Wall clock time and date at job start Tue Mar 31 2020 21:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.49118 * 2 1 4 4 O 1.42907 * 109.47928 * 239.97528 * 2 1 3 5 5 C 1.42898 * 114.09880 * 178.85753 * 4 2 1 6 6 C 1.53094 * 109.41412 * 61.15856 * 5 4 2 7 7 C 1.53176 * 109.16275 * 302.39204 * 6 5 4 8 8 C 1.53086 * 109.48294 * 120.03193 * 2 1 3 9 9 H 1.09006 * 109.57444 * 57.65266 * 8 2 1 10 10 C 1.50694 * 109.52201 * 297.49814 * 8 2 1 11 11 O 1.21284 * 120.00414 * 0.31105 * 10 8 2 12 12 N 1.34780 * 120.00033 * 180.31156 * 10 8 2 13 13 C 1.46500 * 119.99976 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47229 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.43286 * 59.90935 * 14 13 12 16 16 C 1.53145 * 109.43926 * 179.82658 * 14 13 12 17 17 C 1.53705 * 108.87402 * 66.12732 * 16 14 13 18 18 H 1.08994 * 112.09709 * 187.62089 * 17 16 14 19 19 C 1.54609 * 107.83379 * 312.23412 * 17 16 14 20 20 C 1.54313 * 104.75218 * 88.66984 * 19 17 16 21 21 C 1.54616 * 104.74849 * 359.97438 * 20 19 17 22 22 H 1.09001 * 112.18622 * 146.80097 * 21 20 19 23 23 C 1.53155 * 109.39828 * 300.02908 * 14 13 12 24 24 N 1.48289 * 104.25871 * 25.14435 * 21 20 19 25 25 C 1.36941 * 128.21162 * 138.38463 * 24 21 20 26 26 H 1.08002 * 119.99941 * 189.98027 * 25 24 21 27 27 C 1.38813 * 119.99818 * 9.97101 * 25 24 21 28 28 N 1.31617 * 119.99857 * 10.40879 * 27 25 24 29 29 Si 1.86803 * 119.99823 * 190.40300 * 27 25 24 30 30 H 1.48496 * 109.46831 * 84.99657 * 29 27 25 31 31 H 1.48503 * 109.46929 * 204.99724 * 29 27 25 32 32 H 1.48503 * 109.47212 * 324.99639 * 29 27 25 33 33 H 1.09003 * 109.46510 * 299.96940 * 1 2 3 34 34 H 1.09001 * 109.46921 * 59.96849 * 1 2 3 35 35 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 36 36 H 1.09001 * 109.47919 * 301.17761 * 5 4 2 37 37 H 1.08999 * 109.49342 * 181.14775 * 5 4 2 38 38 H 1.08996 * 109.52295 * 182.48899 * 6 5 4 39 39 H 1.08998 * 109.57447 * 62.32808 * 6 5 4 40 40 H 1.09007 * 109.54415 * 297.11391 * 7 6 5 41 41 H 1.09002 * 109.54443 * 176.84770 * 7 6 5 42 42 H 0.96999 * 120.00273 * 0.02562 * 12 10 8 43 43 H 1.08999 * 109.47018 * 60.00207 * 13 12 10 44 44 H 1.09000 * 109.47471 * 299.99994 * 13 12 10 45 45 H 1.08999 * 109.57163 * 185.94876 * 16 14 13 46 46 H 1.09004 * 109.56761 * 306.18920 * 16 14 13 47 47 H 1.08999 * 110.38021 * 207.48599 * 19 17 16 48 48 H 1.09006 * 110.38093 * 329.85432 * 19 17 16 49 49 H 1.09001 * 110.38167 * 241.18071 * 20 19 17 50 50 H 1.08996 * 110.47758 * 118.85940 * 20 19 17 51 51 H 1.08996 * 109.56821 * 53.65880 * 23 14 13 52 52 H 1.08996 * 109.56963 * 174.02530 * 23 14 13 53 53 H 0.97001 * 119.99906 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 8 2.0066 -0.6741 -1.1665 5 6 3.4307 -0.7093 -1.2792 6 6 4.0177 -1.4601 -0.0811 7 6 3.5712 -0.7710 1.2120 8 6 2.0407 -0.7223 1.2495 9 1 1.6444 -1.7375 1.2719 10 6 1.5904 0.0213 2.4803 11 8 0.9215 1.0271 2.3706 12 7 1.9310 -0.4311 3.7034 13 6 1.4937 0.2921 4.9000 14 6 2.0116 -0.4261 6.1478 15 1 3.1007 -0.4613 6.1202 16 6 1.5577 0.3330 7.3980 17 6 0.0269 0.2448 7.5049 18 1 -0.3656 0.8774 8.3009 19 6 -0.5653 0.5927 6.1197 20 6 -0.6277 -0.7544 5.3695 21 6 -0.0668 -1.7895 6.3718 22 1 -0.5429 -2.7644 6.2665 23 6 1.4564 -1.8531 6.1805 24 7 -0.3184 -1.1836 7.7017 25 6 -0.7643 -1.7977 8.8416 26 1 -1.0560 -1.2046 9.6958 27 6 -0.8414 -3.1825 8.8992 28 7 -0.2994 -3.9119 7.9471 29 14 -1.7143 -4.0107 10.3281 30 1 -3.1699 -4.0835 10.0437 31 1 -1.1759 -5.3828 10.5088 32 1 -1.4908 -3.2241 11.5677 33 1 -0.3632 0.5134 0.8903 34 1 -0.3633 0.5143 -0.8897 35 1 -0.3633 -1.0277 -0.0005 36 1 3.8192 0.3090 -1.2959 37 1 3.7102 -1.2200 -2.2007 38 1 5.1059 -1.4498 -0.1423 39 1 3.6623 -2.4905 -0.0861 40 1 3.9690 0.2435 1.2407 41 1 3.9393 -1.3328 2.0705 42 1 2.4663 -1.2353 3.7913 43 1 0.4046 0.3266 4.9259 44 1 1.8890 1.3077 4.8755 45 1 2.0119 -0.1147 8.2820 46 1 1.8606 1.3773 7.3211 47 1 -1.5650 1.0130 6.2290 48 1 0.0856 1.2906 5.5930 49 1 -0.0077 -0.7192 4.4738 50 1 -1.6575 -0.9980 5.1083 51 1 1.6856 -2.3556 5.2409 52 1 1.9059 -2.4008 7.0088 53 1 -0.3530 -4.8796 7.9876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048519756.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:00 Heat of formation + Delta-G solvation = 8.727127 kcal Electronic energy + Delta-G solvation = -31883.076240 eV Core-core repulsion = 27950.948469 eV Total energy + Delta-G solvation = -3932.127770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.76116 -41.18978 -39.34104 -36.22073 -34.96918 -34.36170 -33.52925 -32.89444 -31.97517 -31.65704 -29.23137 -27.96265 -25.96384 -25.12656 -24.80811 -23.35442 -22.23390 -21.96244 -21.20474 -20.91676 -20.27068 -18.81829 -18.28434 -17.78062 -17.12504 -16.65020 -16.62314 -16.24200 -16.02827 -15.71917 -15.45074 -15.14140 -14.59593 -14.53500 -14.46676 -14.17396 -13.88280 -13.70413 -13.48852 -13.29260 -13.19304 -13.10681 -13.06421 -12.98494 -12.83299 -12.60130 -12.41213 -12.33635 -12.32789 -11.99638 -11.96127 -11.92080 -11.41366 -11.31276 -11.14574 -11.03241 -10.97861 -10.80173 -10.64509 -10.42596 -10.35064 -9.42292 -8.74528 -7.78538 -5.11853 1.47167 1.49031 1.55598 1.68283 2.24642 2.52377 2.90536 3.35871 3.58340 3.61983 3.73513 3.75784 3.96728 4.00092 4.00963 4.04455 4.17543 4.22447 4.29183 4.30747 4.40960 4.42760 4.51158 4.55762 4.61983 4.63696 4.74557 4.79085 4.81564 4.85472 4.90175 4.93801 4.96709 5.00180 5.06862 5.09467 5.11370 5.17677 5.19762 5.30913 5.31562 5.36608 5.39669 5.53025 5.55564 5.57559 5.65066 5.86788 5.91998 6.28210 6.33366 6.63188 7.14244 7.31586 7.81028 8.60078 9.30158 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002963 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.649422 B = 9446.914525 C = 9719.256368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.113 3.887 3 H 0.056 0.944 4 O -0.394 6.394 5 C 0.049 3.951 6 C -0.149 4.149 7 C -0.113 4.113 8 C -0.135 4.135 9 H 0.110 0.890 10 C 0.517 3.483 11 O -0.571 6.571 12 N -0.711 5.711 13 C 0.013 3.987 14 C -0.077 4.077 15 H 0.070 0.930 16 C -0.116 4.116 17 C 0.140 3.860 18 H 0.067 0.933 19 C -0.149 4.149 20 C -0.165 4.165 21 C 0.171 3.829 22 H 0.075 0.925 23 C -0.099 4.099 24 N -0.608 5.608 25 C -0.228 4.228 26 H 0.074 0.926 27 C -0.060 4.060 28 N -0.935 5.935 29 Si 0.967 3.033 30 H -0.291 1.291 31 H -0.297 1.297 32 H -0.275 1.275 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.404 0.596 43 H 0.182 0.818 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.037 0.963 51 H 0.055 0.945 52 H 0.030 0.970 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 7.262 -16.139 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.074 0.926 4 O -0.314 6.314 5 C -0.027 4.027 6 C -0.187 4.187 7 C -0.151 4.151 8 C -0.157 4.157 9 H 0.128 0.872 10 C 0.304 3.696 11 O -0.451 6.451 12 N -0.363 5.363 13 C -0.107 4.107 14 C -0.095 4.095 15 H 0.088 0.912 16 C -0.156 4.156 17 C 0.033 3.967 18 H 0.085 0.915 19 C -0.187 4.187 20 C -0.203 4.203 21 C 0.065 3.935 22 H 0.093 0.907 23 C -0.138 4.138 24 N -0.330 5.330 25 C -0.358 4.358 26 H 0.092 0.908 27 C -0.254 4.254 28 N -0.583 5.583 29 Si 0.797 3.203 30 H -0.219 1.219 31 H -0.224 1.224 32 H -0.200 1.200 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.240 0.760 43 H 0.197 0.803 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.132 0.868 49 H 0.129 0.871 50 H 0.056 0.944 51 H 0.074 0.926 52 H 0.049 0.951 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.450 7.674 -16.173 20.242 hybrid contribution 0.032 -1.162 1.437 1.849 sum 9.482 6.512 -14.736 18.694 Atomic orbital electron populations 1.21941 0.92969 1.02616 1.03413 1.21683 0.95366 0.94201 0.83274 0.92619 1.87944 1.22650 1.78172 1.42585 1.22829 0.79940 1.00357 0.99551 1.22179 1.02501 1.00307 0.93690 1.21630 0.91300 1.02129 0.99999 1.22000 0.99228 1.01601 0.92850 0.87212 1.20641 0.79254 0.84691 0.84982 1.90634 1.40271 1.27128 1.87102 1.46235 1.54563 1.29940 1.05533 1.24850 1.08992 0.94154 0.82694 1.21153 0.99243 0.95193 0.93950 0.91207 1.22040 0.97220 0.99623 0.96704 1.21795 0.93339 0.86258 0.95336 0.91494 1.23323 1.01422 0.97144 0.96807 1.23525 1.00436 0.96221 1.00092 1.21533 0.93107 0.95854 0.83031 0.90721 1.21823 0.97939 0.94957 0.99106 1.45411 1.76145 1.04209 1.07225 1.19300 1.34373 0.89779 0.92315 0.90829 1.25412 1.02417 0.96692 1.00874 1.70007 1.48918 1.03961 1.35437 0.85264 0.78065 0.77430 0.79564 1.21868 1.22351 1.20002 0.90137 0.91754 0.92284 0.92740 0.87115 0.88376 0.90632 0.91431 0.89574 0.75959 0.80307 0.92674 0.93916 0.90281 0.92383 0.86752 0.87130 0.94373 0.92613 0.95116 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.28 71.98 0.67 -2.92 16 2 C 0.11 2.50 2.40 30.63 0.07 2.57 16 3 H 0.06 1.32 8.04 -2.39 -0.02 1.30 16 4 O -0.39 -8.34 10.41 -148.98 -1.55 -9.89 16 5 C 0.05 0.70 6.84 72.01 0.49 1.20 16 6 C -0.15 -1.81 6.14 30.68 0.19 -1.62 16 7 C -0.11 -1.69 5.18 30.71 0.16 -1.53 16 8 C -0.14 -2.72 2.23 -11.45 -0.03 -2.75 16 9 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 10 C 0.52 13.06 6.63 87.65 0.58 13.65 16 11 O -0.57 -17.92 13.81 -3.04 -0.04 -17.96 16 12 N -0.71 -17.17 4.28 -463.06 -1.98 -19.15 16 13 C 0.01 0.35 2.68 86.38 0.23 0.58 16 14 C -0.08 -2.37 2.77 -10.69 -0.03 -2.40 16 15 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 16 C -0.12 -3.88 5.37 30.88 0.17 -3.71 16 17 C 0.14 5.36 4.32 45.44 0.20 5.56 16 18 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 19 C -0.15 -5.02 5.72 31.59 0.18 -4.84 16 20 C -0.16 -6.10 5.72 31.59 0.18 -5.92 16 21 C 0.17 7.67 3.22 45.42 0.15 7.82 16 22 H 0.07 4.01 6.02 -2.39 -0.01 4.00 16 23 C -0.10 -3.81 5.27 30.86 0.16 -3.65 16 24 N -0.61 -29.39 2.83 -637.35 -1.80 -31.19 16 25 C -0.23 -12.41 10.39 84.03 0.87 -11.54 16 26 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 27 C -0.06 -3.32 5.43 84.86 0.46 -2.86 16 28 N -0.93 -53.40 10.60 21.65 0.23 -53.18 16 29 Si 0.97 45.22 29.57 68.60 2.03 47.25 16 30 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 31 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 32 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 33 H 0.08 2.18 5.73 -2.39 -0.01 2.17 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.09 1.10 7.67 -2.39 -0.02 1.09 16 42 H 0.40 8.44 6.80 -92.71 -0.63 7.81 16 43 H 0.18 5.52 1.12 -109.81 -0.12 5.39 16 44 H 0.06 1.50 8.00 -2.39 -0.02 1.48 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.12 3.35 4.84 -2.38 -0.01 3.33 16 49 H 0.11 3.67 3.94 -2.39 -0.01 3.66 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.06 1.89 6.71 -2.39 -0.02 1.87 16 52 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -64.71 379.58 1.75 -62.96 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.16 Total: 33.52 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.71 Total: -12.37 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.55 Total: -103.51 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.59 Total: -27.86 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.71 1.75 -62.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048519756.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.691 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds