128 4.55488 4.57652 4.59310 4.62534 4.73068 4.74724 4.79514 4.80226 4.83157 4.86295 4.92988 4.98245 4.99252 5.04941 5.09222 5.14363 5.14977 5.20359 5.25045 5.39039 5.40019 5.47452 5.52203 5.72364 5.78308 6.22276 6.32301 6.51530 7.07949 7.25913 7.84725 8.02824 9.19372 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.002718 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.762205 B =10298.661691 C =11046.101068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.148 3.852 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.176 3.824 6 H 0.048 0.952 7 N -0.753 5.753 8 C -0.222 4.222 9 H 0.062 0.938 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.256 1.256 16 C -0.141 4.141 17 C 0.117 3.883 18 N -0.604 5.604 19 C 0.520 3.480 20 O -0.567 6.567 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.076 4.076 24 C -0.103 4.103 25 C -0.138 4.138 26 C 0.061 3.939 27 O -0.405 6.405 28 C 0.057 3.943 29 C -0.128 4.128 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.362 0.638 36 H 0.257 0.743 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.054 0.946 50 H 0.105 0.895 51 H 0.056 0.944 52 H 0.074 0.926 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -1.400 24.214 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.166 4.166 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.395 5.395 8 C -0.353 4.353 9 H 0.080 0.920 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.207 1.207 14 H -0.225 1.225 15 H -0.181 1.181 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.337 5.337 19 C 0.309 3.691 20 O -0.447 6.447 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.176 4.176 26 C -0.015 4.015 27 O -0.324 6.324 28 C -0.019 4.019 29 C -0.166 4.166 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.195 0.805 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.117 0.883 49 H 0.072 0.928 50 H 0.123 0.877 51 H 0.075 0.925 52 H 0.093 0.907 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.701 -1.369 24.249 28.390 hybrid contribution -0.083 -0.560 -1.680 1.773 sum -14.784 -1.929 22.569 27.049 Atomic orbital electron populations 1.22021 0.92665 1.02404 1.00622 1.21235 0.95395 0.95445 0.83493 0.90047 1.22204 0.95298 1.00901 0.98210 1.20394 0.92368 0.94816 0.85567 0.93373 1.42852 1.11636 1.55130 1.29911 1.19023 0.88901 1.21154 1.06269 0.91991 1.25426 0.97576 1.02620 0.99845 1.69868 1.17352 1.49142 1.27064 0.85483 0.78608 0.79015 0.79068 1.20719 1.22479 1.18118 1.22408 1.01028 0.99424 0.95279 1.21834 0.78909 1.01331 0.98530 1.48280 1.08078 1.57259 1.20041 1.20979 0.85943 0.76919 0.85211 1.90718 1.16936 1.56780 1.80260 1.22879 1.01519 0.97556 0.93338 1.22886 1.02170 0.92763 0.96985 1.21474 0.96389 0.94911 0.94796 1.22829 0.96896 0.96539 0.97797 1.22091 0.99765 0.97646 0.98061 1.22645 0.89396 1.02495 0.86990 1.87869 1.50204 1.39569 1.54770 1.22749 0.95352 0.86131 0.97703 1.21986 0.97331 1.03798 0.93462 0.91984 0.92964 0.92982 0.92591 0.90623 0.80510 0.93456 0.91821 0.92893 0.90148 0.87418 0.84890 0.91104 0.89373 0.90141 0.90435 0.90893 0.91250 0.88262 0.92757 0.87663 0.92530 0.90741 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 7.59 71.98 0.55 -2.56 16 2 C 0.15 3.77 3.49 44.97 0.16 3.93 16 3 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 4 C -0.13 -3.76 4.85 30.68 0.15 -3.61 16 5 C 0.18 6.16 2.73 45.03 0.12 6.29 16 6 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 7 N -0.75 -33.77 4.92 -322.74 -1.59 -35.36 16 8 C -0.22 -12.22 10.41 84.03 0.87 -11.34 16 9 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 11 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 12 Si 0.95 45.27 27.74 68.60 1.90 47.18 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.26 -11.15 6.52 99.48 0.65 -10.50 16 16 C -0.14 -4.18 5.66 30.67 0.17 -4.01 16 17 C 0.12 2.47 6.28 86.36 0.54 3.02 16 18 N -0.60 -14.15 2.97 -795.03 -2.36 -16.52 16 19 C 0.52 12.18 7.13 87.66 0.63 12.81 16 20 O -0.57 -16.52 11.30 -3.05 -0.03 -16.55 16 21 C -0.13 -2.14 2.38 -10.95 -0.03 -2.16 16 22 C -0.11 -1.73 6.18 30.99 0.19 -1.54 16 23 C -0.08 -1.03 0.77 -52.08 -0.04 -1.07 16 24 C -0.10 -1.60 6.36 31.00 0.20 -1.41 16 25 C -0.14 -1.99 5.33 30.63 0.16 -1.83 16 26 C 0.06 0.85 6.78 72.07 0.49 1.34 16 27 O -0.40 -6.83 10.72 -148.98 -1.60 -8.42 16 28 C 0.06 0.68 6.78 72.07 0.49 1.16 16 29 C -0.13 -1.43 5.23 30.63 0.16 -1.27 16 30 H 0.06 1.69 6.76 -2.39 -0.02 1.67 16 31 H 0.05 1.54 6.73 -2.39 -0.02 1.52 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.36 15.99 5.66 -92.71 -0.52 15.47 16 36 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 1.72 5.28 -2.38 -0.01 1.71 16 41 H 0.13 1.57 7.22 -2.39 -0.02 1.55 16 42 H 0.07 1.37 8.05 -2.39 -0.02 1.35 16 43 H 0.09 1.22 7.72 -2.39 -0.02 1.20 16 44 H 0.08 1.07 7.63 -2.39 -0.02 1.06 16 45 H 0.08 1.54 7.31 -2.39 -0.02 1.52 16 46 H 0.07 1.08 8.04 -2.39 -0.02 1.07 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.05 0.71 8.12 -2.38 -0.02 0.69 16 50 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.60 7.68 -2.38 -0.02 0.58 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 53 H 0.09 0.75 7.35 -2.39 -0.02 0.74 16 Total: -1.00 -69.23 393.37 2.20 -67.03 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.30 Total: 29.93 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.28 Total: -5.44 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.65 Total: -113.72 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.63 Total: -24.97 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Total: -69.23 2.20 -67.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044821676.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.874 kcal (2) G-P(sol) polarization free energy of solvation -69.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds