Wall clock time and date at job start Tue Mar 31 2020 20:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47013 * 2 1 4 4 C 1.52998 * 109.46742 * 120.00290 * 2 1 3 5 5 C 1.53008 * 109.46952 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46710 * 299.99978 * 5 4 2 7 7 C 1.52993 * 109.47431 * 59.99949 * 6 5 4 8 8 H 1.08999 * 109.47305 * 59.99629 * 7 6 5 9 9 O 1.42901 * 109.47145 * 179.97438 * 7 6 5 10 10 C 1.42895 * 113.99948 * 269.99781 * 9 7 6 11 11 C 1.50706 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46739 * 125.32773 * 359.69564 * 13 11 10 15 15 C 1.54115 * 106.62479 * 161.56332 * 14 13 11 16 16 H 1.09006 * 113.48413 * 151.38206 * 15 14 13 17 17 C 1.53962 * 109.46091 * 278.65444 * 15 14 13 18 18 N 1.46769 * 106.62961 * 138.17833 * 17 15 14 19 19 C 1.36936 * 125.34103 * 161.48923 * 18 17 15 20 20 H 1.07993 * 120.00008 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00011 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99971 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99993 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47244 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47264 * 119.99743 * 23 21 19 26 26 H 1.48503 * 109.46975 * 239.99668 * 23 21 19 27 27 C 1.46673 * 109.32341 * 341.48123 * 18 17 15 28 28 C 1.53729 * 107.93909 * 0.55166 * 27 18 17 29 29 H 1.08994 * 113.06072 * 140.00063 * 28 27 18 30 30 C 1.46635 * 125.32624 * 180.02562 * 13 11 10 31 31 C 1.53000 * 109.47006 * 299.99722 * 7 6 5 32 32 H 1.08994 * 109.47696 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47203 * 300.00253 * 1 2 3 34 34 H 1.09004 * 109.47147 * 59.99321 * 1 2 3 35 35 H 1.09000 * 109.47286 * 299.99414 * 4 2 1 36 36 H 1.08995 * 109.47868 * 59.99644 * 4 2 1 37 37 H 1.08999 * 109.46892 * 59.99655 * 5 4 2 38 38 H 1.08995 * 109.47210 * 179.97438 * 5 4 2 39 39 H 1.08995 * 109.46698 * 299.99472 * 6 5 4 40 40 H 1.09004 * 109.46716 * 180.02562 * 6 5 4 41 41 H 1.09001 * 109.46798 * 60.00190 * 10 9 7 42 42 H 1.09000 * 109.47736 * 300.00432 * 10 9 7 43 43 H 1.08997 * 110.01208 * 280.99136 * 14 13 11 44 44 H 1.08998 * 110.01284 * 42.37251 * 14 13 11 45 45 H 1.09001 * 110.02859 * 257.46912 * 17 15 14 46 46 H 1.09007 * 110.02517 * 18.83735 * 17 15 14 47 47 H 0.97000 * 119.99726 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.77711 * 240.92859 * 27 18 17 49 49 H 1.09001 * 109.77116 * 120.16727 * 27 18 17 50 50 H 1.09009 * 109.76019 * 300.45283 * 30 13 11 51 51 H 1.08994 * 109.76681 * 61.17116 * 30 13 11 52 52 H 1.09004 * 109.47147 * 179.97438 * 31 7 6 53 53 H 1.08994 * 109.47696 * 300.00286 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5694 -0.7223 -1.2495 8 1 3.9331 0.3053 -1.2498 9 8 4.0457 -1.3959 -2.4163 10 6 5.3053 -0.9162 -2.8909 11 6 5.7092 -1.6936 -4.1172 12 8 4.9890 -2.5715 -4.5430 13 7 6.8707 -1.4131 -4.7406 14 6 7.8242 -0.3754 -4.3316 15 6 9.1658 -0.7179 -5.0083 16 1 9.7868 0.1553 -5.2085 17 6 9.8933 -1.7983 -4.1873 18 7 10.4601 -2.7483 -5.1519 19 6 11.4645 -3.6407 -4.8880 20 1 11.9046 -3.6826 -3.9027 21 6 11.9179 -4.4910 -5.8873 22 7 11.3819 -4.4397 -7.0883 23 14 13.2885 -5.7080 -5.5274 24 1 13.7174 -5.5664 -4.1128 25 1 12.7974 -7.0898 -5.7604 26 1 14.4409 -5.4346 -6.4233 27 6 9.7818 -2.5919 -6.4430 28 6 8.7367 -1.4740 -6.2964 29 1 8.6827 -0.8230 -7.1689 30 6 7.3762 -2.0926 -5.9377 31 6 2.0394 -0.7217 -1.2492 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5140 -0.8900 35 1 1.6766 -0.2075 2.1392 36 1 1.6766 -1.7489 1.2493 37 1 3.9337 0.3056 1.2487 38 1 3.9333 -1.2354 2.1391 39 1 3.7157 -2.4710 -0.0001 40 1 5.1694 -1.4443 -0.0003 41 1 6.0593 -1.0457 -2.1145 42 1 5.2204 0.1410 -3.1421 43 1 7.4757 0.6028 -4.6628 44 1 7.9416 -0.3828 -3.2480 45 1 10.6900 -1.3454 -3.5972 46 1 9.1869 -2.3077 -3.5317 47 1 11.6984 -5.0341 -7.7864 48 1 9.2882 -3.5247 -6.7156 49 1 10.5071 -2.3203 -7.2100 50 1 7.4975 -3.1566 -5.7340 51 1 6.6784 -1.9527 -6.7633 52 1 1.6761 -0.2075 -2.1390 53 1 1.6756 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049092384.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:06 Heat of formation + Delta-G solvation = -90.931279 kcal Electronic energy + Delta-G solvation = -29914.026030 eV Core-core repulsion = 25977.576747 eV Total energy + Delta-G solvation = -3936.449283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.59907 -40.40083 -39.50450 -37.57417 -36.62680 -34.11307 -33.22256 -32.13845 -31.28036 -31.10603 -28.95037 -27.29458 -27.18988 -26.66891 -24.34359 -23.33950 -22.17532 -21.95407 -20.93555 -20.85395 -20.39002 -18.92409 -18.27699 -17.69313 -17.19703 -16.79113 -16.71442 -16.49724 -15.95258 -15.58669 -15.47252 -15.36641 -15.05726 -14.72572 -14.55710 -14.18443 -13.99701 -13.86162 -13.63143 -13.48303 -13.35350 -13.29131 -13.27136 -13.11570 -12.78223 -12.73805 -12.69359 -12.40878 -11.99304 -11.96834 -11.88794 -11.83869 -11.67699 -11.58221 -11.44929 -11.42001 -11.30962 -11.27256 -10.90292 -10.71361 -10.42424 -9.68308 -8.89448 -7.87192 -5.22204 1.43713 1.45120 1.50735 1.55042 1.67298 2.47685 2.82806 3.30479 3.37967 3.47416 3.66792 3.74993 3.79507 3.88365 3.93845 4.02794 4.11620 4.15025 4.21366 4.24350 4.25162 4.30274 4.31184 4.52647 4.53761 4.54839 4.59493 4.65507 4.78187 4.78631 4.82922 4.85109 4.92973 5.00076 5.02283 5.05488 5.10041 5.13137 5.14816 5.22986 5.30081 5.30788 5.38031 5.40315 5.41350 5.46972 5.58022 5.60399 5.77064 6.17244 6.20083 6.49926 7.08599 7.10212 7.78870 8.40020 9.23120 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.002181 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.215120 B =12834.660442 C =13380.714755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.143 4.143 7 C 0.086 3.914 8 H 0.086 0.914 9 O -0.393 6.393 10 C 0.059 3.941 11 C 0.517 3.483 12 O -0.584 6.584 13 N -0.609 5.609 14 C 0.110 3.890 15 C -0.094 4.094 16 H 0.133 0.867 17 C 0.136 3.864 18 N -0.625 5.625 19 C -0.240 4.240 20 H 0.083 0.917 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.289 1.289 27 C 0.196 3.804 28 C -0.109 4.109 29 H 0.120 0.880 30 C 0.127 3.873 31 C -0.110 4.110 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.048 0.952 46 H 0.008 0.992 47 H 0.246 0.754 48 H 0.002 0.998 49 H 0.017 0.983 50 H 0.027 0.973 51 H 0.066 0.934 52 H 0.065 0.935 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.073 18.303 15.907 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.181 4.181 7 C 0.029 3.971 8 H 0.104 0.896 9 O -0.312 6.312 10 C -0.021 4.021 11 C 0.307 3.693 12 O -0.463 6.463 13 N -0.343 5.343 14 C -0.012 4.012 15 C -0.113 4.113 16 H 0.151 0.849 17 C 0.011 3.989 18 N -0.352 5.352 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.224 1.224 26 H -0.216 1.216 27 C 0.071 3.929 28 C -0.129 4.129 29 H 0.138 0.862 30 C 0.004 3.996 31 C -0.148 4.148 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.055 0.945 48 H 0.020 0.980 49 H 0.035 0.965 50 H 0.045 0.955 51 H 0.084 0.916 52 H 0.084 0.916 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.523 17.527 15.574 29.271 hybrid contribution 1.031 -1.660 -0.471 2.010 sum -16.492 15.867 15.103 27.419 Atomic orbital electron populations 1.21815 0.94444 1.01803 1.02347 1.21081 0.96067 0.99770 0.93238 0.89771 1.21654 0.95319 1.00575 0.97897 1.21477 0.95760 1.01220 0.96487 1.22061 1.00926 0.99928 0.95225 1.22380 0.95035 0.96086 0.83581 0.89605 1.88025 1.35413 1.62021 1.45752 1.22277 0.88074 0.98376 0.93327 1.20759 0.79638 0.83642 0.85291 1.90695 1.53420 1.34555 1.67670 1.48293 1.20025 1.37266 1.28714 1.22306 0.86481 0.91272 1.01109 1.23008 0.96110 0.98493 0.93700 0.84924 1.21492 0.95367 0.89810 0.92192 1.44561 1.40704 1.41332 1.08565 1.19479 1.09620 1.11198 0.96621 0.89920 1.25669 1.02652 1.01986 0.95887 1.70192 1.45500 1.41542 1.02810 0.85017 0.78464 0.78043 0.77866 1.18840 1.22447 1.21609 1.20736 0.91326 0.93364 0.87518 1.22978 0.92469 0.97513 0.99898 0.86163 1.21680 0.95064 0.95522 0.87370 1.21657 0.93000 1.01122 0.99028 0.93272 0.91377 0.92500 0.90351 0.92815 0.90395 0.91152 0.93116 0.91618 0.88208 0.86546 0.87005 0.88294 0.93380 0.97454 0.94457 0.97996 0.96491 0.95486 0.91550 0.91610 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.08 -0.94 2.72 -10.79 -0.03 -0.97 16 3 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.12 -1.28 5.20 30.60 0.16 -1.12 16 5 C -0.11 -1.26 5.92 30.60 0.18 -1.08 16 6 C -0.14 -2.36 5.54 30.59 0.17 -2.19 16 7 C 0.09 1.50 2.61 30.59 0.08 1.58 16 8 H 0.09 1.06 7.78 -2.39 -0.02 1.04 16 9 O -0.39 -10.30 9.52 -129.94 -1.24 -11.53 16 10 C 0.06 1.26 5.26 71.24 0.37 1.63 16 11 C 0.52 16.73 7.91 87.66 0.69 17.42 16 12 O -0.58 -25.55 16.81 16.01 0.27 -25.28 16 13 N -0.61 -18.11 3.30 -817.32 -2.70 -20.81 16 14 C 0.11 2.22 5.77 86.71 0.50 2.72 16 15 C -0.09 -2.57 4.16 -9.26 -0.04 -2.61 16 16 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 17 C 0.14 5.16 6.49 86.65 0.56 5.72 16 18 N -0.63 -31.75 3.38 -697.58 -2.36 -34.11 16 19 C -0.24 -13.51 10.25 84.03 0.86 -12.65 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.99 5.48 84.86 0.47 -3.53 16 22 N -0.95 -58.11 10.25 21.65 0.22 -57.89 16 23 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.20 9.56 4.77 86.59 0.41 9.97 16 28 C -0.11 -3.72 4.01 -9.49 -0.04 -3.75 16 29 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 30 C 0.13 4.57 6.22 86.59 0.54 5.11 16 31 C -0.11 -1.85 4.85 30.59 0.15 -1.70 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 41 H 0.10 1.71 7.61 -2.39 -0.02 1.69 16 42 H 0.12 1.58 8.08 -2.39 -0.02 1.56 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.56 7.43 -2.39 -0.02 1.54 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.01 0.30 7.72 -2.38 -0.02 0.29 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.00 0.11 6.73 -2.39 -0.02 0.09 16 49 H 0.02 0.92 7.37 -2.39 -0.02 0.90 16 50 H 0.03 1.23 7.29 -2.38 -0.02 1.21 16 51 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 53 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -80.20 404.81 2.78 -77.42 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.85 Total: 9.96 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.70 Total: 13.70 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.83 Total: -112.81 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.97 Total: -36.81 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.20 2.78 -77.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049092384.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.510 kcal (2) G-P(sol) polarization free energy of solvation -80.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds