Wall clock time and date at job start Tue Mar 31 2020 21:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47280 * 2 1 4 4 C 1.53094 * 109.47893 * 120.02700 * 2 1 3 5 5 C 1.53181 * 109.16067 * 177.59228 * 4 2 1 6 6 H 1.09004 * 109.61413 * 62.93710 * 5 4 2 7 7 C 1.50697 * 109.54048 * 183.15346 * 5 4 2 8 8 O 1.21275 * 120.00102 * 359.56305 * 7 5 4 9 9 N 1.34782 * 119.99723 * 179.55617 * 7 5 4 10 10 C 1.46500 * 119.99930 * 180.27906 * 9 7 5 11 11 C 1.52999 * 109.47216 * 179.72693 * 10 9 7 12 12 H 1.09010 * 109.43439 * 59.65915 * 11 10 9 13 13 C 1.53146 * 109.43601 * 179.52368 * 11 10 9 14 14 C 1.53695 * 108.87852 * 66.17718 * 13 11 10 15 15 H 1.09001 * 112.58805 * 187.93007 * 14 13 11 16 16 C 1.54614 * 107.83191 * 312.22368 * 14 13 11 17 17 C 1.54315 * 104.74605 * 88.66112 * 16 14 13 18 18 C 1.54605 * 104.75203 * 0.02562 * 17 16 14 19 19 H 1.09002 * 112.69304 * 147.07504 * 18 17 16 20 20 C 1.53143 * 109.43610 * 299.75046 * 11 10 9 21 21 N 1.48289 * 104.26365 * 25.13068 * 18 17 16 22 22 C 1.36937 * 128.20812 * 138.38111 * 21 18 17 23 23 H 1.08003 * 119.99821 * 157.87535 * 22 21 18 24 24 C 1.38810 * 120.00315 * 337.87909 * 22 21 18 25 25 N 1.31621 * 120.00304 * 159.24055 * 24 22 21 26 26 Si 1.86796 * 120.00073 * 339.24100 * 24 22 21 27 27 H 1.48502 * 109.47214 * 92.78443 * 26 24 22 28 28 H 1.48500 * 109.47572 * 212.78890 * 26 24 22 29 29 H 1.48501 * 109.46999 * 332.78528 * 26 24 22 30 30 C 1.53177 * 109.03840 * 303.02732 * 5 4 2 31 31 C 1.53083 * 109.16372 * 56.97863 * 30 5 4 32 32 O 1.42894 * 109.48416 * 239.97686 * 2 1 3 33 33 H 1.09001 * 109.46380 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47355 * 300.02576 * 1 2 3 35 35 H 1.08996 * 109.46926 * 60.02861 * 1 2 3 36 36 H 1.08999 * 109.51602 * 57.69436 * 4 2 1 37 37 H 1.08999 * 109.52597 * 297.50070 * 4 2 1 38 38 H 0.97002 * 120.00301 * 0.02562 * 9 7 5 39 39 H 1.09003 * 109.47162 * 299.72488 * 10 9 7 40 40 H 1.08994 * 109.47474 * 59.72303 * 10 9 7 41 41 H 1.09003 * 109.56580 * 185.99551 * 13 11 10 42 42 H 1.08997 * 109.57128 * 306.35473 * 13 11 10 43 43 H 1.09002 * 110.38519 * 207.48107 * 16 14 13 44 44 H 1.08994 * 110.37997 * 329.84720 * 16 14 13 45 45 H 1.08996 * 110.37952 * 241.18340 * 17 16 14 46 46 H 1.09008 * 110.37498 * 118.82602 * 17 16 14 47 47 H 1.09002 * 109.57354 * 53.63641 * 20 11 10 48 48 H 1.08997 * 109.57452 * 173.88489 * 20 11 10 49 49 H 0.96994 * 120.00249 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.52256 * 176.88534 * 30 5 4 51 51 H 1.09003 * 109.51890 * 297.00833 * 30 5 4 52 52 H 1.08995 * 109.48503 * 62.37522 * 31 30 5 53 53 H 1.09001 * 109.48226 * 182.39811 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9703 0.2431 1.2417 7 6 4.0800 -1.5475 2.3991 8 8 3.2973 -2.0101 3.2018 9 7 5.4048 -1.7282 2.5685 10 6 5.8992 -2.4885 3.7190 11 6 7.4272 -2.5501 3.6712 12 1 7.8320 -1.5382 3.6964 13 6 7.9437 -3.3349 4.8806 14 6 7.4918 -4.7984 4.7537 15 1 7.7077 -5.3823 5.6484 16 6 5.9856 -4.8002 4.4047 17 6 5.9395 -4.7438 2.8632 18 6 7.4222 -4.7138 2.4259 19 1 7.5913 -5.2243 1.4778 20 6 7.8690 -3.2435 2.3791 21 7 8.1469 -5.3592 3.5471 22 6 9.1769 -6.2594 3.4834 23 1 9.8409 -6.3807 4.3265 24 6 9.3676 -7.0158 2.3353 25 7 10.5410 -7.5609 2.0936 26 14 7.9590 -7.2602 1.1331 27 1 8.0176 -6.2126 0.0822 28 1 8.0725 -8.6002 0.5032 29 1 6.6668 -7.1621 1.8582 30 6 4.0177 -1.4599 -0.0809 31 6 3.4308 -0.7091 -1.2789 32 8 2.0067 -0.6740 -1.1664 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3634 0.5142 0.8897 35 1 -0.3633 0.5134 -0.8902 36 1 1.6444 -1.7374 1.2708 37 1 1.7148 -0.1843 2.1399 38 1 6.0308 -1.3580 1.9266 39 1 5.5841 -1.9990 4.6406 40 1 5.4937 -3.4997 3.6878 41 1 9.0325 -3.2899 4.9070 42 1 7.5366 -2.9050 5.7957 43 1 5.5134 -5.7140 4.7654 44 1 5.4960 -3.9249 4.8313 45 1 5.4272 -3.8407 2.5316 46 1 5.4445 -5.6299 2.4656 47 1 7.4088 -2.7491 1.5236 48 1 8.9541 -3.1926 2.2901 49 1 10.6744 -8.0891 1.2911 50 1 5.1059 -1.4495 -0.1421 51 1 3.6624 -2.4904 -0.0859 52 1 3.8193 0.3092 -1.2957 53 1 3.7103 -1.2198 -2.2004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048577523.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:54 Heat of formation + Delta-G solvation = 8.358558 kcal Electronic energy + Delta-G solvation = -31814.811519 eV Core-core repulsion = 27882.667766 eV Total energy + Delta-G solvation = -3932.143753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.95739 -41.08545 -39.51223 -36.33026 -34.92371 -34.47821 -33.68429 -33.03270 -32.46529 -32.12678 -28.97974 -28.43272 -26.08210 -25.08077 -24.82946 -23.64037 -22.46628 -21.96305 -21.47898 -21.07312 -20.22280 -18.86742 -18.29110 -17.84240 -17.35836 -17.10451 -16.95105 -16.19375 -15.99326 -15.53145 -15.47544 -15.24467 -15.04233 -14.80336 -14.62347 -14.25367 -14.07727 -14.02547 -13.62625 -13.55670 -13.51641 -13.19865 -13.17892 -13.06857 -12.85054 -12.79087 -12.46969 -12.36339 -12.26267 -12.09158 -11.91916 -11.72231 -11.51271 -11.42331 -11.38036 -11.18909 -11.12433 -10.90766 -10.80338 -10.53010 -10.35051 -9.50012 -8.99993 -8.17918 -5.42231 1.22170 1.36665 1.45794 1.67197 2.26682 2.39329 2.88025 3.01173 3.27931 3.60007 3.67451 3.73990 3.78707 3.79959 3.86919 3.95870 4.09878 4.14034 4.22666 4.23562 4.28171 4.31292 4.43981 4.47526 4.49442 4.52338 4.55059 4.69338 4.72774 4.75893 4.78238 4.83605 4.84208 4.89440 4.97061 5.01745 5.04354 5.07061 5.11520 5.16858 5.21891 5.27427 5.27594 5.33926 5.39242 5.41327 5.53544 5.59831 5.73773 6.13714 6.33700 6.61917 6.74700 7.30846 7.52879 8.23828 9.03209 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003383 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.295862 B = 8274.453404 C = 9146.241812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.077 0.923 4 C -0.126 4.126 5 C -0.104 4.104 6 H 0.125 0.875 7 C 0.511 3.489 8 O -0.581 6.581 9 N -0.714 5.714 10 C 0.008 3.992 11 C -0.071 4.071 12 H 0.088 0.912 13 C -0.115 4.115 14 C 0.142 3.858 15 H 0.070 0.930 16 C -0.153 4.153 17 C -0.162 4.162 18 C 0.127 3.873 19 H 0.046 0.954 20 C -0.119 4.119 21 N -0.617 5.617 22 C -0.214 4.214 23 H 0.059 0.941 24 C -0.038 4.038 25 N -0.960 5.960 26 Si 0.938 3.062 27 H -0.277 1.277 28 H -0.317 1.317 29 H -0.257 1.257 30 C -0.149 4.149 31 C 0.062 3.938 32 O -0.402 6.402 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.408 0.592 39 H 0.060 0.940 40 H 0.174 0.826 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.040 0.960 47 H 0.079 0.921 48 H 0.048 0.952 49 H 0.260 0.740 50 H 0.099 0.901 51 H 0.057 0.943 52 H 0.074 0.926 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 21.488 -3.444 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.165 4.165 5 C -0.125 4.125 6 H 0.143 0.857 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.366 5.366 10 C -0.112 4.112 11 C -0.090 4.090 12 H 0.106 0.894 13 C -0.155 4.155 14 C 0.037 3.963 15 H 0.088 0.912 16 C -0.191 4.191 17 C -0.200 4.200 18 C 0.022 3.978 19 H 0.064 0.936 20 C -0.158 4.158 21 N -0.340 5.340 22 C -0.343 4.343 23 H 0.077 0.923 24 C -0.232 4.232 25 N -0.607 5.607 26 Si 0.770 3.230 27 H -0.205 1.205 28 H -0.246 1.246 29 H -0.181 1.181 30 C -0.187 4.187 31 C -0.014 4.014 32 O -0.322 6.322 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.245 0.755 39 H 0.078 0.922 40 H 0.189 0.811 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.117 0.883 51 H 0.076 0.924 52 H 0.092 0.908 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.091 20.891 -3.065 27.165 hybrid contribution 0.665 -0.820 -0.668 1.249 sum -16.426 20.072 -3.733 26.203 Atomic orbital electron populations 1.21789 0.92476 1.02649 1.03354 1.22226 0.95770 0.95332 0.83825 0.90509 1.22011 0.93477 1.01822 0.99142 1.21417 0.97366 1.01193 0.92519 0.85728 1.20980 0.82176 0.80022 0.86943 1.90680 1.56651 1.51682 1.47104 1.46219 1.06956 1.55286 1.28113 1.24813 0.95197 1.02972 0.88197 1.21098 0.93773 0.99353 0.94774 0.89416 1.22011 1.00462 0.95128 0.97850 1.21890 0.90605 0.93775 0.90078 0.91185 1.23381 0.97990 1.02958 0.94805 1.23548 0.97305 1.02470 0.96647 1.21931 0.91280 0.93368 0.91244 0.93645 1.22077 1.00507 0.95182 0.98031 1.45562 1.38226 1.47957 1.02262 1.18546 1.01918 1.12458 1.01341 0.92318 1.25600 0.98450 0.98955 1.00184 1.69936 1.22869 1.39570 1.28346 0.85957 0.82510 0.75153 0.79418 1.20529 1.24633 1.18141 1.22239 1.02761 0.99980 0.93678 1.22690 0.80085 1.00711 0.97962 1.87931 1.22215 1.78484 1.43570 0.92953 0.89602 0.91274 0.92750 0.90215 0.75542 0.92202 0.81060 0.92899 0.89534 0.92474 0.85983 0.85997 0.94090 0.90267 0.93306 0.93099 0.88292 0.92441 0.90767 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.57 71.98 0.69 -1.24 16 2 C 0.09 1.27 3.26 30.63 0.10 1.37 16 3 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 4 C -0.13 -2.24 4.01 30.69 0.12 -2.12 16 5 C -0.10 -1.63 2.61 -11.42 -0.03 -1.66 16 6 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 7 C 0.51 11.41 6.91 87.66 0.61 12.01 16 8 O -0.58 -17.83 15.97 -3.02 -0.05 -17.88 16 9 N -0.71 -13.99 4.30 -463.07 -1.99 -15.98 16 10 C 0.01 0.19 2.68 86.38 0.23 0.42 16 11 C -0.07 -1.78 2.76 -10.70 -0.03 -1.81 16 12 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 13 C -0.11 -3.32 5.37 30.88 0.17 -3.15 16 14 C 0.14 5.13 4.32 45.43 0.20 5.33 16 15 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.15 -4.86 5.72 31.59 0.18 -4.68 16 17 C -0.16 -5.53 5.55 31.59 0.18 -5.35 16 18 C 0.13 5.04 2.88 45.45 0.13 5.17 16 19 H 0.05 2.05 3.12 -2.39 -0.01 2.04 16 20 C -0.12 -3.66 5.28 30.89 0.16 -3.50 16 21 N -0.62 -28.19 2.57 -637.11 -1.63 -29.82 16 22 C -0.21 -12.11 10.74 84.03 0.90 -11.21 16 23 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 24 C -0.04 -2.23 5.47 84.86 0.46 -1.76 16 25 N -0.96 -60.93 13.97 21.65 0.30 -60.63 16 26 Si 0.94 47.34 24.71 68.60 1.70 49.03 16 27 H -0.28 -13.27 6.67 99.48 0.66 -12.61 16 28 H -0.32 -16.45 7.11 99.48 0.71 -15.74 16 29 H -0.26 -12.40 5.62 99.48 0.56 -11.84 16 30 C -0.15 -2.17 5.29 30.68 0.16 -2.00 16 31 C 0.06 0.80 6.84 72.01 0.49 1.30 16 32 O -0.40 -7.33 10.41 -148.98 -1.55 -8.88 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 1.26 8.03 -2.39 -0.02 1.24 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.41 5.92 6.82 -92.71 -0.63 5.29 16 39 H 0.06 1.40 7.99 -2.39 -0.02 1.38 16 40 H 0.17 4.73 1.12 -109.44 -0.12 4.60 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.12 3.25 4.84 -2.39 -0.01 3.24 16 45 H 0.12 3.59 3.95 -2.39 -0.01 3.58 16 46 H 0.04 1.53 6.99 -2.38 -0.02 1.51 16 47 H 0.08 1.91 6.73 -2.39 -0.02 1.89 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.10 1.06 7.67 -2.39 -0.02 1.04 16 51 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.87 376.35 1.47 -72.40 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.03 Total: 24.63 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.72 Total: -12.88 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.32 Total: -106.43 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.60 Total: -26.75 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.70 Total: 49.03 kcal Total: -73.87 1.47 -72.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048577523.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.763 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds