Wall clock time and date at job start Tue Mar 31 2020 21:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47978 * 2 1 4 4 O 1.42906 * 109.49282 * 239.97084 * 2 1 3 5 5 C 1.42897 * 114.09688 * 178.85201 * 4 2 1 6 6 C 1.53093 * 109.41497 * 61.15788 * 5 4 2 7 7 C 1.53180 * 109.16307 * 302.39125 * 6 5 4 8 8 C 1.53095 * 109.47774 * 120.02014 * 2 1 3 9 9 H 1.09001 * 109.52503 * 297.57438 * 8 2 1 10 10 C 1.50700 * 109.52132 * 57.70240 * 8 2 1 11 11 O 1.21287 * 120.00124 * 359.97438 * 10 8 2 12 12 N 1.34777 * 120.00006 * 179.97438 * 10 8 2 13 13 C 1.46499 * 119.99849 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46946 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.42983 * 59.68026 * 14 13 12 16 16 C 1.53605 * 108.45458 * 179.70492 * 14 13 12 17 17 C 1.53699 * 109.28521 * 67.02047 * 16 14 13 18 18 H 1.08995 * 112.58453 * 186.98704 * 17 16 14 19 19 C 1.54606 * 107.83191 * 311.28604 * 17 16 14 20 20 C 1.54310 * 104.85076 * 88.61312 * 19 17 16 21 21 C 1.54866 * 104.62796 * 0.08199 * 20 19 17 22 22 H 1.08998 * 112.19886 * 146.74744 * 21 20 19 23 23 C 1.53142 * 109.43530 * 299.77531 * 14 13 12 24 24 N 1.48291 * 107.27783 * 63.06684 * 17 16 14 25 25 C 1.36938 * 128.21140 * 107.43910 * 24 17 16 26 26 H 1.08001 * 119.99950 * 145.58043 * 25 24 17 27 27 C 1.38808 * 119.99864 * 325.57578 * 25 24 17 28 28 N 1.31618 * 120.00059 * 4.98595 * 27 25 24 29 29 Si 1.86801 * 120.00110 * 184.98390 * 27 25 24 30 30 H 1.48498 * 109.47029 * 59.99904 * 29 27 25 31 31 H 1.48502 * 109.47380 * 180.02562 * 29 27 25 32 32 H 1.48507 * 109.47196 * 300.00051 * 29 27 25 33 33 H 1.08993 * 109.47182 * 299.97741 * 1 2 3 34 34 H 1.09004 * 109.46933 * 59.97932 * 1 2 3 35 35 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47970 * 181.14232 * 5 4 2 37 37 H 1.09000 * 109.48366 * 301.16629 * 5 4 2 38 38 H 1.09007 * 109.52018 * 62.29506 * 6 5 4 39 39 H 1.09000 * 109.52221 * 182.42340 * 6 5 4 40 40 H 1.08994 * 109.54081 * 297.11218 * 7 6 5 41 41 H 1.09004 * 109.54221 * 176.84635 * 7 6 5 42 42 H 0.97003 * 119.99843 * 0.02562 * 12 10 8 43 43 H 1.08993 * 109.47356 * 60.00386 * 13 12 10 44 44 H 1.08995 * 109.47146 * 300.00043 * 13 12 10 45 45 H 1.08997 * 110.13398 * 306.60326 * 16 14 13 46 46 H 1.09003 * 108.59439 * 186.49835 * 16 14 13 47 47 H 1.08999 * 110.38513 * 207.48732 * 19 17 16 48 48 H 1.08995 * 110.38572 * 329.73854 * 19 17 16 49 49 H 1.09002 * 110.38715 * 118.87244 * 20 19 17 50 50 H 1.09003 * 110.38060 * 241.24077 * 20 19 17 51 51 H 1.08997 * 109.57329 * 174.05183 * 23 14 13 52 52 H 1.08999 * 109.57243 * 53.68751 * 23 14 13 53 53 H 0.97001 * 120.00128 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0069 -0.6742 -1.1663 5 6 3.4310 -0.7090 -1.2788 6 6 4.0179 -1.4596 -0.0805 7 6 3.5711 -0.7704 1.2125 8 6 2.0405 -0.7221 1.2497 9 1 1.7137 -0.1848 2.1400 10 6 1.4929 -2.1258 1.2792 11 8 0.7653 -2.5117 0.3889 12 7 1.8118 -2.9523 2.2949 13 6 1.2790 -4.3167 2.3239 14 6 1.7910 -5.0377 3.5725 15 1 1.4674 -4.4969 4.4618 16 6 1.2133 -6.4610 3.5833 17 6 1.8115 -7.2605 2.4149 18 1 1.3486 -8.2403 2.2977 19 6 1.6854 -6.3985 1.1377 20 6 2.9744 -5.5510 1.1036 21 6 3.7606 -5.9838 2.3657 22 1 4.8389 -5.9541 2.2096 23 6 3.3211 -5.0923 3.5380 24 7 3.2728 -7.3555 2.6486 25 6 3.9996 -8.4502 3.0339 26 1 5.0042 -8.5895 2.6625 27 6 3.4453 -9.3809 3.9018 28 7 2.1892 -9.2643 4.2771 29 14 4.4821 -10.7990 4.5372 30 1 5.6492 -10.2635 5.2831 31 1 3.6624 -11.6454 5.4410 32 1 4.9587 -11.6157 3.3921 33 1 -0.3633 0.5134 0.8901 34 1 -0.3633 0.5142 -0.8898 35 1 -0.3633 -1.0277 -0.0005 36 1 3.7105 -1.2199 -2.2001 37 1 3.8194 0.3093 -1.2957 38 1 3.6618 -2.4898 -0.0860 39 1 5.1062 -1.4500 -0.1421 40 1 3.9687 0.2440 1.2411 41 1 3.9391 -1.3321 2.0711 42 1 2.3934 -2.6435 3.0072 43 1 1.6075 -4.8540 1.4343 44 1 0.1898 -4.2810 2.3454 45 1 0.1284 -6.4263 3.4845 46 1 1.4808 -6.9375 4.5265 47 1 1.6259 -7.0347 0.2546 48 1 0.8087 -5.7538 1.1998 49 1 3.5493 -5.7702 0.2038 50 1 2.7321 -4.4893 1.1511 51 1 3.6927 -5.5100 4.4736 52 1 3.7193 -4.0869 3.4014 53 1 1.8017 -9.9149 4.8834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048519759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:13 Heat of formation + Delta-G solvation = 7.377031 kcal Electronic energy + Delta-G solvation = -32516.256361 eV Core-core repulsion = 28584.070046 eV Total energy + Delta-G solvation = -3932.186315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.68202 -41.23493 -38.92217 -36.13433 -34.90997 -34.23279 -33.48948 -32.85684 -32.25189 -31.39369 -29.11264 -27.93968 -25.77717 -25.13419 -24.79748 -23.22062 -22.70365 -22.05871 -21.14941 -20.66056 -20.11464 -18.68093 -18.01617 -17.48834 -17.19527 -16.77778 -16.64667 -16.22759 -16.06455 -15.61141 -15.39982 -14.86415 -14.56768 -14.45164 -14.40232 -14.17870 -13.72164 -13.61903 -13.45183 -13.28838 -13.12828 -13.12476 -13.08718 -12.87647 -12.80945 -12.68360 -12.53581 -12.45413 -12.27426 -11.98184 -11.89727 -11.57637 -11.55180 -11.28286 -11.20577 -11.01159 -10.86858 -10.68990 -10.50569 -10.38617 -10.12261 -9.40011 -8.46270 -7.89294 -5.33498 1.46927 1.47897 1.54288 1.87235 2.38306 2.49796 3.01710 3.30046 3.63858 3.66719 3.82982 3.88891 3.98319 3.99164 4.06129 4.08621 4.19565 4.27552 4.30882 4.40453 4.44795 4.48214 4.52882 4.58890 4.64074 4.72810 4.74461 4.81503 4.83684 4.84966 4.90619 4.93869 5.03540 5.04114 5.06609 5.12009 5.17388 5.20311 5.21079 5.32930 5.36311 5.42002 5.49150 5.55565 5.57889 5.65819 5.73766 5.78298 5.95683 6.36840 6.50428 6.77776 7.11989 7.51595 7.73949 8.66391 9.23856 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.003185 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.065743 B = 8790.379475 C = 9148.415893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 H 0.085 0.915 4 O -0.394 6.394 5 C 0.054 3.946 6 C -0.161 4.161 7 C -0.110 4.110 8 C -0.139 4.139 9 H 0.129 0.871 10 C 0.512 3.488 11 O -0.561 6.561 12 N -0.716 5.716 13 C 0.019 3.981 14 C -0.074 4.074 15 H 0.067 0.933 16 C -0.103 4.103 17 C 0.183 3.817 18 H 0.043 0.957 19 C -0.162 4.162 20 C -0.146 4.146 21 C 0.144 3.856 22 H 0.062 0.938 23 C -0.110 4.110 24 N -0.604 5.604 25 C -0.252 4.252 26 H 0.062 0.938 27 C -0.035 4.035 28 N -0.919 5.919 29 Si 0.964 3.036 30 H -0.277 1.277 31 H -0.294 1.294 32 H -0.281 1.281 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.404 0.596 43 H 0.177 0.823 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.100 0.900 49 H 0.049 0.951 50 H 0.116 0.884 51 H 0.037 0.963 52 H 0.080 0.920 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 22.671 -4.444 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.103 0.897 4 O -0.314 6.314 5 C -0.023 4.023 6 C -0.199 4.199 7 C -0.148 4.148 8 C -0.160 4.160 9 H 0.147 0.853 10 C 0.300 3.700 11 O -0.440 6.440 12 N -0.369 5.369 13 C -0.101 4.101 14 C -0.093 4.093 15 H 0.085 0.915 16 C -0.143 4.143 17 C 0.076 3.924 18 H 0.061 0.939 19 C -0.200 4.200 20 C -0.184 4.184 21 C 0.038 3.962 22 H 0.080 0.920 23 C -0.149 4.149 24 N -0.326 5.326 25 C -0.381 4.381 26 H 0.079 0.921 27 C -0.232 4.232 28 N -0.563 5.563 29 Si 0.792 3.208 30 H -0.203 1.203 31 H -0.221 1.221 32 H -0.207 1.207 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.241 0.759 43 H 0.192 0.808 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.118 0.882 49 H 0.068 0.932 50 H 0.133 0.867 51 H 0.056 0.944 52 H 0.099 0.901 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.393 22.068 -5.055 22.682 hybrid contribution 0.517 -1.378 1.207 1.903 sum 1.910 20.690 -3.847 21.131 Atomic orbital electron populations 1.22080 0.93729 1.03943 1.02303 1.21962 0.95174 0.94553 0.83542 0.89712 1.88041 1.21698 1.78489 1.43158 1.22696 0.80679 1.00354 0.98526 1.22231 1.02273 0.99508 0.95894 1.21650 0.91434 1.03376 0.98303 1.22172 0.98511 0.92993 1.02372 0.85345 1.20869 0.80216 0.87945 0.80994 1.90642 1.38164 1.77228 1.37945 1.46226 1.51208 1.13526 1.25907 1.24648 0.97403 0.82878 1.05186 1.21209 0.95843 0.95404 0.96821 0.91463 1.21936 0.97244 0.94479 1.00647 1.21144 0.85675 0.94853 0.90718 0.93852 1.23419 0.98581 0.98905 0.99106 1.23332 0.95730 1.01049 0.98245 1.21780 0.96232 0.85369 0.92834 0.91990 1.21995 0.94898 0.99239 0.98805 1.45146 1.03296 1.04774 1.79386 1.19016 0.98095 1.00337 1.20673 0.92083 1.25941 0.97498 1.02371 0.97397 1.70058 1.12670 1.37074 1.36486 0.85423 0.78281 0.79118 0.77996 1.20307 1.22063 1.20700 0.90028 0.92429 0.91573 0.89413 0.91188 0.93658 0.88768 0.88047 0.89786 0.75936 0.80776 0.94350 0.93784 0.93253 0.93545 0.88192 0.93209 0.86658 0.94371 0.90121 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.21 71.98 0.66 -2.74 16 2 C 0.11 1.99 2.84 30.63 0.09 2.07 16 3 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 4 O -0.39 -9.71 9.46 -133.02 -1.26 -10.97 16 5 C 0.05 0.96 6.84 72.01 0.49 1.45 16 6 C -0.16 -2.69 5.88 30.69 0.18 -2.51 16 7 C -0.11 -1.38 5.46 30.71 0.17 -1.21 16 8 C -0.14 -2.29 2.60 -11.45 -0.03 -2.32 16 9 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 10 C 0.51 12.72 5.39 87.66 0.47 13.19 16 11 O -0.56 -18.85 12.90 12.91 0.17 -18.68 16 12 N -0.72 -16.75 4.28 -463.06 -1.98 -18.74 16 13 C 0.02 0.58 2.68 86.38 0.23 0.81 16 14 C -0.07 -2.46 2.83 -10.54 -0.03 -2.49 16 15 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 16 C -0.10 -4.39 5.14 31.03 0.16 -4.23 16 17 C 0.18 8.53 3.10 45.43 0.14 8.67 16 18 H 0.04 2.37 7.28 -2.39 -0.02 2.36 16 19 C -0.16 -6.29 5.73 31.59 0.18 -6.11 16 20 C -0.15 -5.10 5.75 31.68 0.18 -4.92 16 21 C 0.14 5.66 4.28 45.52 0.20 5.85 16 22 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 23 C -0.11 -3.70 5.30 30.88 0.16 -3.54 16 24 N -0.60 -29.78 2.76 -636.74 -1.76 -31.54 16 25 C -0.25 -13.84 10.29 84.03 0.86 -12.97 16 26 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 27 C -0.03 -1.93 5.48 84.86 0.47 -1.47 16 28 N -0.92 -52.78 10.29 21.65 0.22 -52.56 16 29 Si 0.96 44.65 29.56 68.60 2.03 46.68 16 30 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 31 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 32 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.07 1.87 5.32 -2.39 -0.01 1.86 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 1.04 7.39 -2.38 -0.02 1.03 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.92 7.51 -2.38 -0.02 0.90 16 42 H 0.40 7.32 6.74 -92.71 -0.62 6.70 16 43 H 0.18 5.80 1.10 -105.08 -0.12 5.69 16 44 H 0.04 1.25 8.02 -2.39 -0.02 1.23 16 45 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 2.48 7.05 -2.39 -0.02 2.46 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.10 3.63 4.92 -2.39 -0.01 3.61 16 49 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.12 3.60 4.01 -2.39 -0.01 3.59 16 51 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.08 2.04 6.73 -2.39 -0.02 2.02 16 53 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -68.93 375.57 2.18 -66.75 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.18 Total: 31.53 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.59 Total: -12.46 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.52 Total: -102.84 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.09 Total: -29.66 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.93 2.18 -66.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048519759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.126 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds