Wall clock time and date at job start Tue Mar 31 2020 20:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.58464 * 2 1 4 4 C 1.53196 * 109.58929 * 120.42091 * 2 1 3 5 5 C 1.53041 * 109.31477 * 174.42338 * 4 2 1 6 6 H 1.08999 * 109.44798 * 58.65523 * 5 4 2 7 7 N 1.46498 * 109.45484 * 178.61739 * 5 4 2 8 8 C 1.36943 * 119.99752 * 205.06849 * 7 5 4 9 9 H 1.08005 * 120.00112 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99913 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00504 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99849 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47100 * 89.99845 * 12 10 8 14 14 H 1.48500 * 109.47139 * 210.00117 * 12 10 8 15 15 H 1.48498 * 109.46986 * 329.99866 * 12 10 8 16 16 C 1.53036 * 109.53802 * 298.63806 * 5 4 2 17 17 C 1.53189 * 109.31449 * 61.36847 * 16 5 4 18 18 N 1.46924 * 109.59264 * 239.71436 * 2 1 3 19 19 C 1.34781 * 120.62492 * 6.62632 * 18 2 1 20 20 O 1.21278 * 120.00257 * 5.78178 * 19 18 2 21 21 C 1.50703 * 119.99385 * 185.78382 * 19 18 2 22 22 C 1.53865 * 113.60317 * 279.17476 * 21 19 18 23 23 C 1.53479 * 86.88728 * 220.37306 * 22 21 19 24 24 C 1.53321 * 87.58227 * 25.10708 * 23 22 21 25 25 C 1.52825 * 113.69806 * 139.90507 * 23 22 21 26 26 C 1.53267 * 108.87736 * 184.07753 * 25 23 22 27 27 O 1.42897 * 109.32717 * 304.68494 * 26 25 23 28 28 C 1.42902 * 114.36041 * 63.00027 * 27 26 25 29 29 C 1.52834 * 113.56116 * 270.33831 * 23 22 21 30 30 H 1.08997 * 109.46531 * 174.46270 * 1 2 3 31 31 H 1.08999 * 109.47006 * 54.46280 * 1 2 3 32 32 H 1.08991 * 109.47381 * 294.46375 * 1 2 3 33 33 H 1.08998 * 109.49921 * 294.37961 * 4 2 1 34 34 H 1.09008 * 109.49093 * 54.47229 * 4 2 1 35 35 H 0.96999 * 120.00448 * 25.07140 * 7 5 4 36 36 H 0.96994 * 120.00394 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49867 * 301.41266 * 16 5 4 38 38 H 1.09000 * 109.49501 * 181.31785 * 16 5 4 39 39 H 1.09003 * 109.58431 * 185.57862 * 17 16 5 40 40 H 1.08998 * 109.59045 * 65.14636 * 17 16 5 41 41 H 1.09001 * 112.84150 * 50.33906 * 21 19 18 42 42 H 1.09003 * 113.63539 * 334.85107 * 22 21 19 43 43 H 1.09001 * 113.63822 * 105.82517 * 22 21 19 44 44 H 1.08999 * 113.63733 * 220.37417 * 24 23 22 45 45 H 1.08997 * 113.71412 * 89.41835 * 24 23 22 46 46 H 1.09000 * 109.56744 * 303.88646 * 25 23 22 47 47 H 1.08995 * 109.57099 * 64.25342 * 25 23 22 48 48 H 1.08996 * 109.49422 * 184.73142 * 26 25 23 49 49 H 1.09000 * 109.52344 * 64.66016 * 26 25 23 50 50 H 1.08996 * 109.49403 * 177.05412 * 28 27 26 51 51 H 1.08997 * 109.52004 * 56.97354 * 28 27 26 52 52 H 1.08997 * 109.57279 * 295.67803 * 29 23 22 53 53 H 1.09005 * 109.57077 * 55.91867 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7308 1.2446 5 6 3.5675 -0.8493 1.1692 6 1 4.0059 0.1462 1.0995 7 7 4.0651 -1.5185 2.3736 8 6 5.3492 -1.3009 2.7968 9 1 5.9950 -0.6356 2.2429 10 6 5.8209 -1.9353 3.9378 11 7 5.0342 -2.7465 4.6127 12 14 7.5728 -1.6390 4.5146 13 1 7.5980 -0.4839 5.4476 14 1 8.0758 -2.8497 5.2120 15 1 8.4372 -1.3478 3.3428 16 6 3.9570 -1.6655 -0.0654 17 6 3.4652 -0.9452 -1.3248 18 7 2.0226 -0.6981 -1.1953 19 6 1.1675 -1.1035 -2.1549 20 8 -0.0054 -0.8023 -2.0888 21 6 1.6690 -1.9313 -3.3101 22 6 2.3397 -1.1004 -4.4180 23 6 1.6282 -2.0183 -5.4214 24 6 0.5775 -2.2818 -4.3363 25 6 1.0765 -1.2830 -6.6423 26 6 0.3050 -2.2794 -7.5146 27 8 1.1572 -3.3782 -7.8440 28 6 1.5939 -4.1434 -6.7190 29 6 2.4409 -3.2560 -5.8000 30 1 -0.3632 -1.0229 -0.0992 31 1 -0.3633 0.5973 -0.8362 32 1 -0.3634 0.4255 0.9353 33 1 1.7660 -0.1694 2.1367 34 1 1.6030 -1.7269 1.2893 35 1 3.4851 -2.1157 2.8714 36 1 5.3639 -3.1901 5.4097 37 1 3.4984 -2.6528 -0.0083 38 1 5.0413 -1.7693 -0.1056 39 1 3.6520 -1.5691 -2.1989 40 1 3.9904 0.0039 -1.4316 41 1 2.2593 -2.7900 -2.9905 42 1 1.9993 -0.0656 -4.4549 43 1 3.4258 -1.1911 -4.4354 44 1 0.2497 -3.3202 -4.2884 45 1 -0.2529 -1.5758 -4.3495 46 1 0.4062 -0.4873 -6.3171 47 1 1.9003 -0.8575 -7.2153 48 1 -0.0214 -1.7852 -8.4295 49 1 -0.5647 -2.6446 -6.9683 50 1 2.1926 -4.9868 -7.0630 51 1 0.7271 -4.5122 -6.1707 52 1 3.3483 -2.9515 -6.3214 53 1 2.7057 -3.8087 -4.8986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044821677.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:58 Heat of formation + Delta-G solvation = -66.069889 kcal Electronic energy + Delta-G solvation = -30682.457150 eV Core-core repulsion = 26747.085938 eV Total energy + Delta-G solvation = -3935.371212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.20456 -40.81144 -38.86612 -37.91917 -36.14940 -34.03041 -33.66890 -32.17156 -31.82931 -30.93629 -28.42141 -26.94424 -26.39089 -25.85496 -24.65254 -24.38646 -23.43690 -22.28426 -21.36964 -19.88934 -19.17864 -19.07492 -17.92441 -17.21275 -16.94111 -16.92515 -16.72021 -16.48071 -15.88530 -15.69514 -15.48369 -15.44496 -15.06717 -14.94386 -14.60927 -14.52684 -14.28187 -13.97804 -13.53919 -13.39470 -13.32933 -13.12186 -13.04764 -12.86619 -12.67239 -12.61372 -12.52881 -12.47131 -12.19256 -12.17024 -12.11952 -11.96587 -11.91887 -11.70242 -11.42711 -11.36280 -11.28363 -10.89407 -10.88500 -10.33484 -9.96406 -9.54554 -9.00861 -7.93133 -5.22001 1.48317 1.49556 1.57734 1.65130 2.04582 2.56774 3.01144 3.39371 3.41759 3.47491 3.54819 3.69167 3.74947 3.76101 3.96493 4.06068 4.09248 4.14163 4.17853 4.25127 4.29475 4.34880 4.41758 4.51806 4.57603 4.58141 4.62621 4.71382 4.74495 4.77678 4.80811 4.82188 4.83746 4.85756 4.93990 4.99681 5.02063 5.07793 5.11259 5.13792 5.16856 5.21187 5.27288 5.40140 5.41275 5.50135 5.51480 5.55324 5.72891 6.28412 6.32166 6.52847 7.26326 7.34401 8.10077 8.33066 9.30543 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.002501 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.940523 B =11192.513708 C =12201.857752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.150 3.850 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.174 3.826 6 H 0.047 0.953 7 N -0.738 5.738 8 C -0.233 4.233 9 H 0.079 0.921 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.290 1.290 14 H -0.299 1.299 15 H -0.266 1.266 16 C -0.141 4.141 17 C 0.118 3.882 18 N -0.604 5.604 19 C 0.520 3.480 20 O -0.568 6.568 21 C -0.136 4.136 22 C -0.103 4.103 23 C -0.075 4.075 24 C -0.106 4.106 25 C -0.135 4.135 26 C 0.059 3.941 27 O -0.404 6.404 28 C 0.057 3.943 29 C -0.129 4.129 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.050 0.950 50 H 0.104 0.896 51 H 0.051 0.949 52 H 0.079 0.921 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 2.550 -25.401 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.046 3.954 3 H 0.099 0.901 4 C -0.161 4.161 5 C 0.065 3.935 6 H 0.065 0.935 7 N -0.377 5.377 8 C -0.365 4.365 9 H 0.097 0.903 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.217 1.217 14 H -0.226 1.226 15 H -0.191 1.191 16 C -0.181 4.181 17 C -0.005 4.005 18 N -0.336 5.336 19 C 0.310 3.690 20 O -0.448 6.448 21 C -0.157 4.157 22 C -0.141 4.141 23 C -0.076 4.076 24 C -0.144 4.144 25 C -0.172 4.172 26 C -0.018 4.018 27 O -0.323 6.323 28 C -0.019 4.019 29 C -0.167 4.167 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.120 0.880 49 H 0.068 0.932 50 H 0.122 0.878 51 H 0.070 0.930 52 H 0.098 0.902 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.724 2.751 -25.539 26.823 hybrid contribution 0.567 -0.317 1.692 1.813 sum -7.157 2.434 -23.847 25.016 Atomic orbital electron populations 1.22019 0.92895 1.02121 1.00942 1.21199 0.95264 0.95435 0.83455 0.90119 1.22139 0.95976 1.00335 0.97692 1.20402 0.92081 0.94710 0.86271 0.93499 1.42667 1.12186 1.54398 1.28496 1.19624 0.90082 1.20790 1.06011 0.90275 1.25554 1.02035 1.00503 0.98979 1.69824 1.37249 1.35128 1.20162 0.85178 0.80271 0.76351 0.78212 1.21698 1.22604 1.19055 1.22451 1.01050 0.99233 0.95408 1.21861 0.78824 1.01363 0.98421 1.48294 1.08200 1.57400 1.19753 1.20973 0.85391 0.79423 0.83246 1.90695 1.18527 1.58143 1.77465 1.22860 1.00961 0.99776 0.92112 1.22925 1.00875 0.98046 0.92257 1.21492 0.96285 0.96203 0.93578 1.22846 0.96162 1.02039 0.93341 1.22075 1.00834 0.98262 0.96070 1.22680 0.91952 0.87073 1.00074 1.87866 1.67826 1.43580 1.33019 1.22716 0.97941 0.93798 0.87489 1.21982 0.98707 0.95355 1.00630 0.93771 0.91141 0.93005 0.91457 0.93274 0.79916 0.94201 0.93562 0.91540 0.87430 0.89957 0.85980 0.90020 0.88823 0.91031 0.90127 0.90520 0.90664 0.88006 0.93160 0.87799 0.93022 0.90229 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 7.61 71.98 0.55 -2.91 16 2 C 0.15 4.15 3.49 44.98 0.16 4.31 16 3 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 4 C -0.12 -4.03 4.84 30.67 0.15 -3.88 16 5 C 0.17 6.43 2.73 45.02 0.12 6.55 16 6 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 7 N -0.74 -36.15 5.12 -322.82 -1.65 -37.80 16 8 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 11 N -0.97 -59.21 13.06 21.65 0.28 -58.92 16 12 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 C -0.14 -4.35 5.66 30.67 0.17 -4.18 16 17 C 0.12 2.60 6.27 86.36 0.54 3.14 16 18 N -0.60 -15.12 2.97 -795.00 -2.36 -17.48 16 19 C 0.52 13.00 7.03 87.66 0.62 13.62 16 20 O -0.57 -17.42 11.47 -3.02 -0.03 -17.46 16 21 C -0.14 -2.41 2.39 -10.96 -0.03 -2.43 16 22 C -0.10 -1.42 6.25 31.05 0.19 -1.23 16 23 C -0.08 -1.00 0.77 -52.03 -0.04 -1.04 16 24 C -0.11 -1.80 6.35 30.99 0.20 -1.60 16 25 C -0.13 -1.73 5.34 30.63 0.16 -1.57 16 26 C 0.06 0.79 6.78 72.07 0.49 1.28 16 27 O -0.40 -6.86 10.72 -148.98 -1.60 -8.46 16 28 C 0.06 0.75 6.78 72.07 0.49 1.23 16 29 C -0.13 -1.53 5.23 30.63 0.16 -1.37 16 30 H 0.04 1.39 6.96 -2.39 -0.02 1.38 16 31 H 0.07 2.06 6.54 -2.39 -0.02 2.05 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.11 1.78 5.39 -2.39 -0.01 1.77 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 1.93 7.07 -2.39 -0.02 1.92 16 42 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 43 H 0.09 1.02 7.87 -2.39 -0.02 1.00 16 44 H 0.07 1.17 7.63 -2.39 -0.02 1.16 16 45 H 0.08 1.65 7.33 -2.39 -0.02 1.63 16 46 H 0.08 0.98 8.04 -2.39 -0.02 0.96 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 50 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 0.66 7.68 -2.39 -0.02 0.64 16 52 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.08 0.89 7.35 -2.38 -0.02 0.88 16 Total: -1.00 -66.75 396.77 2.06 -64.69 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.16 Total: 33.89 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.23 Total: -5.72 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.73 Total: -114.21 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.63 Total: -25.91 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.75 2.06 -64.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044821677.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.381 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds