Wall clock time and date at job start Tue Mar 31 2020 19:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46859 * 2 1 4 4 C 1.52995 * 109.46884 * 240.00094 * 2 1 3 5 5 C 1.53004 * 109.47173 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47023 * 59.99755 * 5 4 2 7 7 C 1.52995 * 109.47345 * 300.00139 * 6 5 4 8 8 C 1.52999 * 109.47077 * 119.99994 * 2 1 3 9 9 H 1.09009 * 109.46954 * 59.99944 * 8 2 1 10 10 O 1.42895 * 109.47287 * 300.00423 * 8 2 1 11 11 C 1.42896 * 114.00209 * 150.00276 * 10 8 2 12 12 C 1.50697 * 109.47421 * 179.97438 * 11 10 8 13 13 O 1.21291 * 119.99783 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00310 * 179.97438 * 12 11 10 15 15 C 1.46665 * 125.33176 * 179.97438 * 14 12 11 16 16 C 1.53677 * 107.96552 * 179.31472 * 15 14 12 17 17 H 1.09002 * 112.77290 * 106.01907 * 16 15 14 18 18 C 1.53987 * 109.29391 * 232.33973 * 16 15 14 19 19 N 1.47726 * 106.19183 * 83.65702 * 18 16 15 20 20 C 1.36932 * 125.01170 * 197.99813 * 19 18 16 21 21 H 1.08007 * 119.99539 * 179.24256 * 20 19 18 22 22 C 1.38803 * 120.00405 * 359.23659 * 20 19 18 23 23 N 1.31625 * 120.00060 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00324 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47139 * 59.99862 * 24 22 20 26 26 H 1.48498 * 109.47138 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46706 * 299.99786 * 24 22 20 28 28 C 1.46665 * 109.64467 * 17.33541 * 19 18 16 29 29 C 1.53665 * 107.97274 * 359.95594 * 28 19 18 30 30 H 1.08998 * 113.31992 * 106.32931 * 29 28 19 31 31 C 1.46752 * 125.33182 * 0.02780 * 14 12 11 32 32 H 1.09004 * 109.47478 * 299.99966 * 1 2 3 33 33 H 1.09003 * 109.47321 * 59.99616 * 1 2 3 34 34 H 1.08996 * 109.47594 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47447 * 300.00150 * 4 2 1 36 36 H 1.09003 * 109.47427 * 60.00092 * 4 2 1 37 37 H 1.08999 * 109.47160 * 180.02562 * 5 4 2 38 38 H 1.08997 * 109.46624 * 299.99939 * 5 4 2 39 39 H 1.09000 * 109.46778 * 60.00463 * 6 5 4 40 40 H 1.08994 * 109.46872 * 180.02562 * 6 5 4 41 41 H 1.08997 * 109.47295 * 300.00425 * 7 6 5 42 42 H 1.08995 * 109.47371 * 179.97438 * 7 6 5 43 43 H 1.08999 * 109.47724 * 59.99349 * 11 10 8 44 44 H 1.08998 * 109.46957 * 299.99342 * 11 10 8 45 45 H 1.09002 * 109.76444 * 59.69402 * 15 14 12 46 46 H 1.08990 * 109.78248 * 298.95303 * 15 14 12 47 47 H 1.09007 * 110.01329 * 202.36437 * 18 16 15 48 48 H 1.09000 * 110.01861 * 323.75533 * 18 16 15 49 49 H 0.96992 * 120.00145 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.76667 * 240.32025 * 28 19 18 51 51 H 1.09005 * 109.76235 * 119.58363 * 28 19 18 52 52 H 1.08997 * 110.02007 * 317.72988 * 31 14 12 53 53 H 1.08999 * 110.02099 * 79.12386 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5699 -0.7218 -1.2490 6 6 4.0794 -1.4434 0.0003 7 6 3.5695 -0.7222 1.2495 8 6 2.0400 -0.7212 1.2492 9 1 1.6766 -1.7490 1.2492 10 8 1.5636 -0.0477 2.4160 11 6 1.3699 -0.9043 3.5433 12 6 0.8697 -0.0930 4.7106 13 8 0.6965 1.1013 4.5892 14 7 0.6147 -0.6946 5.8894 15 6 0.1268 -0.0209 7.0974 16 6 -0.0417 -1.0817 8.1964 17 1 0.7359 -1.0271 8.9583 18 6 -1.4614 -0.9840 8.7846 19 7 -2.3353 -1.7622 7.8829 20 6 -3.6996 -1.6578 7.8279 21 1 -4.2593 -2.2594 7.1269 22 6 -4.3631 -0.7791 8.6729 23 7 -3.6810 -0.0457 9.5269 24 14 -6.2243 -0.6372 8.5983 25 1 -6.8338 -1.9566 8.9025 26 1 -6.6848 0.3630 9.5946 27 1 -6.6335 -0.2046 7.2379 28 6 -1.5180 -2.6488 7.0482 29 6 -0.0448 -2.4325 7.4278 30 1 0.3764 -3.2535 8.0079 31 6 0.7828 -2.1260 6.1656 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.9332 -1.2352 -2.1392 38 1 3.9336 0.3057 -1.2488 39 1 3.7157 -2.4709 0.0000 40 1 5.1694 -1.4434 0.0007 41 1 3.9331 0.3053 1.2497 42 1 3.9321 -1.2365 2.1394 43 1 2.3162 -1.3761 3.8080 44 1 0.6380 -1.6726 3.2942 45 1 -0.8330 0.4534 6.8927 46 1 0.8484 0.7304 7.4177 47 1 -1.4821 -1.4191 9.7838 48 1 -1.7779 0.0583 8.8244 49 1 -4.1446 0.5687 10.1172 50 1 -1.6672 -2.4057 5.9962 51 1 -1.7969 -3.6868 7.2299 52 1 0.4134 -2.7141 5.3255 53 1 1.8342 -2.3505 6.3450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049093186.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:31 Heat of formation + Delta-G solvation = -88.540984 kcal Electronic energy + Delta-G solvation = -30371.792096 eV Core-core repulsion = 26435.446464 eV Total energy + Delta-G solvation = -3936.345632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56722 -40.47494 -39.46849 -37.30339 -36.55509 -34.10710 -33.50645 -32.08895 -31.27024 -30.99836 -29.13172 -27.25056 -27.08184 -26.56056 -24.41042 -23.25692 -22.22412 -21.84229 -20.98343 -20.84533 -20.37817 -18.92043 -18.32999 -17.66964 -17.32653 -16.82170 -16.68779 -16.53108 -15.71120 -15.62049 -15.51952 -15.15479 -15.09675 -14.55709 -14.39961 -14.28297 -14.08853 -13.89267 -13.68744 -13.50639 -13.43162 -13.29544 -13.12952 -13.00823 -12.81433 -12.78354 -12.70391 -12.47414 -12.07613 -11.99731 -11.87797 -11.77277 -11.70532 -11.52598 -11.48244 -11.40609 -11.32733 -11.18445 -10.89252 -10.69953 -10.37481 -9.66643 -8.87037 -7.82279 -5.21294 1.42904 1.46250 1.51854 1.52226 1.69561 2.47750 2.85333 3.30296 3.39708 3.48029 3.68624 3.74174 3.77739 3.87309 3.96200 4.00367 4.10237 4.18598 4.24756 4.26041 4.29076 4.30990 4.31936 4.50417 4.53796 4.54362 4.57370 4.61001 4.75683 4.81036 4.86585 4.90579 4.94428 4.98010 5.04698 5.06689 5.11729 5.15694 5.19112 5.25277 5.29770 5.32016 5.36397 5.37845 5.41338 5.46977 5.55163 5.59275 5.82161 6.18862 6.26018 6.51871 7.09589 7.11112 7.79517 8.40379 9.22731 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.002519 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.352356 B =11113.515088 C =11924.485438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.059 0.941 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.140 4.140 8 C 0.089 3.911 9 H 0.078 0.922 10 O -0.388 6.388 11 C 0.060 3.940 12 C 0.516 3.484 13 O -0.584 6.584 14 N -0.608 5.608 15 C 0.130 3.870 16 C -0.109 4.109 17 H 0.122 0.878 18 C 0.178 3.822 19 N -0.626 5.626 20 C -0.240 4.240 21 H 0.078 0.922 22 C -0.067 4.067 23 N -0.949 5.949 24 Si 0.975 3.025 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.283 1.283 28 C 0.139 3.861 29 C -0.093 4.093 30 H 0.136 0.864 31 C 0.108 3.892 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.024 0.976 46 H 0.063 0.937 47 H -0.002 1.002 48 H 0.051 0.949 49 H 0.246 0.754 50 H 0.015 0.985 51 H 0.033 0.967 52 H 0.096 0.904 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.225 -9.289 -18.569 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.178 4.178 8 C 0.032 3.968 9 H 0.096 0.904 10 O -0.307 6.307 11 C -0.019 4.019 12 C 0.306 3.694 13 O -0.464 6.464 14 N -0.342 5.342 15 C 0.007 3.993 16 C -0.129 4.129 17 H 0.140 0.860 18 C 0.053 3.947 19 N -0.352 5.352 20 C -0.369 4.369 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.804 3.196 25 H -0.199 1.199 26 H -0.220 1.220 27 H -0.209 1.209 28 C 0.014 3.986 29 C -0.112 4.112 30 H 0.154 0.846 31 C -0.013 4.013 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.131 0.869 44 H 0.117 0.883 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.016 0.984 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.033 0.967 51 H 0.051 0.949 52 H 0.114 0.886 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.955 -8.342 -18.630 27.856 hybrid contribution -1.628 0.678 0.602 1.863 sum 17.327 -7.664 -18.027 26.153 Atomic orbital electron populations 1.21757 0.95290 1.01981 1.01219 1.21206 0.95699 0.99811 0.93926 0.92212 1.21563 0.95935 1.00958 0.95935 1.21592 0.95078 1.00883 0.98464 1.21486 1.00975 0.99506 0.92998 1.22034 0.94736 1.01388 0.99648 1.22413 0.93969 0.96311 0.84094 0.90361 1.88025 1.86997 1.35453 1.20215 1.22235 1.02913 0.91891 0.84881 1.20760 0.77569 0.87726 0.83385 1.90696 1.54358 1.17865 1.83444 1.48297 1.64795 1.10907 1.10238 1.21581 0.97389 0.95754 0.84609 1.23055 0.98952 0.94148 0.96776 0.86010 1.21316 0.86026 0.96762 0.90582 1.44750 1.02137 1.45486 1.42826 1.19369 0.82455 1.18826 1.16249 0.90418 1.25597 1.02393 0.99311 0.98664 1.70114 1.34590 1.29217 1.25888 0.85196 0.80076 0.77435 0.76918 1.19945 1.21993 1.20928 1.21336 0.90536 0.93467 0.93287 1.22892 0.94209 0.97925 0.96219 0.84577 1.22365 1.01702 0.79295 0.97979 0.94746 0.91907 0.91992 0.90770 0.90866 0.90311 0.92537 0.90722 0.90773 0.92672 0.91016 0.86942 0.88309 0.95729 0.91914 0.98374 0.93085 0.94433 0.96730 0.94928 0.88605 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.05 71.98 0.65 -2.28 16 2 C -0.09 -1.59 2.46 -10.80 -0.03 -1.62 16 3 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -1.29 5.20 30.59 0.16 -1.13 16 5 C -0.12 -1.29 5.92 30.60 0.18 -1.11 16 6 C -0.11 -1.15 5.92 30.59 0.18 -0.97 16 7 C -0.14 -2.10 5.54 30.58 0.17 -1.93 16 8 C 0.09 1.63 2.04 30.58 0.06 1.69 16 9 H 0.08 1.14 7.79 -2.38 -0.02 1.12 16 10 O -0.39 -10.44 8.85 -129.94 -1.15 -11.59 16 11 C 0.06 1.36 5.26 71.24 0.37 1.74 16 12 C 0.52 17.43 7.91 87.66 0.69 18.12 16 13 O -0.58 -26.43 16.81 15.97 0.27 -26.17 16 14 N -0.61 -18.92 3.31 -817.48 -2.71 -21.62 16 15 C 0.13 4.87 6.25 86.58 0.54 5.41 16 16 C -0.11 -3.74 4.04 -9.40 -0.04 -3.78 16 17 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 18 C 0.18 8.60 4.85 86.48 0.42 9.02 16 19 N -0.63 -31.81 3.40 -695.23 -2.37 -34.18 16 20 C -0.24 -13.63 10.25 84.03 0.86 -12.77 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 22 C -0.07 -3.88 5.48 84.86 0.47 -3.42 16 23 N -0.95 -57.70 10.16 21.65 0.22 -57.48 16 24 Si 0.98 46.95 29.55 68.60 2.03 48.97 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 28 C 0.14 5.28 6.67 86.57 0.58 5.85 16 29 C -0.09 -2.55 4.05 -9.40 -0.04 -2.59 16 30 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 31 C 0.11 2.27 5.81 86.67 0.50 2.78 16 32 H 0.03 0.91 7.68 -2.38 -0.02 0.89 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 0.95 7.87 -2.39 -0.02 0.93 16 43 H 0.11 1.70 7.87 -2.39 -0.02 1.68 16 44 H 0.10 1.81 7.82 -2.39 -0.02 1.79 16 45 H 0.02 1.18 7.47 -2.39 -0.02 1.16 16 46 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 48 H 0.05 2.90 5.91 -2.39 -0.01 2.89 16 49 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 50 H 0.01 0.58 7.52 -2.39 -0.02 0.56 16 51 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.10 1.63 7.28 -2.39 -0.02 1.61 16 53 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -79.84 403.72 2.89 -76.95 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.86 Total: 12.07 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.74 Total: 13.04 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.85 Total: -113.28 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.88 Total: -37.76 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -79.84 2.89 -76.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049093186.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.588 kcal (2) G-P(sol) polarization free energy of solvation -79.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds