Wall clock time and date at job start Tue Mar 31 2020 21:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.45405 * 2 1 4 4 C 1.54510 * 110.51257 * 237.24501 * 2 1 3 5 5 C 1.54478 * 104.06093 * 241.35735 * 4 2 1 6 6 O 1.44423 * 104.80519 * 23.97694 * 5 4 2 7 7 C 1.44419 * 105.27691 * 319.48878 * 6 5 4 8 8 H 1.09005 * 110.46645 * 281.63656 * 7 6 5 9 9 C 1.50698 * 110.37637 * 159.34223 * 7 6 5 10 10 O 1.21283 * 119.99492 * 351.04866 * 9 7 6 11 11 N 1.35074 * 120.00333 * 171.04370 * 9 7 6 12 12 C 1.44470 * 118.34928 * 355.25393 * 11 9 7 13 13 C 1.54700 * 109.59975 * 269.22740 * 12 11 9 14 14 C 1.47145 * 110.33333 * 289.79107 * 13 12 11 15 15 C 1.52333 * 114.80567 * 64.69943 * 14 13 12 16 16 C 1.50053 * 111.48854 * 274.43383 * 15 14 13 17 17 C 1.53749 * 112.62106 * 320.79960 * 16 15 14 18 18 C 1.54467 * 105.32608 * 223.34907 * 17 16 15 19 19 N 1.47995 * 106.31722 * 352.72921 * 18 17 16 20 20 C 1.37147 * 127.63205 * 210.84422 * 19 18 17 21 21 H 1.08006 * 120.00112 * 179.79121 * 20 19 18 22 22 C 1.38814 * 120.00325 * 359.78931 * 20 19 18 23 23 N 1.31615 * 119.99896 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47062 * 59.99889 * 24 22 20 26 26 H 1.48498 * 109.46575 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47240 * 299.99738 * 24 22 20 28 28 C 1.48291 * 104.88817 * 30.66836 * 19 18 17 29 29 C 1.47272 * 118.37569 * 174.67694 * 11 9 7 30 30 H 1.08999 * 109.47242 * 297.39867 * 1 2 3 31 31 H 1.08994 * 109.46955 * 57.39392 * 1 2 3 32 32 H 1.08996 * 109.47213 * 177.39760 * 1 2 3 33 33 H 1.09000 * 110.50684 * 0.02562 * 4 2 1 34 34 H 1.08992 * 110.50947 * 122.57181 * 4 2 1 35 35 H 1.09004 * 110.37239 * 142.81137 * 5 4 2 36 36 H 1.09000 * 110.36808 * 265.14478 * 5 4 2 37 37 H 1.09013 * 109.45276 * 29.29791 * 12 11 9 38 38 H 1.08988 * 109.49684 * 149.11505 * 12 11 9 39 39 H 1.08858 * 109.59541 * 50.23058 * 13 12 11 40 40 H 1.09073 * 109.16406 * 169.93074 * 13 12 11 41 41 H 1.09519 * 107.75710 * 185.23762 * 14 13 12 42 42 H 1.08635 * 108.34784 * 301.28112 * 14 13 12 43 43 H 1.09558 * 108.94028 * 154.00518 * 15 14 13 44 44 H 1.09302 * 109.52592 * 36.01296 * 15 14 13 45 45 H 1.09135 * 110.67134 * 341.41423 * 17 16 15 46 46 H 1.08918 * 110.55975 * 104.14976 * 17 16 15 47 47 H 1.09119 * 110.16224 * 112.15210 * 18 17 16 48 48 H 1.09152 * 110.16269 * 233.29404 * 18 17 16 49 49 H 0.97001 * 120.00246 * 180.02562 * 23 22 20 50 50 H 1.08567 * 110.89785 * 200.08034 * 28 19 18 51 51 H 1.08663 * 110.64052 * 76.09578 * 28 19 18 52 52 H 1.09319 * 108.79209 * 12.13754 * 29 11 9 53 53 H 1.09282 * 108.79305 * 254.77953 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0714 -0.7830 -1.2170 5 6 2.8757 -1.9430 -0.5894 6 8 2.3069 -2.1167 0.7267 7 6 2.0713 -0.7796 1.2189 8 1 3.0013 -0.3339 1.5718 9 6 1.0478 -0.8004 2.3249 10 8 0.4357 -1.8194 2.5654 11 7 0.8124 0.3157 3.0483 12 6 1.6334 1.4786 2.8022 13 6 2.8653 1.4515 3.7376 14 6 2.4565 1.7008 5.1289 15 6 1.5575 0.6295 5.7327 16 6 0.1139 0.8746 5.4049 17 6 -0.2598 2.3650 5.4578 18 6 -1.6192 2.4194 6.1892 19 7 -2.0553 1.0156 6.3611 20 6 -3.3397 0.5361 6.3964 21 1 -3.5180 -0.5213 6.5256 22 6 -4.4106 1.4096 6.2660 23 7 -4.1934 2.6982 6.1091 24 14 -6.1600 0.7564 6.3148 25 1 -6.4015 0.0846 7.6169 26 1 -7.1137 1.8834 6.1542 27 1 -6.3556 -0.2179 5.2113 28 6 -0.7983 0.2384 6.4829 29 6 -0.2768 0.2906 4.0393 30 1 -0.3634 0.4729 0.9124 31 1 -0.3633 0.5537 -0.8657 32 1 -0.3633 -1.0266 -0.0467 33 1 1.2491 -1.1696 -1.8189 34 1 2.7200 -0.1488 -1.8213 35 1 2.7535 -2.8518 -1.1787 36 1 3.9301 -1.6769 -0.5151 37 1 1.9653 1.4756 1.7639 38 1 1.0524 2.3809 2.9924 39 1 3.3510 0.4794 3.6734 40 1 3.5673 2.2267 3.4278 41 1 3.3648 1.7662 5.7373 42 1 1.9636 2.6679 5.1724 43 1 1.6830 0.6319 6.8210 44 1 1.8582 -0.3528 5.3592 45 1 0.4807 2.9278 6.0288 46 1 -0.3544 2.7716 4.4518 47 1 -1.5041 2.9005 7.1618 48 1 -2.3469 2.9701 5.5903 49 1 -4.9417 3.3087 6.0184 50 1 -0.9690 -0.8110 6.2631 51 1 -0.3614 0.3687 7.4693 52 1 -0.6011 -0.7439 4.1800 53 1 -1.1236 0.8584 3.6462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045967887.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:57 Heat of formation + Delta-G solvation = -64.775655 kcal Electronic energy + Delta-G solvation = -32270.590773 eV Core-core repulsion = 28335.275683 eV Total energy + Delta-G solvation = -3935.315090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.14095 -40.63700 -39.16281 -37.56580 -35.35969 -34.46473 -34.23997 -32.37959 -30.98639 -30.46813 -28.45969 -28.19643 -26.95592 -26.31969 -24.74010 -23.66859 -22.71201 -22.11757 -21.33395 -19.97440 -19.65218 -18.56860 -18.19417 -17.84662 -17.43696 -16.81727 -16.74171 -16.42323 -15.92892 -15.66619 -15.33568 -15.23070 -14.85481 -14.70173 -14.53442 -14.26982 -14.11873 -14.01795 -13.80089 -13.61697 -13.57001 -13.20144 -13.00081 -12.84211 -12.74205 -12.73301 -12.37719 -12.28382 -12.15068 -12.07568 -11.92503 -11.79787 -11.76334 -11.50920 -11.41787 -11.28087 -11.14082 -11.10267 -10.88714 -10.76260 -10.54108 -9.60014 -8.89520 -7.77069 -5.21807 1.43449 1.46228 1.51564 1.52319 1.80889 2.47605 3.01301 3.30801 3.35371 3.49024 3.60317 3.72343 3.75603 3.80674 3.92459 4.03474 4.05511 4.15402 4.19755 4.22121 4.29085 4.42556 4.47389 4.56324 4.59551 4.61611 4.66191 4.69879 4.71711 4.84841 4.87389 4.88384 4.92064 4.96661 4.97994 5.03103 5.10268 5.13768 5.20380 5.22364 5.23934 5.25549 5.37121 5.40920 5.45315 5.61949 5.62473 5.72079 5.79954 5.83442 6.34452 6.43325 7.08728 7.16334 7.73983 8.45986 9.23648 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.003725 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.022439 B = 7514.848657 C = 8563.631968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 H 0.130 0.870 4 C -0.143 4.143 5 C 0.034 3.966 6 O -0.388 6.388 7 C 0.062 3.938 8 H 0.124 0.876 9 C 0.511 3.489 10 O -0.583 6.583 11 N -0.589 5.589 12 C 0.089 3.911 13 C -0.129 4.129 14 C -0.121 4.121 15 C -0.089 4.089 16 C -0.061 4.061 17 C -0.109 4.109 18 C 0.135 3.865 19 N -0.620 5.620 20 C -0.234 4.234 21 H 0.072 0.928 22 C -0.061 4.061 23 N -0.944 5.944 24 Si 0.974 3.026 25 H -0.280 1.280 26 H -0.288 1.288 27 H -0.283 1.283 28 C 0.132 3.868 29 C 0.151 3.849 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.066 0.934 47 H -0.015 1.015 48 H 0.081 0.919 49 H 0.248 0.752 50 H 0.035 0.965 51 H 0.035 0.965 52 H 0.048 0.952 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.839 1.490 -14.840 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 H 0.148 0.852 4 C -0.180 4.180 5 C -0.042 4.042 6 O -0.307 6.307 7 C 0.002 3.998 8 H 0.141 0.859 9 C 0.300 3.700 10 O -0.462 6.462 11 N -0.321 5.321 12 C -0.033 4.033 13 C -0.167 4.167 14 C -0.158 4.158 15 C -0.127 4.127 16 C -0.063 4.063 17 C -0.147 4.147 18 C 0.010 3.990 19 N -0.345 5.345 20 C -0.363 4.363 21 H 0.090 0.910 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.802 3.198 25 H -0.206 1.206 26 H -0.214 1.214 27 H -0.209 1.209 28 C 0.006 3.994 29 C 0.028 3.972 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.003 0.997 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.053 0.947 52 H 0.067 0.933 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 21.208 0.838 -14.589 25.755 hybrid contribution -1.801 -0.545 0.610 1.978 sum 19.407 0.293 -13.980 23.920 Atomic orbital electron populations 1.21940 0.95513 1.01067 1.02466 1.22606 0.95868 1.01452 0.92789 0.85193 1.23060 1.00874 0.97057 0.97020 1.23761 0.98075 1.00173 0.82224 1.89248 1.83566 1.24904 1.33020 1.23168 0.97608 0.85528 0.93526 0.85912 1.21051 0.83414 0.82739 0.82791 1.90683 1.52123 1.33692 1.69738 1.47603 1.34451 1.13065 1.36990 1.22129 0.92250 0.87685 1.01201 1.21286 0.97194 1.03326 0.94911 1.20418 0.99488 0.98927 0.96999 1.20770 0.91941 0.99287 1.00747 1.21153 0.95833 0.96028 0.93308 1.22653 0.96958 0.94574 1.00497 1.21940 0.94648 0.86108 0.96296 1.45227 1.00361 1.04109 1.84783 1.19371 0.82460 0.92646 1.41814 0.90969 1.25490 1.01287 0.95779 1.02815 1.69897 1.29705 1.02092 1.57637 0.85226 0.79809 0.76807 0.77950 1.20604 1.21412 1.20918 1.22097 0.86870 0.94470 0.95990 1.21388 0.87360 1.00281 0.88135 0.93874 0.89800 0.94968 0.90820 0.86565 0.88403 0.89432 0.87524 0.89643 0.92297 0.87151 0.90915 0.90748 0.91832 0.93562 0.89712 0.91550 0.99684 0.90123 0.94267 0.94624 0.94738 0.93321 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.10 71.98 0.58 -2.86 16 2 C -0.11 -1.70 2.87 -9.78 -0.03 -1.73 16 3 H 0.13 1.09 6.80 -2.38 -0.02 1.07 16 4 C -0.14 -1.67 6.74 31.61 0.21 -1.46 16 5 C 0.03 0.50 7.63 72.48 0.55 1.05 16 6 O -0.39 -10.37 10.93 -130.78 -1.43 -11.80 16 7 C 0.06 1.37 2.65 30.35 0.08 1.45 16 8 H 0.12 1.86 6.89 -2.38 -0.02 1.84 16 9 C 0.51 16.26 5.01 87.61 0.44 16.70 16 10 O -0.58 -25.57 15.77 15.16 0.24 -25.33 16 11 N -0.59 -16.68 1.68 -819.10 -1.38 -18.06 16 12 C 0.09 1.60 5.10 87.34 0.45 2.05 16 13 C -0.13 -1.87 5.56 29.35 0.16 -1.71 16 14 C -0.12 -2.28 4.84 28.55 0.14 -2.14 16 15 C -0.09 -2.42 4.53 29.42 0.13 -2.29 16 16 C -0.06 -2.10 0.55 -52.04 -0.03 -2.13 16 17 C -0.11 -3.80 4.60 31.34 0.14 -3.66 16 18 C 0.14 6.61 6.23 86.59 0.54 7.15 16 19 N -0.62 -32.82 3.28 -687.48 -2.26 -35.08 16 20 C -0.23 -13.68 10.41 84.00 0.87 -12.80 16 21 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 22 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 23 N -0.94 -56.60 10.20 21.65 0.22 -56.38 16 24 Si 0.97 47.31 29.55 68.60 2.03 49.33 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 28 C 0.13 5.75 6.05 86.68 0.52 6.27 16 29 C 0.15 5.67 4.99 86.42 0.43 6.10 16 30 H 0.04 1.16 6.53 -2.39 -0.02 1.15 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.98 7.73 -2.39 -0.02 0.96 16 34 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 1.24 4.43 -2.38 -0.01 1.23 16 38 H 0.09 1.58 6.75 -2.39 -0.02 1.56 16 39 H 0.06 0.92 7.73 -2.46 -0.02 0.90 16 40 H 0.11 0.86 8.15 -2.35 -0.02 0.85 16 41 H 0.07 1.13 8.17 -2.11 -0.02 1.12 16 42 H 0.07 1.41 5.45 -2.58 -0.01 1.39 16 43 H 0.06 1.70 7.61 -2.09 -0.02 1.68 16 44 H 0.05 1.36 7.81 -2.23 -0.02 1.35 16 45 H 0.08 2.51 6.43 -2.32 -0.01 2.49 16 46 H 0.07 2.19 6.45 -2.43 -0.02 2.17 16 47 H -0.01 -0.77 8.15 -2.32 -0.02 -0.79 16 48 H 0.08 4.50 5.62 -2.31 -0.01 4.49 16 49 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 50 H 0.04 1.62 7.53 -2.62 -0.02 1.60 16 51 H 0.03 1.46 7.64 -2.56 -0.02 1.44 16 52 H 0.05 2.20 6.12 -2.22 -0.01 2.19 16 53 H 0.04 1.73 7.68 -2.24 -0.02 1.71 16 Total: -1.00 -79.60 380.62 3.99 -75.61 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.90 Total: 14.79 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.67 Total: 6.91 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.42 Total: -109.52 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.19 Total: -37.13 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -79.60 3.99 -75.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045967887.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.835 kcal (2) G-P(sol) polarization free energy of solvation -79.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds