Wall clock time and date at job start Tue Mar 31 2020 21:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47834 * 2 1 4 4 O 1.42903 * 109.48098 * 120.02822 * 2 1 3 5 5 C 1.42896 * 114.09673 * 181.12959 * 4 2 1 6 6 C 1.53098 * 109.42522 * 298.85709 * 5 4 2 7 7 C 1.53178 * 109.15989 * 57.60246 * 6 5 4 8 8 C 1.53090 * 109.47764 * 239.98164 * 2 1 3 9 9 H 1.08999 * 109.52480 * 62.43930 * 8 2 1 10 10 C 1.50704 * 109.52380 * 302.31064 * 8 2 1 11 11 O 1.21279 * 119.99715 * 0.02562 * 10 8 2 12 12 N 1.34774 * 120.00426 * 180.02562 * 10 8 2 13 13 C 1.46493 * 120.00313 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47348 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.43674 * 59.92810 * 14 13 12 16 16 C 1.53149 * 109.43736 * 179.79390 * 14 13 12 17 17 C 1.53701 * 108.87642 * 66.17938 * 16 14 13 18 18 H 1.09007 * 112.57988 * 187.92623 * 17 16 14 19 19 C 1.54607 * 107.83257 * 312.22379 * 17 16 14 20 20 C 1.54313 * 104.74895 * 88.66514 * 19 17 16 21 21 C 1.54605 * 104.75089 * 0.02562 * 20 19 17 22 22 H 1.08999 * 112.69052 * 147.06957 * 21 20 19 23 23 C 1.53150 * 109.43677 * 300.01903 * 14 13 12 24 24 N 1.48286 * 107.27860 * 64.00397 * 17 16 14 25 25 C 1.36942 * 128.21018 * 107.42058 * 24 17 16 26 26 H 1.08001 * 120.00229 * 162.44654 * 25 24 17 27 27 C 1.38815 * 120.00016 * 342.44457 * 25 24 17 28 28 N 1.31628 * 119.99781 * 2.61335 * 27 25 24 29 29 Si 1.86796 * 120.00359 * 182.61191 * 27 25 24 30 30 H 1.48497 * 109.47270 * 89.99810 * 29 27 25 31 31 H 1.48501 * 109.47390 * 210.00142 * 29 27 25 32 32 H 1.48500 * 109.46843 * 330.00399 * 29 27 25 33 33 H 1.09003 * 109.46665 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46666 * 299.99773 * 1 2 3 35 35 H 1.08996 * 109.47179 * 59.99755 * 1 2 3 36 36 H 1.08996 * 109.48201 * 178.87154 * 5 4 2 37 37 H 1.08999 * 109.48181 * 58.84306 * 5 4 2 38 38 H 1.08994 * 109.52150 * 297.70085 * 6 5 4 39 39 H 1.09000 * 109.57666 * 177.54171 * 6 5 4 40 40 H 1.09003 * 109.54159 * 183.15104 * 7 6 5 41 41 H 1.08999 * 109.61812 * 62.93231 * 7 6 5 42 42 H 0.97009 * 119.99564 * 359.97438 * 12 10 8 43 43 H 1.08997 * 109.47432 * 299.99869 * 13 12 10 44 44 H 1.09006 * 109.47065 * 60.00448 * 13 12 10 45 45 H 1.09000 * 109.56881 * 185.99605 * 16 14 13 46 46 H 1.08996 * 109.57003 * 306.35910 * 16 14 13 47 47 H 1.08994 * 110.38508 * 207.48532 * 19 17 16 48 48 H 1.09008 * 110.38175 * 329.84761 * 19 17 16 49 49 H 1.08995 * 110.38061 * 241.18659 * 20 19 17 50 50 H 1.08996 * 110.37954 * 118.82130 * 20 19 17 51 51 H 1.09002 * 109.56902 * 53.63970 * 23 14 13 52 52 H 1.09002 * 109.57510 * 173.88321 * 23 14 13 53 53 H 0.97003 * 119.99668 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0067 -0.6742 1.1664 5 6 3.4308 -0.7095 1.2789 6 6 4.0177 -1.4601 0.0806 7 6 3.5711 -0.7707 -1.2123 8 6 2.0405 -0.7220 -1.2497 9 1 1.7139 -0.1846 -2.1399 10 6 1.4927 -2.1257 -1.2795 11 8 0.7650 -2.5115 -0.3893 12 7 1.8115 -2.9522 -2.2952 13 6 1.2794 -4.3167 -2.3238 14 6 1.7901 -5.0372 -3.5732 15 1 2.8794 -5.0709 -3.5527 16 6 1.2376 -6.4653 -3.5996 17 6 -0.2874 -6.4051 -3.7820 18 1 -0.7610 -7.3808 -3.6717 19 6 -0.8438 -5.3691 -2.7784 20 6 -0.7885 -4.0234 -3.5317 21 6 -0.2045 -4.3731 -4.9198 22 1 -0.6034 -3.7429 -5.7147 23 6 1.3272 -4.2816 -4.8223 24 7 -0.5485 -5.8025 -5.1115 25 6 -1.0006 -6.4198 -6.2473 26 1 -1.4131 -5.8318 -7.0538 27 6 -0.9288 -7.8013 -6.3619 28 7 -0.4739 -8.5222 -5.3589 29 14 -1.4777 -8.6375 -7.9395 30 1 -0.3240 -8.7492 -8.8678 31 1 -1.9945 -9.9941 -7.6268 32 1 -2.5508 -7.8339 -8.5781 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3632 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8899 36 1 3.7101 -1.2206 2.2002 37 1 3.8194 0.3087 1.2958 38 1 3.6614 -2.4902 0.0859 39 1 5.1060 -1.4508 0.1412 40 1 3.9392 -1.3323 -2.0709 41 1 3.9689 0.2437 -1.2424 42 1 2.3933 -2.6433 -3.0074 43 1 1.6085 -4.8538 -1.4343 44 1 0.1901 -4.2816 -2.3449 45 1 1.6831 -7.0139 -4.4294 46 1 1.4735 -6.9655 -2.6604 47 1 -1.8721 -5.6129 -2.5118 48 1 -0.2184 -5.3308 -1.8864 49 1 -0.1359 -3.3231 -3.0104 50 1 -1.7897 -3.6053 -3.6357 51 1 1.6266 -3.2361 -4.7484 52 1 1.7785 -4.7289 -5.7079 53 1 -0.4233 -9.4875 -5.4392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048519757.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:05 Heat of formation + Delta-G solvation = 14.279164 kcal Electronic energy + Delta-G solvation = -32217.346875 eV Core-core repulsion = 28285.459858 eV Total energy + Delta-G solvation = -3931.887016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.75475 -41.27157 -38.93840 -36.17126 -34.94833 -34.20730 -33.49279 -32.90305 -32.30554 -31.33354 -29.12657 -27.97515 -25.82997 -25.11927 -24.80345 -23.22644 -22.73259 -22.05506 -21.15548 -20.68046 -20.14122 -18.69984 -18.00791 -17.56643 -17.04815 -16.84639 -16.69093 -16.42702 -15.97581 -15.55826 -15.29846 -14.96264 -14.59815 -14.50513 -14.36609 -14.15136 -13.77767 -13.57250 -13.49448 -13.24532 -13.17658 -13.16057 -13.06138 -12.88493 -12.78023 -12.66719 -12.53446 -12.50245 -12.28758 -11.95620 -11.91707 -11.59052 -11.38662 -11.28078 -11.24470 -11.01370 -10.86842 -10.78765 -10.48678 -10.44890 -10.15768 -9.38130 -8.68562 -7.78394 -5.17711 1.47661 1.47859 1.56214 1.86918 2.37216 2.51869 3.00093 3.35937 3.62368 3.65852 3.80881 3.86600 3.97399 3.97836 4.04067 4.04766 4.17661 4.27491 4.31246 4.39974 4.43134 4.48088 4.51919 4.57416 4.63522 4.71314 4.74941 4.79074 4.82171 4.84146 4.89577 4.92184 5.00306 5.02545 5.06703 5.13788 5.16267 5.17864 5.21064 5.29065 5.32666 5.39596 5.48440 5.54373 5.55737 5.61549 5.75869 5.84807 5.90446 6.35471 6.48703 6.77341 7.13638 7.51483 7.79933 8.61258 9.29601 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028302 B = 0.002913 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.106657 B = 9609.193994 C = 9801.490350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 H 0.086 0.914 4 O -0.395 6.395 5 C 0.053 3.947 6 C -0.158 4.158 7 C -0.110 4.110 8 C -0.140 4.140 9 H 0.131 0.869 10 C 0.512 3.488 11 O -0.561 6.561 12 N -0.715 5.715 13 C 0.019 3.981 14 C -0.074 4.074 15 H 0.067 0.933 16 C -0.101 4.101 17 C 0.170 3.830 18 H 0.076 0.924 19 C -0.165 4.165 20 C -0.149 4.149 21 C 0.143 3.857 22 H 0.067 0.933 23 C -0.113 4.113 24 N -0.608 5.608 25 C -0.231 4.231 26 H 0.074 0.926 27 C -0.058 4.058 28 N -0.936 5.936 29 Si 0.969 3.031 30 H -0.289 1.289 31 H -0.298 1.298 32 H -0.273 1.273 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.405 0.595 43 H 0.035 0.965 44 H 0.181 0.819 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.102 0.898 49 H 0.118 0.882 50 H 0.051 0.949 51 H 0.083 0.917 52 H 0.040 0.960 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.427 20.420 8.624 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.103 0.897 4 O -0.315 6.315 5 C -0.023 4.023 6 C -0.196 4.196 7 C -0.147 4.147 8 C -0.162 4.162 9 H 0.149 0.851 10 C 0.300 3.700 11 O -0.440 6.440 12 N -0.368 5.368 13 C -0.102 4.102 14 C -0.093 4.093 15 H 0.085 0.915 16 C -0.141 4.141 17 C 0.064 3.936 18 H 0.094 0.906 19 C -0.203 4.203 20 C -0.187 4.187 21 C 0.036 3.964 22 H 0.085 0.915 23 C -0.152 4.152 24 N -0.329 5.329 25 C -0.360 4.360 26 H 0.092 0.908 27 C -0.252 4.252 28 N -0.584 5.584 29 Si 0.799 3.201 30 H -0.216 1.216 31 H -0.225 1.225 32 H -0.198 1.198 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.241 0.759 43 H 0.053 0.947 44 H 0.197 0.803 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.119 0.881 49 H 0.136 0.864 50 H 0.070 0.930 51 H 0.102 0.898 52 H 0.059 0.941 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.734 19.821 9.245 23.939 hybrid contribution 0.237 -1.303 -1.336 1.881 sum 9.971 18.518 7.909 22.470 Atomic orbital electron populations 1.22096 0.93676 1.04061 1.02371 1.21968 0.95220 0.94544 0.83468 0.89671 1.88041 1.21680 1.78524 1.43247 1.22697 0.80741 1.00400 0.98459 1.22200 1.02200 0.99206 0.96017 1.21647 0.91511 1.03390 0.98184 1.22184 0.98447 0.93040 1.02494 0.85126 1.20863 0.80316 0.88008 0.80825 1.90644 1.38138 1.77296 1.37887 1.46218 1.51422 1.13335 1.25840 1.24703 1.07833 0.81607 0.96019 1.21116 0.99066 0.94868 0.94269 0.91496 1.21807 0.98308 0.94995 0.98946 1.21530 0.92758 0.95962 0.83389 0.90647 1.23491 1.00588 0.96611 0.99589 1.23345 1.01174 0.97057 0.97082 1.21769 0.93483 0.86099 0.95002 0.91505 1.22064 0.97060 0.99516 0.96584 1.45348 1.75838 1.04424 1.07332 1.19283 1.32322 0.90243 0.94180 0.90809 1.25590 1.01995 0.97200 1.00389 1.70005 1.52720 1.04528 1.31126 0.85218 0.77635 0.77447 0.79842 1.21589 1.22490 1.19783 0.91469 0.92473 0.89917 0.89380 0.91124 0.94138 0.88701 0.89871 0.87985 0.75906 0.94704 0.80321 0.94683 0.93629 0.93742 0.88081 0.86418 0.93022 0.89826 0.94076 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 9.21 71.99 0.66 -2.81 16 2 C 0.11 1.97 2.84 30.63 0.09 2.06 16 3 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 4 O -0.40 -9.59 9.47 -133.03 -1.26 -10.84 16 5 C 0.05 0.90 6.84 72.01 0.49 1.40 16 6 C -0.16 -2.46 5.88 30.69 0.18 -2.28 16 7 C -0.11 -1.29 5.46 30.71 0.17 -1.13 16 8 C -0.14 -2.27 2.60 -11.45 -0.03 -2.30 16 9 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 10 C 0.51 12.58 5.39 87.66 0.47 13.05 16 11 O -0.56 -18.79 12.90 12.93 0.17 -18.62 16 12 N -0.72 -16.39 4.26 -463.08 -1.97 -18.37 16 13 C 0.02 0.55 2.68 86.38 0.23 0.78 16 14 C -0.07 -2.41 2.76 -10.69 -0.03 -2.44 16 15 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.10 -4.23 5.36 30.88 0.17 -4.07 16 17 C 0.17 7.97 3.19 45.43 0.14 8.12 16 18 H 0.08 4.20 6.08 -2.38 -0.01 4.19 16 19 C -0.16 -6.41 5.72 31.59 0.18 -6.23 16 20 C -0.15 -5.12 5.72 31.59 0.18 -4.94 16 21 C 0.14 5.48 4.32 45.45 0.20 5.68 16 22 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 23 C -0.11 -3.66 5.28 30.90 0.16 -3.49 16 24 N -0.61 -29.76 2.82 -637.19 -1.80 -31.56 16 25 C -0.23 -12.61 10.39 84.03 0.87 -11.74 16 26 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 27 C -0.06 -3.21 5.49 84.86 0.47 -2.75 16 28 N -0.94 -54.52 10.55 21.65 0.23 -54.30 16 29 Si 0.97 45.36 29.55 68.60 2.03 47.38 16 30 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 31 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 32 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 33 H 0.07 1.92 5.32 -2.39 -0.01 1.90 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.04 0.90 7.39 -2.39 -0.02 0.88 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 0.83 7.51 -2.39 -0.02 0.82 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.40 7.05 6.72 -92.70 -0.62 6.43 16 43 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 44 H 0.18 5.86 1.12 -109.54 -0.12 5.74 16 45 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.10 3.67 4.84 -2.38 -0.01 3.66 16 49 H 0.12 3.54 3.94 -2.39 -0.01 3.53 16 50 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.08 2.00 6.71 -2.39 -0.02 1.99 16 52 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -69.89 375.90 2.17 -67.72 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.17 Total: 31.67 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.61 Total: -13.08 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.54 Total: -104.22 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.09 Total: -29.47 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.89 2.17 -67.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048519757.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.000 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds