Wall clock time and date at job start Tue Mar 31 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 9 9 O 1.42896 * 109.47217 * 300.00085 * 7 6 5 10 10 C 1.42902 * 114.00187 * 269.99788 * 9 7 6 11 11 C 1.50695 * 109.47064 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00423 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46745 * 125.32981 * 359.69599 * 13 11 10 15 15 C 1.54111 * 106.62833 * 161.56260 * 14 13 11 16 16 H 1.09001 * 113.48438 * 151.38128 * 15 14 13 17 17 C 1.53966 * 109.45737 * 278.65380 * 15 14 13 18 18 N 1.46774 * 106.62275 * 138.17597 * 17 15 14 19 19 C 1.36941 * 125.33643 * 161.48191 * 18 17 15 20 20 H 1.08004 * 119.99829 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31613 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47133 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46964 * 119.99945 * 23 21 19 26 26 H 1.48502 * 109.47383 * 240.00353 * 23 21 19 27 27 C 1.46664 * 109.32719 * 341.48667 * 18 17 15 28 28 C 1.53720 * 107.94372 * 0.54148 * 27 18 17 29 29 H 1.09001 * 113.06386 * 140.00158 * 28 27 18 30 30 C 1.46641 * 125.32687 * 179.97438 * 13 11 10 31 31 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 32 32 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 34 34 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 37 37 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 38 38 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 39 39 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 40 40 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 41 41 H 1.09000 * 109.47214 * 300.00263 * 10 9 7 42 42 H 1.08997 * 109.46771 * 60.00219 * 10 9 7 43 43 H 1.09007 * 110.00450 * 280.99680 * 14 13 11 44 44 H 1.08997 * 110.00725 * 42.36403 * 14 13 11 45 45 H 1.08994 * 110.02550 * 257.46675 * 17 15 14 46 46 H 1.08998 * 110.02624 * 18.88749 * 17 15 14 47 47 H 0.97006 * 120.00644 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.77264 * 240.92239 * 27 18 17 49 49 H 1.08999 * 109.77761 * 120.16532 * 27 18 17 50 50 H 1.08994 * 109.76511 * 300.45688 * 30 13 11 51 51 H 1.08999 * 109.76151 * 61.18258 * 30 13 11 52 52 H 1.09001 * 109.47375 * 59.99908 * 31 7 6 53 53 H 1.09000 * 109.47140 * 179.97438 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 1 3.9328 -1.2356 2.1398 9 8 4.0462 0.6252 1.2499 10 6 5.3058 0.7959 1.9029 11 6 5.7095 2.2466 1.8441 12 8 4.9894 3.0548 1.2972 13 7 6.8710 2.6458 2.3992 14 6 7.8245 1.7723 3.0929 15 6 9.1660 2.5296 3.1354 16 1 9.7868 2.2657 3.9916 17 6 9.8936 2.3598 1.7892 18 7 10.4604 3.6705 1.4500 19 6 11.4651 3.8890 0.5455 20 1 11.9048 3.0570 0.0154 21 6 11.9183 5.1796 0.3098 22 7 11.3828 6.1934 0.9561 23 14 13.2893 5.4775 -0.9235 24 1 13.7176 4.1822 -1.5100 25 1 12.7983 6.3710 -2.0032 26 1 14.4416 6.1161 -0.2381 27 6 9.7820 4.7097 2.2317 28 6 8.7368 4.0232 3.1257 29 1 8.6826 4.4525 4.1261 30 6 7.3768 4.0222 2.4096 31 6 2.0395 -0.7214 1.2494 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8901 35 1 1.6767 -0.2076 -2.1392 36 1 1.6767 -1.7490 -1.2490 37 1 3.9334 -1.2354 -2.1389 38 1 3.9337 0.3057 -1.2486 39 1 3.7158 -2.4708 0.0005 40 1 5.1695 -1.4441 0.0006 41 1 5.2203 0.4848 2.9441 42 1 6.0596 0.1880 1.4028 43 1 7.4756 1.5692 4.1055 44 1 7.9418 0.8380 2.5439 45 1 10.6904 1.6223 1.8859 46 1 9.1873 2.0481 1.0198 47 1 11.6998 7.0954 0.7917 48 1 9.2886 5.4128 1.5607 49 1 10.5071 5.2377 2.8510 50 1 7.4986 4.3778 1.3865 51 1 6.6791 4.6673 2.9434 52 1 1.6758 -1.7490 1.2493 53 1 1.6761 -0.2079 2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049092386.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:15 Heat of formation + Delta-G solvation = -88.805043 kcal Electronic energy + Delta-G solvation = -30341.183643 eV Core-core repulsion = 26404.826560 eV Total energy + Delta-G solvation = -3936.357083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.59204 -40.46836 -39.47497 -37.22762 -36.61429 -34.10943 -33.16225 -32.11526 -31.28130 -31.18020 -29.01418 -27.29304 -27.18088 -26.65380 -24.32747 -23.44494 -22.17927 -21.95361 -20.89279 -20.65308 -20.40734 -18.93176 -18.14306 -17.62261 -17.15568 -16.80323 -16.69155 -16.46444 -16.10062 -15.63045 -15.47291 -15.35748 -14.86503 -14.72711 -14.56663 -14.13835 -14.02087 -13.70483 -13.53900 -13.48418 -13.29664 -13.24053 -13.12333 -13.06952 -12.78553 -12.72397 -12.69629 -12.68123 -12.29183 -11.98677 -11.89162 -11.80872 -11.68653 -11.58564 -11.46144 -11.43093 -11.20197 -10.90088 -10.85122 -10.71263 -10.38265 -9.67231 -8.89820 -7.87416 -5.22554 1.43486 1.45004 1.53267 1.54855 1.71184 2.47474 2.93278 3.30490 3.39286 3.48412 3.68647 3.78997 3.82738 3.88723 3.93409 3.93917 4.15608 4.21035 4.21836 4.28917 4.29835 4.30609 4.41697 4.54027 4.55319 4.59606 4.63284 4.71317 4.77960 4.82620 4.83155 4.91397 4.92753 4.93823 5.00414 5.02024 5.07375 5.12630 5.17436 5.22895 5.34289 5.36835 5.37815 5.43640 5.45339 5.46843 5.59932 5.64870 5.76626 6.19748 6.23345 6.52265 7.09551 7.11398 7.78584 8.39721 9.22912 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.002416 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.998891 B =11585.518571 C =12120.162638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.041 0.959 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.138 4.138 7 C 0.080 3.920 8 H 0.089 0.911 9 O -0.383 6.383 10 C 0.058 3.942 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.610 5.610 14 C 0.111 3.889 15 C -0.094 4.094 16 H 0.133 0.867 17 C 0.137 3.863 18 N -0.626 5.626 19 C -0.240 4.240 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.289 1.289 27 C 0.196 3.804 28 C -0.109 4.109 29 H 0.120 0.880 30 C 0.128 3.872 31 C -0.106 4.106 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.048 0.952 46 H 0.007 0.993 47 H 0.246 0.754 48 H 0.001 0.999 49 H 0.017 0.983 50 H 0.026 0.974 51 H 0.065 0.935 52 H 0.100 0.900 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.320 -21.243 6.740 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.060 0.940 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.176 4.176 7 C 0.023 3.977 8 H 0.107 0.893 9 O -0.303 6.303 10 C -0.022 4.022 11 C 0.307 3.693 12 O -0.463 6.463 13 N -0.344 5.344 14 C -0.011 4.011 15 C -0.113 4.113 16 H 0.150 0.850 17 C 0.012 3.988 18 N -0.352 5.352 19 C -0.370 4.370 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.224 1.224 26 H -0.216 1.216 27 C 0.071 3.929 28 C -0.129 4.129 29 H 0.138 0.862 30 C 0.004 3.996 31 C -0.143 4.143 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.055 0.945 48 H 0.020 0.980 49 H 0.035 0.965 50 H 0.044 0.956 51 H 0.084 0.916 52 H 0.118 0.882 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.771 -20.567 6.236 27.887 hybrid contribution 1.138 1.291 -1.142 2.065 sum -16.633 -19.276 5.094 25.964 Atomic orbital electron populations 1.21803 0.94409 1.02396 1.01440 1.21032 0.95854 0.98965 0.95353 0.93995 1.21547 0.94871 1.01019 0.97081 1.21425 0.96320 0.99835 0.98149 1.22039 1.00808 1.00151 0.94566 1.22435 0.95224 0.81655 0.98345 0.89305 1.88064 1.34910 1.29145 1.78138 1.22255 0.88452 0.90931 1.00523 1.20793 0.79570 0.91630 0.77324 1.90696 1.53388 1.56800 1.45366 1.48305 1.20100 1.09864 1.56126 1.22291 0.86471 0.93358 0.98975 1.23009 0.96138 0.93484 0.98688 0.84958 1.21490 0.95351 0.87825 0.94169 1.44565 1.40703 1.02784 1.47136 1.19480 1.09642 0.93030 1.14805 0.89933 1.25660 1.02629 0.95554 1.02270 1.70189 1.45506 0.98419 1.45947 0.85023 0.78483 0.77884 0.78035 1.18848 1.22445 1.21560 1.20729 0.91320 0.89635 0.91234 1.22980 0.92509 0.97686 0.99719 0.86193 1.21658 0.95018 0.83816 0.99061 1.21702 0.92687 1.02059 0.97827 0.91184 0.92947 0.93204 0.92933 0.90256 0.91720 0.94690 0.88666 0.91876 0.86700 0.88450 0.87063 0.88338 0.93383 0.97473 0.94451 0.98035 0.96502 0.95563 0.91647 0.88179 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 71.98 0.66 -1.48 16 2 C -0.09 -1.74 2.57 -10.79 -0.03 -1.76 16 3 H 0.04 1.12 7.68 -2.39 -0.02 1.10 16 4 C -0.11 -1.82 5.20 30.59 0.16 -1.66 16 5 C -0.12 -2.31 5.78 30.59 0.18 -2.14 16 6 C -0.14 -2.04 5.63 30.59 0.17 -1.87 16 7 C 0.08 1.27 2.92 30.59 0.09 1.36 16 8 H 0.09 0.91 7.78 -2.39 -0.02 0.89 16 9 O -0.38 -9.52 8.17 -129.94 -1.06 -10.58 16 10 C 0.06 1.21 5.26 71.23 0.37 1.58 16 11 C 0.52 16.60 7.91 87.66 0.69 17.30 16 12 O -0.58 -25.34 16.81 16.00 0.27 -25.08 16 13 N -0.61 -18.13 3.30 -817.32 -2.70 -20.83 16 14 C 0.11 2.24 5.77 86.71 0.50 2.74 16 15 C -0.09 -2.58 4.16 -9.26 -0.04 -2.62 16 16 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 17 C 0.14 5.19 6.49 86.65 0.56 5.75 16 18 N -0.63 -31.86 3.38 -697.61 -2.36 -34.22 16 19 C -0.24 -13.56 10.25 84.03 0.86 -12.70 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.95 5.48 84.86 0.47 -3.48 16 22 N -0.95 -58.20 10.25 21.65 0.22 -57.98 16 23 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 C 0.20 9.61 4.77 86.59 0.41 10.02 16 28 C -0.11 -3.75 4.02 -9.49 -0.04 -3.78 16 29 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 30 C 0.13 4.62 6.21 86.59 0.54 5.16 16 31 C -0.11 -1.55 4.94 30.60 0.15 -1.40 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.03 0.93 7.68 -2.39 -0.02 0.91 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.94 7.87 -2.38 -0.02 0.92 16 41 H 0.12 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.10 1.64 7.61 -2.39 -0.02 1.62 16 43 H 0.11 1.41 8.14 -2.38 -0.02 1.40 16 44 H 0.10 1.56 7.43 -2.39 -0.02 1.54 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.01 0.30 7.72 -2.39 -0.02 0.28 16 47 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 48 H 0.00 0.08 6.74 -2.39 -0.02 0.07 16 49 H 0.02 0.92 7.37 -2.39 -0.02 0.90 16 50 H 0.03 1.20 7.29 -2.39 -0.02 1.18 16 51 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -80.66 402.74 2.97 -77.69 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.86 Total: 11.41 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.71 Total: 11.02 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.84 Total: -113.03 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.79 Total: -35.66 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.66 2.97 -77.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049092386.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.113 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds