Wall clock time and date at job start Tue Mar 31 2020 20:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.33062 * 2 1 4 4 C 1.54479 * 110.37216 * 237.62848 * 2 1 3 5 5 C 1.54507 * 104.06395 * 217.19203 * 4 2 1 6 6 C 1.54481 * 104.06350 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.46684 * 265.10289 * 6 5 4 8 8 C 1.50694 * 110.37241 * 142.81320 * 6 5 4 9 9 O 1.21283 * 119.99907 * 248.16646 * 8 6 5 10 10 N 1.34777 * 120.00350 * 68.16368 * 8 6 5 11 11 C 1.44564 * 118.70634 * 0.02562 * 10 8 6 12 12 C 1.54758 * 109.60384 * 270.65921 * 11 10 8 13 13 C 1.47057 * 110.53131 * 288.36391 * 12 11 10 14 14 C 1.52810 * 114.31694 * 62.89853 * 13 12 11 15 15 C 1.50721 * 109.31528 * 275.68604 * 14 13 12 16 16 C 1.54214 * 110.93203 * 330.11454 * 15 14 13 17 17 C 1.55021 * 102.78515 * 218.15253 * 16 15 14 18 18 N 1.48151 * 103.30550 * 37.06002 * 17 16 15 19 19 C 1.36927 * 127.03292 * 140.92324 * 18 17 16 20 20 H 1.08011 * 120.00103 * 350.65067 * 19 18 17 21 21 C 1.38814 * 120.00282 * 170.64452 * 19 18 17 22 22 N 1.31618 * 120.00104 * 350.35677 * 21 19 18 23 23 Si 1.86803 * 120.00088 * 170.35005 * 21 19 18 24 24 H 1.48503 * 109.46910 * 90.00715 * 23 21 19 25 25 H 1.48494 * 109.47159 * 210.00209 * 23 21 19 26 26 H 1.48498 * 109.47159 * 330.00492 * 23 21 19 27 27 C 1.47573 * 105.93558 * 320.92596 * 18 17 16 28 28 C 1.47623 * 118.71132 * 180.02562 * 10 8 6 29 29 O 1.44424 * 104.80307 * 23.97892 * 6 5 4 30 30 H 1.09000 * 109.46461 * 299.20177 * 1 2 3 31 31 H 1.08996 * 109.46803 * 59.20221 * 1 2 3 32 32 H 1.08993 * 109.47250 * 179.20630 * 1 2 3 33 33 H 1.09005 * 110.51005 * 335.83380 * 4 2 1 34 34 H 1.09001 * 110.51213 * 98.54585 * 4 2 1 35 35 H 1.08999 * 110.51012 * 241.35514 * 5 4 2 36 36 H 1.08993 * 110.51320 * 118.64845 * 5 4 2 37 37 H 1.08995 * 109.44894 * 150.62431 * 11 10 8 38 38 H 1.08998 * 109.45216 * 30.69848 * 11 10 8 39 39 H 1.08997 * 109.26701 * 168.08674 * 12 11 10 40 40 H 1.09007 * 109.26211 * 48.63295 * 12 11 10 41 41 H 1.09005 * 108.51527 * 301.64588 * 13 12 11 42 42 H 1.09001 * 108.39675 * 184.06181 * 13 12 11 43 43 H 1.08993 * 109.50119 * 35.64877 * 14 13 12 44 44 H 1.09005 * 109.50517 * 155.72400 * 14 13 12 45 45 H 1.09002 * 110.74983 * 336.47899 * 16 15 14 46 46 H 1.09000 * 110.74868 * 99.82722 * 16 15 14 47 47 H 1.09003 * 110.65440 * 278.61048 * 17 16 15 48 48 H 1.08996 * 110.79889 * 155.58204 * 17 16 15 49 49 H 0.96993 * 120.00608 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.96502 * 266.03022 * 27 18 17 51 51 H 1.09000 * 109.99485 * 144.80026 * 27 18 17 52 52 H 1.09003 * 108.97164 * 258.63494 * 28 10 8 53 53 H 1.09004 * 108.97128 * 17.40054 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3178 -1.5065 -0.6843 6 6 3.3870 -1.0869 0.8008 7 1 4.0523 -0.2324 0.9249 8 6 3.8527 -2.2408 1.6508 9 8 3.0889 -2.7636 2.4346 10 7 5.1179 -2.6920 1.5400 11 6 6.0047 -2.0480 0.5973 12 6 5.8872 -2.7398 -0.7820 13 6 6.5091 -4.0719 -0.7456 14 6 5.8437 -5.0507 0.2210 15 6 6.3988 -4.8385 1.6061 16 6 7.8545 -4.3331 1.5449 17 6 8.5245 -5.0725 2.7313 18 7 7.8777 -6.4052 2.7115 19 6 8.4741 -7.6149 2.9477 20 1 9.5492 -7.6804 3.0285 21 6 7.6971 -8.7572 3.0836 22 7 6.3881 -8.6555 3.1757 23 14 8.5092 -10.4386 3.1355 24 1 8.8297 -10.7902 4.5423 25 1 7.5837 -11.4530 2.5704 26 1 9.7598 -10.4092 2.3354 27 6 6.4592 -6.1623 2.3851 28 6 5.5436 -3.8243 2.3861 29 8 2.0323 -0.7233 1.1451 30 1 -0.3632 0.5014 0.8971 31 1 -0.3633 0.5262 -0.8827 32 1 -0.3633 -1.0275 -0.0142 33 1 1.3276 -1.4937 -1.5756 34 1 2.3430 -0.0861 -2.0214 35 1 4.2109 -1.1786 -1.2162 36 1 3.1956 -2.5861 -0.7704 37 1 7.0315 -2.1237 0.9549 38 1 5.7309 -0.9974 0.5008 39 1 6.3874 -2.1297 -1.5341 40 1 4.8341 -2.8416 -1.0447 41 1 7.5544 -3.9581 -0.4581 42 1 6.4716 -4.4966 -1.7487 43 1 4.7676 -4.8784 0.2299 44 1 6.0460 -6.0728 -0.0994 45 1 8.3216 -4.6144 0.6011 46 1 7.8949 -3.2536 1.6903 47 1 8.3181 -4.5590 3.6703 48 1 9.5990 -5.1643 2.5729 49 1 5.8451 -9.4535 3.2710 50 1 5.8748 -6.0817 3.3017 51 1 6.0741 -6.9748 1.7688 52 1 6.1249 -3.4411 3.2248 53 1 4.6588 -4.3314 2.7710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045971334.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:50 Heat of formation + Delta-G solvation = -53.385030 kcal Electronic energy + Delta-G solvation = -31897.411966 eV Core-core repulsion = 27962.590810 eV Total energy + Delta-G solvation = -3934.821156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.16939 -40.62773 -39.28729 -37.58512 -35.14616 -34.42270 -33.30654 -33.13591 -32.05812 -30.12464 -28.61567 -28.32459 -26.66584 -26.31886 -24.55022 -23.50244 -22.91271 -22.02146 -21.70350 -19.75944 -19.44502 -18.83643 -18.41365 -17.76555 -17.37233 -16.81429 -16.53595 -16.43999 -16.19096 -15.57238 -15.40427 -15.09506 -14.86384 -14.83982 -14.66004 -14.50463 -14.05611 -13.75323 -13.59615 -13.42037 -13.31831 -13.22280 -13.13207 -12.80592 -12.77121 -12.64244 -12.57141 -12.43492 -12.13271 -12.05313 -11.85656 -11.79022 -11.66341 -11.58486 -11.39491 -11.28311 -11.16793 -10.96255 -10.78823 -10.67063 -10.48664 -9.63923 -8.90151 -7.88820 -5.22476 1.43545 1.45510 1.51549 1.54884 1.77079 2.48604 2.96156 3.30833 3.35713 3.54647 3.60975 3.74710 3.83511 3.86488 3.94617 3.98999 4.10618 4.12004 4.19105 4.26763 4.30823 4.35331 4.45530 4.48355 4.57756 4.62083 4.64394 4.73924 4.77966 4.81248 4.87982 4.91679 4.95928 4.97545 5.01063 5.05299 5.16511 5.20250 5.21479 5.24686 5.27922 5.32975 5.39686 5.43964 5.46759 5.56171 5.66251 5.69360 5.76506 5.87694 6.17675 6.42800 7.04287 7.14920 7.73737 8.46848 9.24254 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.002951 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.791856 B = 9487.451178 C = 9860.810833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 H 0.095 0.905 4 C -0.145 4.145 5 C -0.142 4.142 6 C 0.064 3.936 7 H 0.128 0.872 8 C 0.501 3.499 9 O -0.587 6.587 10 N -0.586 5.586 11 C 0.087 3.913 12 C -0.148 4.148 13 C -0.127 4.127 14 C -0.089 4.089 15 C -0.074 4.074 16 C -0.110 4.110 17 C 0.115 3.885 18 N -0.623 5.623 19 C -0.235 4.235 20 H 0.086 0.914 21 C -0.071 4.071 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.264 1.264 27 C 0.191 3.809 28 C 0.140 3.860 29 O -0.388 6.388 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.018 0.982 48 H 0.060 0.940 49 H 0.245 0.755 50 H -0.023 1.023 51 H 0.033 0.967 52 H 0.062 0.938 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 24.058 -15.903 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.000 4.000 3 H 0.113 0.887 4 C -0.183 4.183 5 C -0.180 4.180 6 C 0.004 3.996 7 H 0.145 0.855 8 C 0.289 3.711 9 O -0.467 6.467 10 N -0.318 5.318 11 C -0.035 4.035 12 C -0.186 4.186 13 C -0.164 4.164 14 C -0.127 4.127 15 C -0.076 4.076 16 C -0.148 4.148 17 C -0.010 4.010 18 N -0.348 5.348 19 C -0.364 4.364 20 H 0.104 0.896 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.189 1.189 27 C 0.065 3.935 28 C 0.017 3.983 29 O -0.308 6.308 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.036 0.964 48 H 0.078 0.922 49 H 0.054 0.946 50 H -0.005 1.005 51 H 0.051 0.949 52 H 0.080 0.920 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.994 23.516 -15.260 28.193 hybrid contribution -0.233 -2.009 1.020 2.265 sum -3.227 21.507 -14.240 25.995 Atomic orbital electron populations 1.21846 0.92976 1.02283 1.03374 1.23388 0.95940 0.96276 0.84402 0.88746 1.23078 0.96767 1.00011 0.98401 1.23356 1.01580 1.00980 0.92046 1.22986 0.86679 0.95424 0.94524 0.85514 1.21202 0.81756 0.85115 0.82990 1.90701 1.55434 1.60412 1.40151 1.47689 1.11142 1.32512 1.40482 1.22266 0.95499 0.97312 0.88417 1.21742 1.03239 0.96280 0.97308 1.20715 1.01886 0.95425 0.98405 1.20974 0.98810 0.99134 0.93789 1.21351 0.96179 0.94238 0.95860 1.23128 0.92966 0.99873 0.98790 1.22113 0.96932 0.85595 0.96336 1.45134 1.06172 1.01826 1.81627 1.19455 0.91611 0.84364 1.40954 0.89635 1.25707 0.96168 1.01887 1.02577 1.70180 1.04814 1.27860 1.57363 0.85096 0.77508 0.79238 0.77602 1.21415 1.22365 1.18867 1.20997 0.85380 0.92915 0.94231 1.21664 0.97707 0.86757 0.92163 1.89287 1.26368 1.75102 1.40002 0.92586 0.88249 0.93522 0.91106 0.86622 0.85012 0.91982 0.88299 0.87070 0.86609 0.90582 0.89556 0.91843 0.94173 0.94423 0.89276 0.88162 0.96440 0.92193 0.94596 1.00480 0.94856 0.91975 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.52 71.98 0.69 -1.50 16 2 C 0.06 0.88 3.92 31.10 0.12 1.00 16 3 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.15 -1.65 6.63 31.61 0.21 -1.44 16 5 C -0.14 -1.97 4.25 31.61 0.13 -1.84 16 6 C 0.06 1.33 2.76 30.35 0.08 1.42 16 7 H 0.13 1.68 7.02 -2.39 -0.02 1.66 16 8 C 0.50 15.53 6.93 87.65 0.61 16.14 16 9 O -0.59 -25.78 15.84 15.31 0.24 -25.54 16 10 N -0.59 -15.57 2.28 -818.50 -1.86 -17.43 16 11 C 0.09 1.30 4.89 87.34 0.43 1.73 16 12 C -0.15 -1.98 4.35 29.35 0.13 -1.85 16 13 C -0.13 -2.64 4.95 28.68 0.14 -2.50 16 14 C -0.09 -2.91 4.88 29.79 0.15 -2.76 16 15 C -0.07 -2.70 0.62 -51.97 -0.03 -2.73 16 16 C -0.11 -3.29 4.24 31.70 0.13 -3.16 16 17 C 0.12 4.54 7.29 86.75 0.63 5.17 16 18 N -0.62 -32.45 3.37 -689.68 -2.32 -34.77 16 19 C -0.23 -13.37 10.33 84.04 0.87 -12.50 16 20 H 0.09 4.59 7.85 -2.90 -0.02 4.56 16 21 C -0.07 -4.15 5.42 84.86 0.46 -3.69 16 22 N -0.95 -60.36 10.79 21.65 0.23 -60.13 16 23 Si 0.98 46.96 29.56 68.60 2.03 48.99 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.19 9.81 4.77 86.41 0.41 10.22 16 28 C 0.14 4.98 4.66 86.46 0.40 5.38 16 29 O -0.39 -10.29 10.61 -130.63 -1.39 -11.68 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.07 0.94 7.86 -2.38 -0.02 0.92 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.13 0.79 6.13 -2.39 -0.01 0.78 16 36 H 0.06 1.19 6.63 -2.39 -0.02 1.17 16 37 H 0.10 1.36 5.17 -2.39 -0.01 1.35 16 38 H 0.11 0.89 5.90 -2.39 -0.01 0.87 16 39 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 1.11 4.12 -2.38 -0.01 1.10 16 41 H 0.09 1.69 4.55 -2.38 -0.01 1.68 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.40 7.55 -2.39 -0.02 1.38 16 44 H 0.04 1.44 7.42 -2.38 -0.02 1.42 16 45 H 0.09 2.49 5.85 -2.39 -0.01 2.48 16 46 H 0.10 2.23 5.22 -2.39 -0.01 2.22 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 50 H -0.02 -1.35 7.47 -2.39 -0.02 -1.36 16 51 H 0.03 1.95 6.05 -2.39 -0.01 1.94 16 52 H 0.06 2.19 7.95 -2.39 -0.02 2.17 16 53 H 0.04 2.02 6.64 -2.38 -0.02 2.00 16 Total: -1.00 -85.10 375.16 3.41 -81.69 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.91 Total: 11.76 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.56 Total: 7.10 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.95 Total: -112.33 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.14 Total: -37.21 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -85.10 3.41 -81.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045971334.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.310 kcal (2) G-P(sol) polarization free energy of solvation -85.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds