Wall clock time and date at job start Tue Mar 31 2020 20:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53000 * 109.46806 * 120.00129 * 2 1 3 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46963 * 299.99499 * 5 4 2 7 7 C 1.53005 * 109.46982 * 59.99993 * 6 5 4 8 8 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.46812 * 60.00328 * 7 6 5 10 10 C 1.42893 * 113.99968 * 89.99736 * 9 7 6 11 11 C 1.50704 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00064 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00144 * 180.02562 * 11 10 9 14 14 C 1.46670 * 125.34199 * 179.97438 * 13 11 10 15 15 C 1.53726 * 107.94404 * 180.54390 * 14 13 11 16 16 H 1.09000 * 112.55933 * 139.72105 * 15 14 13 17 17 C 1.53697 * 109.33848 * 265.60434 * 15 14 13 18 18 N 1.47884 * 107.36553 * 127.25095 * 17 15 14 19 19 C 1.36938 * 125.18090 * 181.07570 * 18 17 15 20 20 H 1.07997 * 119.99814 * 180.47258 * 19 18 17 21 21 C 1.38815 * 119.99745 * 0.47126 * 19 18 17 22 22 N 1.31612 * 120.00001 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47104 * 60.00096 * 23 21 19 25 25 H 1.48499 * 109.46860 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47058 * 299.99988 * 23 21 19 27 27 C 1.46749 * 109.48981 * 1.48309 * 18 17 15 28 28 C 1.53931 * 106.71835 * 341.24815 * 27 18 17 29 29 H 1.09002 * 113.00835 * 150.83408 * 28 27 18 30 30 C 1.46784 * 125.33680 * 359.69530 * 13 11 10 31 31 C 1.52997 * 109.47452 * 300.00142 * 7 6 5 32 32 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47844 * 299.99785 * 1 2 3 34 34 H 1.09001 * 109.47248 * 60.00478 * 1 2 3 35 35 H 1.09001 * 109.46741 * 300.00158 * 4 2 1 36 36 H 1.08992 * 109.47399 * 60.00048 * 4 2 1 37 37 H 1.08992 * 109.47514 * 59.99566 * 5 4 2 38 38 H 1.09004 * 109.47086 * 179.97438 * 5 4 2 39 39 H 1.09002 * 109.47067 * 300.00341 * 6 5 4 40 40 H 1.08992 * 109.47461 * 180.02562 * 6 5 4 41 41 H 1.09000 * 109.47553 * 300.00040 * 10 9 7 42 42 H 1.09006 * 109.47341 * 60.00274 * 10 9 7 43 43 H 1.08994 * 109.77287 * 300.16872 * 14 13 11 44 44 H 1.08996 * 109.76716 * 60.92306 * 14 13 11 45 45 H 1.09001 * 109.75497 * 247.19644 * 17 15 14 46 46 H 1.08992 * 109.76318 * 7.91227 * 17 15 14 47 47 H 0.97002 * 120.00200 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.01006 * 221.93251 * 27 18 17 49 49 H 1.08995 * 110.04557 * 100.58198 * 27 18 17 50 50 H 1.09008 * 110.02375 * 280.77447 * 30 13 11 51 51 H 1.08997 * 110.02738 * 42.18766 * 30 13 11 52 52 H 1.08992 * 109.47303 * 179.97438 * 31 7 6 53 53 H 1.09002 * 109.47153 * 299.99992 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4417 0.0004 7 6 3.5704 -0.7205 -1.2489 8 1 3.9345 -1.2339 -2.1389 9 8 4.0464 0.6270 -1.2487 10 6 5.3061 0.7985 -1.9011 11 6 5.7090 2.2495 -1.8419 12 8 4.9880 3.0572 -1.2952 13 7 6.8699 2.6497 -2.3973 14 6 7.3747 4.0268 -2.4084 15 6 8.7185 4.0325 -3.1549 16 1 8.8327 4.9008 -3.8039 17 6 9.8652 3.9000 -2.1401 18 7 10.7153 2.7725 -2.5794 19 6 11.8308 2.3235 -1.9242 20 1 12.3958 1.4951 -2.3253 21 6 12.2352 2.9331 -0.7444 22 7 11.5464 3.9423 -0.2554 23 14 13.7573 2.3210 0.1490 24 1 14.9383 2.4458 -0.7425 25 1 13.9727 3.1332 1.3734 26 1 13.5704 0.8970 0.5267 27 6 10.1843 2.2170 -3.8295 28 6 8.7240 2.6911 -3.9397 29 1 8.3862 2.7944 -4.9709 30 6 7.8301 1.7749 -3.0808 31 6 2.0404 -0.7210 -1.2493 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3635 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 1.6765 -0.2074 2.1392 36 1 1.6766 -1.7489 1.2493 37 1 3.9330 0.3069 1.2498 38 1 3.9333 -1.2342 2.1398 39 1 3.7174 -2.4695 0.0002 40 1 5.1704 -1.4418 0.0008 41 1 6.0602 0.1909 -1.4007 42 1 5.2213 0.4876 -2.9424 43 1 6.6650 4.6755 -2.9216 44 1 7.5196 4.3746 -1.3856 45 1 10.4437 4.8234 -2.1152 46 1 9.4590 3.6929 -1.1501 47 1 11.8292 4.3686 0.5687 48 1 10.2216 1.1280 -3.7994 49 1 10.7613 2.5864 -4.6773 50 1 8.4344 1.2396 -2.3484 51 1 7.3013 1.0665 -3.7185 52 1 1.6772 -0.2068 -2.1390 53 1 1.6774 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049092385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:10 Heat of formation + Delta-G solvation = -87.508020 kcal Electronic energy + Delta-G solvation = -30448.106635 eV Core-core repulsion = 26511.805795 eV Total energy + Delta-G solvation = -3936.300840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.55291 -40.47295 -39.47461 -37.24016 -36.50695 -34.12931 -33.17548 -32.24330 -31.20376 -31.07442 -28.94033 -27.29248 -27.04611 -26.83755 -24.37730 -23.45776 -22.19260 -21.85207 -20.85830 -20.61322 -20.43466 -18.86746 -18.18098 -17.56450 -17.40322 -16.86628 -16.49208 -16.34664 -16.16833 -15.58763 -15.53279 -15.35777 -14.88568 -14.65941 -14.49462 -14.26858 -13.99461 -13.73814 -13.59279 -13.39855 -13.26036 -13.20322 -13.10441 -13.04249 -12.73124 -12.72825 -12.69746 -12.65620 -12.30253 -12.02620 -11.87266 -11.83955 -11.81892 -11.52355 -11.45827 -11.35397 -11.20999 -10.91071 -10.86401 -10.67118 -10.40948 -9.68721 -8.86590 -7.84129 -5.18729 1.45309 1.47961 1.50183 1.54290 1.71342 2.50097 2.89176 3.32083 3.35695 3.54383 3.67774 3.77536 3.82336 3.86804 3.92052 3.96464 4.11546 4.18947 4.24972 4.28274 4.30922 4.32003 4.40116 4.53417 4.53931 4.58598 4.61944 4.70113 4.73970 4.82797 4.85365 4.90542 4.92812 4.93274 5.00210 5.06035 5.07322 5.11270 5.16542 5.22520 5.32640 5.35934 5.41896 5.43485 5.44586 5.49816 5.62775 5.64490 5.78450 6.20455 6.21016 6.49157 7.08222 7.10462 7.80639 8.43075 9.25937 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002640 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.987257 B =10604.633413 C =11456.494853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.043 0.957 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.140 4.140 7 C 0.080 3.920 8 H 0.086 0.914 9 O -0.380 6.380 10 C 0.056 3.944 11 C 0.519 3.481 12 O -0.578 6.578 13 N -0.608 5.608 14 C 0.126 3.874 15 C -0.113 4.113 16 H 0.114 0.886 17 C 0.197 3.803 18 N -0.626 5.626 19 C -0.236 4.236 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.975 3.025 24 H -0.275 1.275 25 H -0.301 1.301 26 H -0.276 1.276 27 C 0.140 3.860 28 C -0.091 4.091 29 H 0.139 0.861 30 C 0.111 3.889 31 C -0.104 4.104 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.004 0.996 46 H 0.009 0.991 47 H 0.243 0.757 48 H 0.052 0.948 49 H 0.030 0.970 50 H 0.053 0.947 51 H 0.115 0.885 52 H 0.065 0.935 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 -13.513 -7.572 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.062 0.938 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.177 4.177 7 C 0.023 3.977 8 H 0.104 0.896 9 O -0.299 6.299 10 C -0.023 4.023 11 C 0.309 3.691 12 O -0.457 6.457 13 N -0.342 5.342 14 C 0.003 3.997 15 C -0.133 4.133 16 H 0.132 0.868 17 C 0.072 3.928 18 N -0.352 5.352 19 C -0.365 4.365 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.803 3.197 24 H -0.201 1.201 25 H -0.228 1.228 26 H -0.202 1.202 27 C 0.014 3.986 28 C -0.111 4.111 29 H 0.157 0.843 30 C -0.011 4.011 31 C -0.142 4.142 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.027 0.973 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.133 0.867 52 H 0.084 0.916 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.376 -12.945 -6.986 24.328 hybrid contribution 1.513 0.460 1.218 1.996 sum -17.863 -12.486 -5.768 22.545 Atomic orbital electron populations 1.21799 0.94246 1.02407 1.01529 1.21035 0.95948 0.98994 0.95188 0.93841 1.21545 0.94607 1.01076 0.97223 1.21423 0.96525 0.99809 0.97950 1.22046 1.00555 1.00274 0.94850 1.22444 0.95452 0.81664 0.98170 0.89575 1.88051 1.34627 1.29063 1.78139 1.22221 0.88363 0.91367 1.00353 1.20654 0.79556 0.91450 0.77447 1.90679 1.53225 1.56597 1.45246 1.48296 1.19654 1.10091 1.56208 1.21672 0.94930 0.83591 0.99522 1.22993 0.93029 0.99943 0.97299 0.86811 1.20978 0.88815 0.89617 0.93360 1.44821 1.29232 1.36069 1.25105 1.19430 1.01533 1.12413 1.03100 0.89478 1.25632 1.02283 0.98924 0.99396 1.70189 1.41658 1.26170 1.22272 0.85204 0.79579 0.77395 0.77498 1.20104 1.22762 1.20223 1.21392 0.91849 0.97363 0.87947 1.23007 0.94850 0.93074 1.00140 0.84349 1.22259 0.90259 0.93304 0.95281 1.21696 0.92333 1.02125 0.98011 0.91238 0.93085 0.92844 0.92731 0.90273 0.94632 0.91807 0.88640 0.92408 0.89386 0.86813 0.90528 0.94526 0.97783 0.97310 0.94748 0.92954 0.95215 0.92831 0.86749 0.91577 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 2 C -0.09 -1.78 2.57 -10.79 -0.03 -1.80 16 3 H 0.04 1.17 7.68 -2.39 -0.02 1.15 16 4 C -0.11 -1.90 5.20 30.59 0.16 -1.74 16 5 C -0.12 -2.50 5.78 30.60 0.18 -2.33 16 6 C -0.14 -2.40 5.63 30.60 0.17 -2.23 16 7 C 0.08 1.42 2.92 30.60 0.09 1.51 16 8 H 0.09 1.09 7.78 -2.39 -0.02 1.07 16 9 O -0.38 -10.09 8.17 -129.94 -1.06 -11.16 16 10 C 0.06 1.35 5.26 71.24 0.37 1.72 16 11 C 0.52 17.56 7.91 87.66 0.69 18.26 16 12 O -0.58 -25.04 16.81 15.99 0.27 -24.77 16 13 N -0.61 -19.53 3.31 -817.01 -2.71 -22.24 16 14 C 0.13 4.40 6.24 86.59 0.54 4.94 16 15 C -0.11 -3.87 3.97 -9.49 -0.04 -3.90 16 16 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 17 C 0.20 9.51 4.83 86.35 0.42 9.93 16 18 N -0.63 -30.30 3.40 -694.67 -2.36 -32.66 16 19 C -0.24 -12.74 10.25 84.03 0.86 -11.88 16 20 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.07 -3.94 5.48 84.86 0.47 -3.48 16 22 N -0.95 -58.06 10.25 21.65 0.22 -57.84 16 23 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.14 4.87 6.37 86.65 0.55 5.42 16 28 C -0.09 -2.50 4.19 -9.26 -0.04 -2.54 16 29 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 30 C 0.11 2.95 5.87 86.71 0.51 3.46 16 31 C -0.10 -1.64 4.95 30.59 0.15 -1.49 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.03 1.00 7.68 -2.39 -0.02 0.98 16 38 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 41 H 0.09 1.93 7.87 -2.39 -0.02 1.91 16 42 H 0.11 1.83 7.82 -2.38 -0.02 1.82 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.04 1.54 7.42 -2.39 -0.02 1.52 16 45 H 0.00 0.22 7.51 -2.39 -0.02 0.20 16 46 H 0.01 0.49 6.48 -2.39 -0.02 0.48 16 47 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.05 1.70 7.95 -2.39 -0.02 1.68 16 49 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.05 1.74 7.72 -2.38 -0.02 1.72 16 51 H 0.11 1.96 7.61 -2.39 -0.02 1.94 16 52 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.69 402.80 2.97 -73.73 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.86 Total: 14.89 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.72 Total: 12.35 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.85 Total: -112.74 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.79 Total: -35.92 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.69 2.97 -73.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049092385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.783 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds