Wall clock time and date at job start Tue Mar 31 2020 21:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47828 * 2 1 4 4 C 1.53105 * 109.48451 * 240.05327 * 2 1 3 5 5 C 1.53171 * 109.15653 * 182.49905 * 4 2 1 6 6 H 1.09005 * 109.54379 * 296.93465 * 5 4 2 7 7 C 1.50699 * 109.54491 * 176.75751 * 5 4 2 8 8 O 1.21280 * 119.99693 * 0.17325 * 7 5 4 9 9 N 1.34777 * 120.00238 * 180.17468 * 7 5 4 10 10 C 1.46503 * 119.99826 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.46919 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.43077 * 59.92306 * 11 10 9 13 13 C 1.53152 * 109.43271 * 179.83341 * 11 10 9 14 14 C 1.53695 * 108.87798 * 66.17419 * 13 11 10 15 15 H 1.09006 * 112.09758 * 187.61261 * 14 13 11 16 16 C 1.54601 * 108.37470 * 311.97288 * 14 13 11 17 17 C 1.54825 * 104.65019 * 88.78091 * 16 14 13 18 18 C 1.54604 * 104.65346 * 0.02562 * 17 16 14 19 19 H 1.09005 * 112.69106 * 147.18711 * 18 17 16 20 20 C 1.53146 * 109.43453 * 300.05377 * 11 10 9 21 21 N 1.48291 * 107.27644 * 64.00859 * 14 13 11 22 22 C 1.36935 * 128.21553 * 106.78223 * 21 14 13 23 23 H 1.07997 * 120.00310 * 155.04646 * 22 21 14 24 24 C 1.38819 * 119.99745 * 335.04969 * 22 21 14 25 25 N 1.31618 * 120.00004 * 354.98489 * 24 22 21 26 26 Si 1.86799 * 119.99924 * 174.98254 * 24 22 21 27 27 H 1.48502 * 109.46936 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47308 * 299.99776 * 26 24 22 29 29 H 1.48499 * 109.47251 * 60.00315 * 26 24 22 30 30 C 1.53183 * 109.11382 * 56.84671 * 5 4 2 31 31 C 1.53098 * 109.15858 * 303.06253 * 30 5 4 32 32 O 1.42898 * 109.41308 * 57.60900 * 31 30 5 33 33 H 1.09006 * 109.47595 * 299.98094 * 1 2 3 34 34 H 1.08998 * 109.47436 * 59.98084 * 1 2 3 35 35 H 1.09008 * 109.47233 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.59928 * 62.54781 * 4 2 1 37 37 H 1.09004 * 109.44937 * 302.35664 * 4 2 1 38 38 H 0.96994 * 119.99816 * 0.02562 * 9 7 5 39 39 H 1.09002 * 109.47237 * 60.00068 * 10 9 7 40 40 H 1.08999 * 109.46902 * 299.99679 * 10 9 7 41 41 H 1.09002 * 109.56771 * 306.35110 * 13 11 10 42 42 H 1.09003 * 109.56519 * 185.99459 * 13 11 10 43 43 H 1.08998 * 110.38469 * 207.70756 * 16 14 13 44 44 H 1.08996 * 110.38350 * 330.08047 * 16 14 13 45 45 H 1.08997 * 110.33526 * 241.26457 * 17 16 14 46 46 H 1.09007 * 110.62443 * 118.88786 * 17 16 14 47 47 H 1.09000 * 109.56734 * 53.64247 * 20 11 10 48 48 H 1.09002 * 109.56994 * 173.88408 * 20 11 10 49 49 H 0.97002 * 120.00007 * 180.02562 * 25 24 22 50 50 H 1.08995 * 109.52486 * 62.96593 * 30 5 4 51 51 H 1.08998 * 109.52241 * 183.09973 * 30 5 4 52 52 H 1.08998 * 109.47597 * 177.59222 * 31 30 5 53 53 H 1.08998 * 109.47874 * 297.62543 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7205 -1.2507 5 6 3.5710 -0.7710 -1.2120 6 1 3.9702 0.2429 -1.2415 7 6 4.0800 -1.5479 -2.3987 8 8 3.2972 -2.0133 -3.1997 9 7 5.4050 -1.7256 -2.5700 10 6 5.8996 -2.4813 -3.7234 11 6 7.4281 -2.5349 -3.6806 12 1 7.7481 -3.0231 -2.7601 13 6 7.9441 -3.3287 -4.8844 14 6 7.6185 -2.5509 -6.1694 15 1 7.8431 -3.1283 -7.0663 16 6 6.1367 -2.1137 -6.1122 17 6 6.1609 -0.7401 -5.3984 18 6 7.6551 -0.4830 -5.0956 19 1 7.9162 0.5746 -5.1352 20 6 7.9893 -1.1106 -3.7227 21 7 8.3772 -1.2778 -6.1179 22 6 9.4855 -0.9224 -6.8393 23 1 9.7028 0.1205 -7.0168 24 6 10.3298 -1.9027 -7.3425 25 7 10.1212 -3.1675 -7.0441 26 14 11.7620 -1.4267 -8.4433 27 1 12.5047 -2.6483 -8.8452 28 1 11.2478 -0.7395 -9.6552 29 1 12.6717 -0.5142 -7.7052 30 6 4.0176 -1.4601 0.0812 31 6 3.4306 -0.7090 1.2793 32 8 2.0065 -0.6740 1.1665 33 1 -0.3634 0.5135 0.8902 34 1 -0.3634 0.5141 -0.8898 35 1 -0.3634 -1.0277 -0.0005 36 1 1.7163 -0.1819 -2.1410 37 1 1.6431 -1.7353 -1.2727 38 1 6.0309 -1.3537 -1.9291 39 1 5.5785 -1.9922 -4.6431 40 1 5.4999 -3.4949 -3.6922 41 1 7.4577 -4.3037 -4.9145 42 1 9.0230 -3.4594 -4.8002 43 1 5.7311 -2.0140 -7.1190 44 1 5.5516 -2.8300 -5.5355 45 1 5.5877 -0.7842 -4.4724 46 1 5.7667 0.0389 -6.0512 47 1 7.5348 -0.5156 -2.9306 48 1 9.0700 -1.1397 -3.5832 49 1 10.7114 -3.8524 -7.3954 50 1 3.6613 -2.4901 0.0869 51 1 5.1059 -1.4507 0.1419 52 1 3.7099 -1.2199 2.2007 53 1 3.8192 0.3092 1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048577522.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:49 Heat of formation + Delta-G solvation = -3.058499 kcal Electronic energy + Delta-G solvation = -31399.441791 eV Core-core repulsion = 27466.802958 eV Total energy + Delta-G solvation = -3932.638834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.64875 -41.01492 -39.45687 -36.19216 -34.85581 -34.34062 -33.63850 -32.90613 -32.22789 -31.32666 -28.91776 -28.29365 -26.08088 -24.97992 -24.76298 -23.59928 -22.19865 -21.88041 -21.17609 -20.76855 -20.34100 -18.74492 -18.12855 -17.54299 -17.22288 -16.88044 -16.66783 -16.41814 -16.05558 -15.65451 -15.20424 -15.03255 -14.78511 -14.51618 -14.49018 -14.24707 -13.90446 -13.65627 -13.49892 -13.32015 -13.14203 -13.12655 -13.05689 -12.80252 -12.78140 -12.66816 -12.50256 -12.33485 -12.28056 -12.05661 -11.98652 -11.69352 -11.48628 -11.38544 -11.26773 -11.02641 -10.93730 -10.79782 -10.77217 -10.49467 -10.29370 -9.48061 -8.59899 -7.84710 -5.23207 1.47019 1.48351 1.54387 1.70789 2.29453 2.51094 2.90394 3.33924 3.62009 3.62650 3.71095 3.81405 3.96547 3.97170 3.98425 4.05542 4.25496 4.26011 4.26719 4.30493 4.38968 4.50836 4.52042 4.56466 4.57693 4.63784 4.72322 4.75548 4.80420 4.81727 4.86606 4.91866 5.01642 5.03317 5.05697 5.08630 5.12728 5.14397 5.19790 5.29674 5.32404 5.36226 5.40713 5.51536 5.56326 5.59743 5.63452 5.77323 5.94578 6.32129 6.35641 6.66680 7.11966 7.34918 7.77144 8.63227 9.27483 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.002526 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.877963 B =11082.487248 C =11215.017940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.076 0.924 4 C -0.126 4.126 5 C -0.105 4.105 6 H 0.124 0.876 7 C 0.511 3.489 8 O -0.585 6.585 9 N -0.710 5.710 10 C 0.018 3.982 11 C -0.074 4.074 12 H 0.067 0.933 13 C -0.102 4.102 14 C 0.181 3.819 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.145 4.145 18 C 0.141 3.859 19 H 0.066 0.934 20 C -0.113 4.113 21 N -0.604 5.604 22 C -0.240 4.240 23 H 0.068 0.932 24 C -0.049 4.049 25 N -0.929 5.929 26 Si 0.967 3.033 27 H -0.297 1.297 28 H -0.283 1.283 29 H -0.278 1.278 30 C -0.143 4.143 31 C 0.061 3.939 32 O -0.401 6.401 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.408 0.592 39 H 0.179 0.821 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.038 0.962 49 H 0.246 0.754 50 H 0.058 0.942 51 H 0.099 0.901 52 H 0.109 0.891 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 7.148 17.548 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.093 0.907 4 C -0.164 4.164 5 C -0.126 4.126 6 H 0.141 0.859 7 C 0.298 3.702 8 O -0.465 6.465 9 N -0.362 5.362 10 C -0.102 4.102 11 C -0.093 4.093 12 H 0.085 0.915 13 C -0.142 4.142 14 C 0.074 3.926 15 H 0.067 0.933 16 C -0.200 4.200 17 C -0.183 4.183 18 C 0.035 3.965 19 H 0.084 0.916 20 C -0.152 4.152 21 N -0.326 5.326 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.245 4.245 25 N -0.575 5.575 26 Si 0.796 3.204 27 H -0.223 1.223 28 H -0.209 1.209 29 H -0.204 1.204 30 C -0.181 4.181 31 C -0.015 4.015 32 O -0.321 6.321 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.245 0.755 39 H 0.195 0.805 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.132 0.868 46 H 0.073 0.927 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.077 0.923 51 H 0.118 0.882 52 H 0.127 0.873 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.720 6.639 16.975 23.429 hybrid contribution 1.798 -0.365 -0.954 2.068 sum -12.922 6.274 16.021 21.518 Atomic orbital electron populations 1.21784 0.92453 1.02687 1.03312 1.22203 0.95768 0.95302 0.83802 0.90653 1.22008 0.93493 1.01816 0.99132 1.21433 0.97355 1.01206 0.92633 0.85854 1.21045 0.82072 0.80047 0.86996 1.90682 1.56702 1.51818 1.47282 1.46188 1.06940 1.55105 1.27925 1.24674 0.94311 0.97086 0.94151 1.21118 0.93441 0.96651 0.98106 0.91479 1.21834 1.00210 0.96701 0.95413 1.21173 0.87559 0.88006 0.95819 0.93311 1.23504 0.98735 0.97872 0.99892 1.23343 0.97887 0.95864 1.01244 1.21954 0.90897 0.94850 0.88833 0.91585 1.22196 0.99457 0.95570 0.97975 1.45254 1.29701 1.14923 1.42756 1.19144 0.99319 0.92179 1.26320 0.91421 1.25715 1.00141 0.95855 1.02782 1.70060 1.39789 0.99593 1.48031 0.85346 0.79702 0.76427 0.78905 1.22287 1.20889 1.20381 1.22204 1.02732 0.99878 0.93314 1.22714 0.80033 1.00715 0.98031 1.87922 1.22292 1.78443 1.43421 0.91192 0.89813 0.92821 0.90476 0.92692 0.75527 0.80526 0.94229 0.93866 0.93428 0.93245 0.88056 0.86822 0.92669 0.90015 0.94290 0.94484 0.92317 0.88209 0.87317 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.56 71.98 0.69 -1.26 16 2 C 0.09 1.30 3.26 30.63 0.10 1.40 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 4 C -0.13 -2.33 4.02 30.69 0.12 -2.21 16 5 C -0.11 -1.74 2.61 -11.42 -0.03 -1.77 16 6 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 7 C 0.51 12.43 6.92 87.66 0.61 13.04 16 8 O -0.58 -19.49 15.97 -3.03 -0.05 -19.54 16 9 N -0.71 -15.91 4.31 -463.05 -2.00 -17.90 16 10 C 0.02 0.52 2.70 86.38 0.23 0.76 16 11 C -0.07 -2.40 2.77 -10.69 -0.03 -2.43 16 12 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.10 -4.25 5.19 30.88 0.16 -4.09 16 14 C 0.18 8.31 3.05 45.43 0.14 8.45 16 15 H 0.05 2.65 6.92 -2.38 -0.02 2.63 16 16 C -0.16 -6.08 5.76 31.76 0.18 -5.90 16 17 C -0.15 -4.88 5.76 31.76 0.18 -4.69 16 18 C 0.14 5.36 4.33 45.75 0.20 5.56 16 19 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 20 C -0.11 -3.66 5.32 31.19 0.17 -3.49 16 21 N -0.60 -29.25 2.77 -635.62 -1.76 -31.01 16 22 C -0.24 -13.03 10.34 84.04 0.87 -12.17 16 23 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 24 C -0.05 -2.73 5.43 84.86 0.46 -2.27 16 25 N -0.93 -53.45 10.26 21.65 0.22 -53.23 16 26 Si 0.97 44.90 29.56 68.60 2.03 46.92 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 30 C -0.14 -1.94 5.30 30.69 0.16 -1.77 16 31 C 0.06 0.73 6.84 72.02 0.49 1.22 16 32 O -0.40 -6.98 10.41 -148.98 -1.55 -8.53 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.29 8.03 -2.38 -0.02 1.27 16 38 H 0.41 6.82 6.81 -92.71 -0.63 6.19 16 39 H 0.18 5.64 1.12 -103.88 -0.12 5.52 16 40 H 0.04 1.26 8.02 -2.39 -0.02 1.24 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 2.36 7.32 -2.39 -0.02 2.35 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.10 3.53 4.90 -2.39 -0.01 3.52 16 45 H 0.11 3.34 4.04 -2.39 -0.01 3.33 16 46 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.08 1.95 6.71 -2.39 -0.02 1.94 16 48 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.10 0.94 7.68 -2.39 -0.02 0.92 16 52 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -68.15 383.58 1.76 -66.39 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.16 Total: 28.53 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.71 Total: -11.62 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -3.54 Total: -102.15 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -1.60 Total: -28.07 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.15 1.76 -66.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048577522.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.331 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds