Wall clock time and date at job start Tue Mar 31 2020 19:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53002 * 109.47233 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46817 * 60.00194 * 5 4 2 7 7 C 1.53005 * 109.47452 * 300.00239 * 6 5 4 8 8 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 9 9 H 1.08996 * 109.47853 * 300.00202 * 8 2 1 10 10 O 1.42905 * 109.47264 * 60.00148 * 8 2 1 11 11 C 1.42891 * 114.00085 * 209.99992 * 10 8 2 12 12 C 1.50703 * 109.47140 * 179.97438 * 11 10 8 13 13 O 1.21282 * 119.99880 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00066 * 179.97438 * 12 11 10 15 15 C 1.46661 * 125.33469 * 180.02562 * 14 12 11 16 16 C 1.53671 * 107.96976 * 180.71285 * 15 14 12 17 17 H 1.09002 * 112.77349 * 140.60939 * 16 15 14 18 18 C 1.53987 * 109.29675 * 266.92951 * 16 15 14 19 19 N 1.46755 * 106.67389 * 138.83825 * 18 16 15 20 20 C 1.36942 * 125.33546 * 161.58835 * 19 18 16 21 21 H 1.08001 * 119.99149 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00502 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99724 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00246 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47034 * 59.99927 * 24 22 20 26 26 H 1.48499 * 109.46878 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46812 * 299.99586 * 24 22 20 28 28 C 1.46660 * 109.33464 * 341.55055 * 19 18 16 29 29 C 1.53675 * 107.96856 * 0.70808 * 28 19 18 30 30 H 1.09001 * 112.77141 * 139.88732 * 29 28 19 31 31 C 1.46763 * 125.33349 * 359.69598 * 14 12 11 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 34 34 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 35 35 H 1.08992 * 109.47399 * 300.00166 * 4 2 1 36 36 H 1.09004 * 109.46724 * 60.00652 * 4 2 1 37 37 H 1.09002 * 109.47075 * 300.00932 * 5 4 2 38 38 H 1.08993 * 109.47662 * 180.02562 * 5 4 2 39 39 H 1.09001 * 109.47289 * 180.02562 * 6 5 4 40 40 H 1.09002 * 109.47153 * 60.00231 * 6 5 4 41 41 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 42 42 H 1.09000 * 109.47360 * 180.02562 * 7 6 5 43 43 H 1.09008 * 109.47259 * 299.99696 * 11 10 8 44 44 H 1.08991 * 109.47653 * 59.99990 * 11 10 8 45 45 H 1.09001 * 109.76356 * 300.34093 * 15 14 12 46 46 H 1.08997 * 109.76476 * 61.06982 * 15 14 12 47 47 H 1.08997 * 110.01834 * 258.13821 * 18 16 15 48 48 H 1.09000 * 110.01758 * 19.52980 * 18 16 15 49 49 H 0.96994 * 119.99953 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.77075 * 120.34249 * 28 19 18 51 51 H 1.09001 * 109.76764 * 241.07251 * 28 19 18 52 52 H 1.08990 * 110.01751 * 280.84883 * 31 14 12 53 53 H 1.08996 * 110.01477 * 42.24627 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 6 2.0399 -0.7212 1.2493 9 1 1.6766 -0.2075 2.1393 10 8 1.5636 -2.0685 1.2493 11 6 1.3698 -2.6165 2.5547 12 6 0.8684 -4.0327 2.4357 13 8 0.6947 -4.5244 1.3408 14 7 0.6141 -4.7530 3.5461 15 6 0.1253 -6.1356 3.5667 16 6 -0.0426 -6.5573 5.0349 17 1 -0.9346 -7.1612 5.2010 18 6 1.2456 -7.2506 5.5157 19 7 1.5031 -6.7641 6.8761 20 6 2.3201 -7.3704 7.7927 21 1 2.8363 -8.2834 7.5352 22 6 2.4847 -6.8116 9.0526 23 7 1.8559 -5.6986 9.3661 24 14 3.5986 -7.6391 10.3031 25 1 4.9792 -7.7162 9.7617 26 1 3.6039 -6.8490 11.5605 27 1 3.0985 -9.0094 10.5811 28 6 0.7490 -5.5262 7.0999 29 6 -0.0442 -5.2164 5.8206 30 1 -1.0480 -4.8446 6.0263 31 6 0.7894 -4.2791 4.9240 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6768 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.9330 0.3070 -1.2496 38 1 3.9335 -1.2342 -2.1396 39 1 5.1705 -1.4409 -0.0002 40 1 3.7176 -2.4694 0.0000 41 1 3.9334 0.3074 1.2488 42 1 3.9345 -1.2337 2.1390 43 1 2.3161 -2.6099 3.0957 44 1 0.6380 -2.0167 3.0956 45 1 -0.8348 -6.1948 3.0540 46 1 0.8464 -6.7889 3.0754 47 1 1.1059 -8.3315 5.5263 48 1 2.0771 -6.9879 4.8617 49 1 1.9706 -5.3083 10.2466 50 1 0.0628 -5.6587 7.9363 51 1 1.4375 -4.7087 7.3139 52 1 1.8415 -4.3280 5.2043 53 1 0.4255 -3.2558 5.0157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049093187.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:35 Heat of formation + Delta-G solvation = -85.873859 kcal Electronic energy + Delta-G solvation = -30475.244884 eV Core-core repulsion = 26539.014907 eV Total energy + Delta-G solvation = -3936.229977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.59676 -40.55930 -39.49943 -36.97135 -36.57082 -34.13152 -33.48408 -31.86230 -31.60731 -31.04855 -29.00045 -27.19682 -27.08592 -26.72785 -24.31152 -23.41095 -22.25713 -21.96273 -20.88383 -20.59552 -20.46984 -18.89376 -18.13777 -17.50373 -17.43897 -16.76770 -16.66383 -16.27036 -16.09619 -15.76655 -15.50362 -15.17887 -14.86974 -14.70035 -14.43703 -14.36499 -13.95605 -13.87420 -13.62639 -13.50885 -13.47163 -13.32956 -13.11235 -13.03205 -12.70536 -12.61590 -12.53611 -12.44236 -12.40523 -12.03785 -11.86155 -11.75246 -11.73191 -11.57184 -11.46696 -11.41549 -11.36441 -10.87693 -10.84228 -10.66024 -10.37811 -9.70985 -8.86940 -7.84403 -5.18964 1.47804 1.49618 1.50262 1.55953 1.68728 2.50441 2.86996 3.32353 3.35089 3.49148 3.67132 3.79841 3.81296 3.85760 3.92048 3.95267 4.12568 4.18083 4.23881 4.26041 4.27745 4.29012 4.43155 4.47048 4.55515 4.59397 4.61026 4.64154 4.72890 4.78652 4.82660 4.89684 4.92176 4.97556 5.01157 5.06951 5.09774 5.14585 5.18483 5.22445 5.30534 5.33736 5.35994 5.42251 5.46967 5.48666 5.62925 5.65696 5.80556 6.19532 6.23063 6.44810 7.07223 7.14005 7.80530 8.41900 9.25154 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002469 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.615479 B =11336.205703 C =11954.994141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.102 0.898 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.141 4.141 8 C 0.085 3.915 9 H 0.078 0.922 10 O -0.371 6.371 11 C 0.052 3.948 12 C 0.525 3.475 13 O -0.571 6.571 14 N -0.610 5.610 15 C 0.125 3.875 16 C -0.095 4.095 17 H 0.118 0.882 18 C 0.139 3.861 19 N -0.623 5.623 20 C -0.245 4.245 21 H 0.077 0.923 22 C -0.059 4.059 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.197 3.803 29 C -0.109 4.109 30 H 0.118 0.882 31 C 0.115 3.885 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.038 0.962 48 H 0.011 0.989 49 H 0.248 0.752 50 H 0.016 0.984 51 H 0.021 0.979 52 H 0.056 0.944 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 14.418 -16.681 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.179 4.179 8 C 0.028 3.972 9 H 0.096 0.904 10 O -0.290 6.290 11 C -0.027 4.027 12 C 0.315 3.685 13 O -0.450 6.450 14 N -0.344 5.344 15 C 0.002 3.998 16 C -0.114 4.114 17 H 0.136 0.864 18 C 0.014 3.986 19 N -0.350 5.350 20 C -0.374 4.374 21 H 0.095 0.905 22 C -0.253 4.253 23 N -0.594 5.594 24 Si 0.803 3.197 25 H -0.207 1.207 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.072 3.928 29 C -0.129 4.129 30 H 0.136 0.864 31 C -0.007 4.007 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.039 0.961 52 H 0.074 0.926 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.247 14.136 -17.308 22.459 hybrid contribution 0.842 -0.802 1.289 1.736 sum -1.405 13.334 -16.019 20.889 Atomic orbital electron populations 1.21758 0.94871 1.01343 1.02191 1.21264 0.96067 0.99304 0.93453 0.88021 1.21495 0.95704 1.00142 0.97523 1.21503 0.95359 1.01034 0.97281 1.21412 0.99931 0.99045 0.95070 1.22063 0.95408 1.02169 0.98212 1.22435 0.93593 0.81844 0.99374 0.90356 1.88027 1.86750 1.29170 1.25022 1.22221 1.02243 0.90837 0.87439 1.20463 0.77335 0.88231 0.82499 1.90681 1.53936 1.72995 1.27354 1.48312 1.65272 1.14564 1.06263 1.21683 0.99694 0.82140 0.96303 1.22802 0.99072 0.96937 0.92621 0.86418 1.21458 0.94307 0.97016 0.85836 1.44519 1.53301 1.26581 1.10574 1.19345 1.19477 1.05686 0.92918 0.90522 1.25544 1.01958 0.98427 0.99327 1.70128 1.46988 1.21398 1.20910 0.85218 0.78675 0.77595 0.78217 1.20686 1.21841 1.20514 1.20729 0.92274 0.87735 0.92073 1.23101 1.00035 0.94658 0.95068 0.86404 1.22199 0.99869 0.99412 0.79202 0.91998 0.91819 0.94184 0.93928 0.91243 0.90533 0.92316 0.91733 0.94137 0.88968 0.92287 0.89334 0.87760 0.90327 0.92217 0.94376 0.97107 0.94247 0.96607 0.96110 0.92587 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.05 71.98 0.65 -1.66 16 2 C -0.08 -1.28 2.55 -10.79 -0.03 -1.31 16 3 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.98 5.06 30.60 0.15 -1.82 16 5 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 6 C -0.12 -2.21 5.78 30.60 0.18 -2.04 16 7 C -0.14 -2.31 5.63 30.61 0.17 -2.14 16 8 C 0.08 1.48 2.35 30.61 0.07 1.56 16 9 H 0.08 1.09 7.79 -2.39 -0.02 1.08 16 10 O -0.37 -9.23 7.50 -129.94 -0.97 -10.20 16 11 C 0.05 1.20 5.26 71.24 0.37 1.58 16 12 C 0.53 16.18 7.91 87.66 0.69 16.87 16 13 O -0.57 -22.21 16.81 16.00 0.27 -21.94 16 14 N -0.61 -17.84 3.31 -817.11 -2.71 -20.54 16 15 C 0.12 3.63 6.19 86.57 0.54 4.16 16 16 C -0.09 -2.93 4.10 -9.40 -0.04 -2.97 16 17 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 18 C 0.14 5.51 6.42 86.66 0.56 6.07 16 19 N -0.62 -30.63 3.38 -697.72 -2.36 -32.99 16 20 C -0.25 -13.42 10.25 84.03 0.86 -12.56 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.06 -3.26 5.48 84.86 0.47 -2.79 16 23 N -0.95 -54.15 10.25 21.65 0.22 -53.93 16 24 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 C 0.20 8.84 4.72 86.58 0.41 9.25 16 29 C -0.11 -3.46 4.12 -9.33 -0.04 -3.50 16 30 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 31 C 0.12 3.25 5.79 86.73 0.50 3.75 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.86 7.68 -2.39 -0.02 0.84 16 35 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.03 7.88 -2.39 -0.02 1.01 16 43 H 0.09 1.85 7.88 -2.38 -0.02 1.83 16 44 H 0.10 1.81 7.82 -2.39 -0.02 1.79 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.86 7.63 -2.39 -0.02 1.84 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 48 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 49 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 50 H 0.02 0.80 7.37 -2.39 -0.02 0.79 16 51 H 0.02 1.04 6.93 -2.39 -0.02 1.02 16 52 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 53 H 0.10 2.20 7.61 -2.39 -0.02 2.18 16 Total: -1.00 -69.86 401.64 3.04 -66.82 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.86 Total: 15.30 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 5.70 Total: 10.79 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -4.84 Total: -107.46 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.71 Total: -32.15 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.86 3.04 -66.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049093187.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.055 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds