Wall clock time and date at job start Tue Mar 31 2020 19:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46862 * 2 1 4 4 C 1.53004 * 109.46959 * 119.99881 * 2 1 3 5 5 C 1.52998 * 109.47070 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46848 * 300.00106 * 5 4 2 7 7 C 1.52995 * 109.47504 * 59.99943 * 6 5 4 8 8 C 1.52998 * 109.47115 * 299.99893 * 7 6 5 9 9 H 1.08997 * 109.47333 * 299.99956 * 8 7 6 10 10 O 1.42902 * 109.47296 * 179.97438 * 8 7 6 11 11 C 1.42899 * 113.99453 * 90.00046 * 10 8 7 12 12 C 1.50703 * 109.46802 * 180.02562 * 11 10 8 13 13 O 1.21277 * 120.00019 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99681 * 179.97438 * 12 11 10 15 15 C 1.46769 * 125.34195 * 0.02562 * 14 12 11 16 16 C 1.53971 * 106.62930 * 198.51667 * 15 14 12 17 17 H 1.09002 * 113.01755 * 94.27635 * 16 15 14 18 18 C 1.53926 * 109.91794 * 221.55598 * 16 15 14 19 19 N 1.47612 * 106.28249 * 80.85308 * 18 16 15 20 20 C 1.36944 * 125.44040 * 198.70112 * 19 18 16 21 21 H 1.08003 * 119.99777 * 180.81896 * 20 19 18 22 22 C 1.38811 * 119.99912 * 0.81784 * 20 19 18 23 23 N 1.31615 * 120.00295 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99880 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47401 * 89.99993 * 24 22 20 26 26 H 1.48509 * 109.47095 * 210.00299 * 24 22 20 27 27 H 1.48501 * 109.47190 * 330.00186 * 24 22 20 28 28 C 1.46641 * 109.22675 * 19.40962 * 19 18 16 29 29 C 1.53686 * 108.00986 * 358.47507 * 28 19 18 30 30 H 1.09004 * 112.55893 * 105.90407 * 29 28 19 31 31 C 1.46672 * 125.33749 * 179.97438 * 14 12 11 32 32 H 1.08994 * 109.46862 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47176 * 300.00417 * 1 2 3 34 34 H 1.09003 * 109.46784 * 60.00137 * 1 2 3 35 35 H 1.09000 * 109.46933 * 299.99851 * 4 2 1 36 36 H 1.08997 * 109.47161 * 59.99823 * 4 2 1 37 37 H 1.08997 * 109.47333 * 59.99855 * 5 4 2 38 38 H 1.08994 * 109.46957 * 179.97438 * 5 4 2 39 39 H 1.08997 * 109.46984 * 180.02562 * 6 5 4 40 40 H 1.09004 * 109.46836 * 299.99625 * 6 5 4 41 41 H 1.09000 * 109.47066 * 180.02562 * 7 6 5 42 42 H 1.08997 * 109.46985 * 60.00062 * 7 6 5 43 43 H 1.08999 * 109.47540 * 60.00168 * 11 10 8 44 44 H 1.09002 * 109.47600 * 299.99943 * 11 10 8 45 45 H 1.08994 * 110.03381 * 79.22230 * 15 14 12 46 46 H 1.09003 * 110.02702 * 317.80043 * 15 14 12 47 47 H 1.09000 * 110.00881 * 201.20371 * 18 16 15 48 48 H 1.08999 * 110.00929 * 322.56835 * 18 16 15 49 49 H 0.96996 * 120.00322 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.76021 * 238.83636 * 28 19 18 51 51 H 1.09004 * 109.76339 * 118.12210 * 28 19 18 52 52 H 1.09005 * 109.77107 * 59.83321 * 31 14 12 53 53 H 1.08997 * 109.78728 * 299.09014 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5706 -0.7205 -1.2489 8 6 2.0406 -0.7210 -1.2492 9 1 1.6776 -1.7487 -1.2494 10 8 1.5642 -0.0469 -2.4157 11 6 1.3711 -0.9030 -3.5435 12 6 0.8708 -0.0913 -4.7105 13 8 0.6964 1.1027 -4.5883 14 7 0.6172 -0.6922 -5.8899 15 6 0.7859 -2.1236 -6.1670 16 6 0.8417 -2.2723 -7.6985 17 1 1.8591 -2.2753 -8.0896 18 6 0.0252 -3.5016 -8.1361 19 7 -1.3874 -3.0738 -8.1581 20 6 -2.4710 -3.9108 -8.1361 21 1 -3.4701 -3.5017 -8.1686 22 6 -2.2854 -5.2850 -8.0723 23 7 -1.0679 -5.7835 -8.0323 24 14 -3.7635 -6.4267 -8.0431 25 1 -4.1348 -6.7915 -9.4339 26 1 -3.4243 -7.6563 -7.2825 27 1 -4.9066 -5.7400 -7.3896 28 6 -1.4477 -1.6101 -8.2242 29 6 -0.0075 -1.0740 -8.2067 30 1 0.3160 -0.7124 -9.1829 31 6 0.1285 -0.0184 -7.0976 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.6767 -0.2074 2.1392 36 1 1.6767 -1.7489 1.2493 37 1 3.9330 0.3070 1.2498 38 1 3.9333 -1.2341 2.1398 39 1 5.1705 -1.4416 0.0008 40 1 3.7175 -2.4695 0.0002 41 1 3.9339 -1.2344 -2.1388 42 1 3.9335 0.3073 -1.2487 43 1 0.6394 -1.6718 -3.2950 44 1 2.3176 -1.3743 -3.8083 45 1 -0.0602 -2.6833 -5.7683 46 1 1.7143 -2.4829 -5.7231 47 1 0.3499 -3.8332 -9.1224 48 1 0.1475 -4.3075 -7.4124 49 1 -0.9382 -6.7437 -7.9873 50 1 -1.9949 -1.2246 -7.3639 51 1 -1.9443 -1.3029 -9.1446 52 1 0.8389 0.7492 -7.4046 53 1 -0.8423 0.4359 -6.8994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049093185.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:27 Heat of formation + Delta-G solvation = -86.664623 kcal Electronic energy + Delta-G solvation = -30333.752449 eV Core-core repulsion = 26397.488182 eV Total energy + Delta-G solvation = -3936.264267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.58763 -40.49325 -39.51179 -37.32605 -36.54159 -34.15165 -33.51395 -31.86972 -31.58384 -30.95218 -28.97336 -27.22693 -27.07540 -26.72394 -24.39361 -23.26894 -22.23438 -21.84938 -21.00848 -20.83225 -20.37689 -18.93295 -18.34625 -17.50071 -17.43928 -16.92432 -16.72307 -16.40776 -15.75553 -15.64922 -15.48768 -15.18594 -15.16726 -14.55888 -14.46231 -14.33343 -14.11767 -13.86464 -13.66429 -13.58126 -13.35416 -13.23691 -13.16098 -13.06854 -12.79559 -12.74160 -12.68325 -12.48373 -12.02455 -12.00234 -11.87351 -11.78455 -11.74933 -11.55005 -11.50758 -11.37988 -11.32836 -11.20921 -10.90197 -10.68410 -10.40001 -9.70599 -8.85705 -7.78995 -5.19007 1.47506 1.48394 1.48772 1.57306 1.65997 2.50369 2.79229 3.30283 3.34003 3.55224 3.64656 3.74235 3.76589 3.81159 3.95579 3.98975 4.06741 4.16323 4.21800 4.27562 4.27685 4.29408 4.30797 4.47992 4.49144 4.53388 4.55990 4.60314 4.75136 4.77152 4.84924 4.89810 4.91696 4.97386 5.02783 5.05308 5.10620 5.17283 5.17614 5.20690 5.28620 5.30405 5.32855 5.36582 5.40367 5.49298 5.53800 5.61742 5.84286 6.14123 6.30795 6.43166 7.04782 7.13883 7.80334 8.42239 9.25054 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.002661 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.415003 B =10518.908982 C =11476.050534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.140 4.140 8 C 0.087 3.913 9 H 0.070 0.930 10 O -0.380 6.380 11 C 0.054 3.946 12 C 0.525 3.475 13 O -0.572 6.572 14 N -0.608 5.608 15 C 0.117 3.883 16 C -0.109 4.109 17 H 0.120 0.880 18 C 0.175 3.825 19 N -0.622 5.622 20 C -0.240 4.240 21 H 0.074 0.926 22 C -0.058 4.058 23 N -0.943 5.943 24 Si 0.973 3.027 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.275 1.275 28 C 0.138 3.862 29 C -0.095 4.095 30 H 0.123 0.877 31 C 0.124 3.876 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.099 0.901 47 H -0.003 1.003 48 H 0.071 0.929 49 H 0.248 0.752 50 H 0.016 0.984 51 H 0.023 0.977 52 H 0.080 0.920 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.857 7.981 15.225 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.178 4.178 8 C 0.030 3.970 9 H 0.088 0.912 10 O -0.299 6.299 11 C -0.025 4.025 12 C 0.314 3.686 13 O -0.451 6.451 14 N -0.342 5.342 15 C -0.006 4.006 16 C -0.129 4.129 17 H 0.138 0.862 18 C 0.050 3.950 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.092 0.908 22 C -0.251 4.251 23 N -0.592 5.592 24 Si 0.802 3.198 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.200 1.200 28 C 0.013 3.987 29 C -0.114 4.114 30 H 0.141 0.859 31 C 0.001 3.999 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.015 0.985 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.041 0.959 52 H 0.098 0.902 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.677 8.645 15.398 21.170 hybrid contribution -1.134 -0.949 -0.546 1.576 sum 10.544 7.696 14.852 19.773 Atomic orbital electron populations 1.21760 0.95138 1.01814 1.01520 1.21197 0.95835 0.99927 0.93461 0.91575 1.21576 0.95946 1.00831 0.96184 1.21581 0.95088 1.01013 0.98187 1.21496 1.01021 0.99365 0.93283 1.22033 0.94745 1.01574 0.99421 1.22434 0.94008 0.96136 0.84416 0.91197 1.87995 1.86957 1.35043 1.19941 1.22213 1.02529 0.92215 0.85570 1.20411 0.77518 0.87544 0.83101 1.90673 1.54209 1.16857 1.83391 1.48302 1.64954 1.10191 1.10772 1.22062 1.02083 0.79863 0.96561 1.23125 1.00228 0.95649 0.93894 0.86189 1.21336 0.81716 0.93841 0.98108 1.44713 1.02684 1.00717 1.86676 1.19345 0.86651 0.88092 1.42815 0.90841 1.25479 0.99217 0.97837 1.02583 1.70034 1.19880 1.11139 1.58133 0.85162 0.78950 0.78411 0.77281 1.21589 1.21709 1.20035 1.21354 0.95315 0.84482 0.97560 1.22738 0.94965 0.94589 0.99078 0.85914 1.21756 0.99413 0.95027 0.83691 0.92526 0.91570 0.94278 0.90500 0.91262 0.92077 0.90393 0.90718 0.91298 0.91547 0.92055 0.89246 0.87858 0.92843 0.88274 0.98542 0.91057 0.94192 0.96629 0.95880 0.90193 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.05 71.98 0.65 -2.24 16 2 C -0.09 -1.58 2.46 -10.79 -0.03 -1.61 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -1.42 5.20 30.59 0.16 -1.26 16 5 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 6 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 7 C -0.14 -2.36 5.54 30.59 0.17 -2.19 16 8 C 0.09 1.75 2.04 30.59 0.06 1.81 16 9 H 0.07 1.27 7.79 -2.39 -0.02 1.26 16 10 O -0.38 -10.45 8.85 -129.94 -1.15 -11.60 16 11 C 0.05 1.37 5.26 71.24 0.37 1.74 16 12 C 0.52 17.08 7.91 87.66 0.69 17.78 16 13 O -0.57 -23.13 16.81 16.02 0.27 -22.87 16 14 N -0.61 -18.68 3.31 -817.40 -2.71 -21.39 16 15 C 0.12 3.48 5.88 86.66 0.51 3.99 16 16 C -0.11 -3.47 4.12 -9.32 -0.04 -3.50 16 17 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 18 C 0.17 7.75 4.94 86.48 0.43 8.18 16 19 N -0.62 -30.32 3.39 -695.65 -2.36 -32.68 16 20 C -0.24 -13.05 10.25 84.03 0.86 -12.19 16 21 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 23 N -0.94 -52.91 10.15 21.65 0.22 -52.69 16 24 Si 0.97 44.39 29.55 68.60 2.03 46.42 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.14 5.50 6.60 86.58 0.57 6.07 16 29 C -0.09 -2.91 4.01 -9.49 -0.04 -2.94 16 30 H 0.12 3.18 8.14 -2.38 -0.02 3.16 16 31 C 0.12 3.70 6.23 86.59 0.54 4.24 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.99 7.68 -2.39 -0.02 0.97 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 44 H 0.10 2.03 7.60 -2.39 -0.02 2.01 16 45 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 46 H 0.10 2.31 7.61 -2.39 -0.02 2.29 16 47 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.07 3.57 5.98 -2.39 -0.01 3.56 16 49 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 50 H 0.02 0.65 7.29 -2.39 -0.02 0.64 16 51 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 53 H 0.06 1.86 7.43 -2.39 -0.02 1.85 16 Total: -1.00 -68.56 403.58 2.90 -65.66 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.86 Total: 16.44 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.75 Total: 12.71 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -4.85 Total: -106.76 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.88 Total: -34.46 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.56 2.90 -65.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049093185.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.008 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds