Wall clock time and date at job start Tue Mar 31 2020 20:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.41539 * 2 1 4 4 C 1.54478 * 110.37309 * 237.69009 * 2 1 3 5 5 C 1.54509 * 104.18654 * 217.26081 * 4 2 1 6 6 C 1.54478 * 104.05888 * 359.92779 * 5 4 2 7 7 H 1.09004 * 110.37618 * 265.15162 * 6 5 4 8 8 C 1.50703 * 110.37157 * 142.92304 * 6 5 4 9 9 O 1.21277 * 120.00637 * 248.41349 * 8 6 5 10 10 N 1.35009 * 119.99503 * 68.40985 * 8 6 5 11 11 C 1.50488 * 114.76580 * 184.43672 * 10 8 6 12 12 C 1.58251 * 106.08478 * 266.67202 * 11 10 8 13 13 C 1.46775 * 110.01377 * 292.26098 * 12 11 10 14 14 C 1.54572 * 114.47787 * 68.49346 * 13 12 11 15 15 C 1.55139 * 109.25484 * 271.46516 * 14 13 12 16 16 C 1.49919 * 106.58207 * 205.80982 * 15 14 13 17 17 C 1.57355 * 103.26361 * 110.82048 * 16 15 14 18 18 N 1.46546 * 100.75614 * 30.63512 * 17 16 15 19 19 C 1.42243 * 123.11537 * 140.22437 * 18 17 16 20 20 H 1.07999 * 119.99998 * 342.23907 * 19 18 17 21 21 C 1.38810 * 119.99829 * 162.24316 * 19 18 17 22 22 N 1.31619 * 120.00397 * 169.59297 * 21 19 18 23 23 Si 1.86799 * 119.99940 * 349.58554 * 21 19 18 24 24 H 1.48509 * 109.46972 * 84.61137 * 23 21 19 25 25 H 1.48506 * 109.47392 * 204.60598 * 23 21 19 26 26 H 1.48496 * 109.47462 * 324.61038 * 23 21 19 27 27 C 1.39813 * 105.53213 * 316.06814 * 18 17 16 28 28 C 1.43996 * 120.16970 * 0.70533 * 10 8 6 29 29 O 1.44422 * 104.80665 * 23.98458 * 6 5 4 30 30 H 1.09003 * 109.46932 * 182.30843 * 1 2 3 31 31 H 1.09004 * 109.47178 * 302.30522 * 1 2 3 32 32 H 1.08998 * 109.47413 * 62.31491 * 1 2 3 33 33 H 1.09000 * 110.51266 * 98.53720 * 4 2 1 34 34 H 1.09009 * 110.50979 * 335.97346 * 4 2 1 35 35 H 1.08995 * 110.51622 * 118.57248 * 5 4 2 36 36 H 1.08998 * 110.50820 * 241.29038 * 5 4 2 37 37 H 1.08847 * 111.32899 * 30.33178 * 11 10 8 38 38 H 1.08671 * 106.68588 * 148.53687 * 11 10 8 39 39 H 1.11231 * 106.96204 * 55.35776 * 12 11 10 40 40 H 1.13571 * 105.63861 * 168.87235 * 12 11 10 41 41 H 1.07654 * 103.50808 * 185.53021 * 13 12 11 42 42 H 1.06064 * 108.91637 * 302.19747 * 13 12 11 43 43 H 1.09783 * 108.32262 * 33.07856 * 14 13 12 44 44 H 1.03449 * 106.82625 * 148.80503 * 14 13 12 45 45 H 1.08242 * 109.58468 * 229.08643 * 16 15 14 46 46 H 1.05882 * 110.89085 * 350.74997 * 16 15 14 47 47 H 1.06271 * 111.91474 * 265.58015 * 17 16 15 48 48 H 1.14600 * 109.46387 * 147.71324 * 17 16 15 49 49 H 0.96993 * 120.00192 * 179.97438 * 22 21 19 50 50 H 1.10634 * 110.12762 * 280.65763 * 27 18 17 51 51 H 1.10868 * 112.96133 * 158.48776 * 27 18 17 52 52 H 1.08662 * 106.57260 * 258.74332 * 28 10 8 53 53 H 1.12660 * 107.29749 * 9.29440 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3173 -1.5084 -0.6884 6 6 3.3901 -1.0909 0.7971 7 1 4.0570 -0.2374 0.9192 8 6 3.8575 -2.2462 1.6444 9 8 3.0943 -2.7729 2.4261 10 7 5.1260 -2.6949 1.5333 11 6 5.4369 -3.9165 2.3553 12 6 6.0256 -3.3853 3.7248 13 6 7.3329 -2.7572 3.4997 14 6 7.2788 -1.4337 2.7030 15 6 7.3673 -1.7459 1.1859 16 6 7.9416 -0.5258 0.5308 17 6 9.3703 -1.0005 0.0729 18 7 9.1183 -2.4219 -0.1795 19 6 9.6822 -3.1280 -1.2781 20 1 10.0833 -2.5844 -2.1207 21 6 9.7167 -4.5156 -1.2672 22 7 10.0456 -5.1744 -2.3581 23 14 9.2966 -5.4481 0.2960 24 1 7.8243 -5.6176 0.3906 25 1 9.9476 -6.7825 0.2666 26 1 9.7837 -4.6855 1.4734 27 6 8.3448 -2.8623 0.8987 28 6 6.0397 -2.0626 0.6174 29 8 2.0368 -0.7252 1.1444 30 1 -0.3633 -1.0269 0.0414 31 1 -0.3634 0.5492 0.8686 32 1 -0.3634 0.4774 -0.9100 33 1 2.3429 -0.0839 -2.0216 34 1 1.3266 -1.4903 -1.5787 35 1 3.1929 -2.5877 -0.7761 36 1 4.2102 -1.1813 -1.2212 37 1 4.5565 -4.5443 2.4800 38 1 6.1869 -4.4795 1.8062 39 1 5.2741 -2.6846 4.1510 40 1 6.0604 -4.2876 4.4136 41 1 7.6766 -2.5286 4.4940 42 1 7.9821 -3.4658 3.0510 43 1 6.3425 -0.9182 2.9532 44 1 8.0605 -0.8475 3.0428 45 1 7.3336 -0.2515 -0.3216 46 1 7.9929 0.2811 1.2144 47 1 10.1163 -0.7632 0.7915 48 1 9.6624 -0.4562 -0.8923 49 1 10.0701 -6.1440 -2.3503 50 1 8.9889 -3.0471 1.7790 51 1 7.7704 -3.7829 0.6714 52 1 6.0898 -2.7009 -0.2605 53 1 5.5398 -1.1269 0.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045971333.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:46 Heat of formation + Delta-G solvation = -45.972659 kcal Electronic energy + Delta-G solvation = -32403.011023 eV Core-core repulsion = 28468.511292 eV Total energy + Delta-G solvation = -3934.499731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.27070 -40.93555 -39.55420 -37.32722 -35.26123 -34.73846 -33.30666 -33.11636 -32.52625 -30.36824 -29.05329 -27.68621 -27.30587 -26.25190 -24.62987 -23.52826 -22.77413 -22.08941 -21.44600 -20.55192 -19.96539 -18.92883 -18.30914 -17.81267 -17.57533 -17.33132 -16.78878 -16.39828 -15.89605 -15.70557 -15.53468 -15.21822 -14.95273 -14.86290 -14.75185 -14.63782 -14.22577 -14.08386 -13.85495 -13.50867 -13.32249 -13.27009 -12.99939 -12.98449 -12.83555 -12.77409 -12.61878 -12.51175 -12.22666 -12.09485 -11.91147 -11.86394 -11.82274 -11.69776 -11.64532 -11.49386 -11.17041 -11.03055 -10.92403 -10.88849 -10.53154 -9.70702 -8.91985 -8.20967 -5.61863 1.23256 1.32381 1.39775 1.46135 1.69483 2.33922 2.81395 3.09767 3.28433 3.37532 3.41028 3.56227 3.69908 3.76160 3.80141 3.88489 3.91328 3.94035 4.08233 4.13874 4.21333 4.25278 4.34598 4.38871 4.42980 4.50656 4.51045 4.57002 4.62304 4.73428 4.76420 4.80323 4.87348 4.88513 4.92042 4.92832 4.95976 5.02055 5.07175 5.13574 5.15944 5.24031 5.26121 5.34736 5.41586 5.46543 5.52609 5.61321 5.79122 5.80715 6.10290 6.32669 6.83187 7.03988 7.53904 7.99014 8.97730 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.004157 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.159374 B = 6733.710751 C = 7247.889034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.092 0.908 4 C -0.143 4.143 5 C -0.147 4.147 6 C 0.058 3.942 7 H 0.118 0.882 8 C 0.510 3.490 9 O -0.568 6.568 10 N -0.600 5.600 11 C 0.101 3.899 12 C -0.116 4.116 13 C -0.127 4.127 14 C -0.079 4.079 15 C -0.075 4.075 16 C -0.110 4.110 17 C 0.112 3.888 18 N -0.623 5.623 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.030 4.030 22 N -0.960 5.960 23 Si 0.940 3.060 24 H -0.281 1.281 25 H -0.314 1.314 26 H -0.249 1.249 27 C 0.142 3.858 28 C 0.132 3.868 29 O -0.377 6.377 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.262 0.738 50 H 0.016 0.984 51 H 0.030 0.970 52 H 0.041 0.959 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 13.945 7.583 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.002 3.998 3 H 0.110 0.890 4 C -0.181 4.181 5 C -0.185 4.185 6 C -0.003 4.003 7 H 0.135 0.865 8 C 0.298 3.702 9 O -0.447 6.447 10 N -0.333 5.333 11 C -0.019 4.019 12 C -0.154 4.154 13 C -0.164 4.164 14 C -0.117 4.117 15 C -0.078 4.078 16 C -0.149 4.149 17 C -0.014 4.014 18 N -0.347 5.347 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.224 4.224 22 N -0.607 5.607 23 Si 0.770 3.230 24 H -0.208 1.208 25 H -0.243 1.243 26 H -0.173 1.173 27 C 0.015 3.985 28 C 0.009 3.991 29 O -0.296 6.296 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.033 0.967 51 H 0.048 0.952 52 H 0.060 0.940 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.385 13.410 8.018 21.238 hybrid contribution 0.336 -1.549 0.136 1.591 sum -14.050 11.861 8.154 20.114 Atomic orbital electron populations 1.21820 0.92201 1.02503 1.03610 1.23396 0.96321 0.96034 0.84043 0.89043 1.23022 0.96338 1.00028 0.98674 1.23001 1.01300 1.01343 0.92835 1.22947 0.86966 0.96155 0.94239 0.86494 1.20851 0.81762 0.84838 0.82793 1.90655 1.54883 1.59929 1.39200 1.48615 1.10662 1.30194 1.43844 1.23577 1.00005 0.85961 0.92404 1.22521 0.96888 1.01066 0.94957 1.20172 0.97020 0.98155 1.01082 1.21398 1.02969 0.96341 0.91021 1.19698 0.93931 0.97210 0.96924 1.21906 0.96349 0.95813 1.00816 1.22453 0.95779 0.84082 0.99134 1.44730 1.56970 1.08187 1.24768 1.19813 1.33088 0.88714 0.94039 0.90444 1.25515 0.99994 0.97468 0.99404 1.69839 1.54819 1.07595 1.28476 0.86142 0.77300 0.77224 0.82328 1.20798 1.24276 1.17271 1.20503 0.92406 0.95974 0.89630 1.20792 0.89759 0.98937 0.89576 1.89269 1.25792 1.74936 1.39634 0.93126 0.91985 0.88480 0.87413 0.90507 0.92277 0.87612 0.90019 0.92712 0.91847 0.89802 0.91121 0.92482 0.91118 0.90322 0.90722 0.88405 0.93633 0.93429 0.92877 0.96657 0.95173 0.94045 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.52 71.98 0.69 -1.47 16 2 C 0.06 1.02 3.93 31.10 0.12 1.15 16 3 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.14 -2.24 6.62 31.61 0.21 -2.03 16 5 C -0.15 -2.97 5.70 31.61 0.18 -2.79 16 6 C 0.06 1.37 2.73 30.35 0.08 1.45 16 7 H 0.12 2.16 7.19 -2.38 -0.02 2.14 16 8 C 0.51 15.49 6.88 87.62 0.60 16.10 16 9 O -0.57 -21.61 15.78 15.27 0.24 -21.36 16 10 N -0.60 -17.32 2.13 -811.88 -1.73 -19.05 16 11 C 0.10 3.08 5.97 87.47 0.52 3.60 16 12 C -0.12 -2.97 5.65 30.54 0.17 -2.80 16 13 C -0.13 -3.20 4.83 29.20 0.14 -3.05 16 14 C -0.08 -1.85 4.45 31.86 0.14 -1.71 16 15 C -0.08 -2.11 0.56 -54.66 -0.03 -2.14 16 16 C -0.11 -2.71 6.10 31.14 0.19 -2.52 16 17 C 0.11 3.74 7.27 87.91 0.64 4.37 16 18 N -0.62 -27.13 3.14 -697.40 -2.19 -29.32 16 19 C -0.23 -12.52 10.84 83.13 0.90 -11.62 16 20 H 0.08 4.52 8.06 -2.91 -0.02 4.49 16 21 C -0.03 -1.70 5.50 84.86 0.47 -1.23 16 22 N -0.96 -59.36 13.97 21.65 0.30 -59.06 16 23 Si 0.94 46.02 24.73 68.60 1.70 47.72 16 24 H -0.28 -13.30 6.63 99.48 0.66 -12.64 16 25 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 26 H -0.25 -11.36 5.64 99.48 0.56 -10.80 16 27 C 0.14 5.45 2.45 86.97 0.21 5.66 16 28 C 0.13 3.60 3.88 85.23 0.33 3.93 16 29 O -0.38 -10.07 10.62 -130.69 -1.39 -11.46 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.23 7.87 -2.38 -0.02 1.21 16 35 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 36 H 0.11 1.78 7.14 -2.39 -0.02 1.76 16 37 H 0.08 2.58 7.29 -2.47 -0.02 2.56 16 38 H 0.05 1.83 6.83 -2.56 -0.02 1.82 16 39 H 0.06 1.68 8.33 -1.18 -0.01 1.67 16 40 H 0.08 1.89 8.50 0.15 0.00 1.89 16 41 H 0.07 1.51 7.93 -3.09 -0.02 1.48 16 42 H 0.06 1.70 5.27 -3.89 -0.02 1.68 16 43 H 0.07 1.53 7.79 -1.97 -0.02 1.51 16 44 H 0.08 1.62 7.35 -5.16 -0.04 1.58 16 45 H 0.07 1.69 7.22 -2.78 -0.02 1.67 16 46 H 0.10 1.81 7.12 -3.98 -0.03 1.78 16 47 H 0.05 1.44 7.91 -3.79 -0.03 1.41 16 48 H 0.05 1.59 8.58 0.76 0.01 1.60 16 49 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.02 0.64 4.85 -1.51 -0.01 0.64 16 51 H 0.03 1.31 2.97 -1.38 0.00 1.30 16 52 H 0.04 1.36 7.78 -2.57 -0.02 1.34 16 53 H 0.11 2.20 3.89 -0.37 0.00 2.19 16 Total: -1.00 -72.45 379.39 3.21 -69.23 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.72 Total: 18.39 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.57 Total: 4.91 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.62 Total: -107.43 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.15 Total: -32.83 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.70 Total: 47.72 kcal Total: -72.45 3.21 -69.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045971333.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.260 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds