Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.27669 * 2 1 4 4 C 1.54952 * 110.30957 * 237.80480 * 2 1 3 5 5 C 1.55452 * 100.98936 * 204.68969 * 4 2 1 6 6 C 1.54381 * 102.18507 * 34.03868 * 5 4 2 7 7 H 1.09004 * 109.82743 * 98.29733 * 6 5 4 8 8 C 1.52994 * 109.83056 * 219.17773 * 6 5 4 9 9 C 1.53003 * 109.47064 * 184.81370 * 8 6 5 10 10 C 1.50704 * 109.47095 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99908 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00028 * 180.02562 * 10 9 8 13 13 C 1.47669 * 134.45648 * 179.97438 * 12 10 9 14 14 C 1.53507 * 85.97881 * 204.33673 * 13 12 10 15 15 C 1.47668 * 134.45972 * 0.02992 * 12 10 9 16 16 C 1.52667 * 113.57559 * 91.01836 * 14 13 12 17 17 C 1.53329 * 109.11367 * 73.81170 * 16 14 13 18 18 N 1.46884 * 108.76293 * 52.40749 * 17 16 14 19 19 C 1.36938 * 120.46742 * 124.46976 * 18 17 16 20 20 H 1.08006 * 119.99904 * 331.97562 * 19 18 17 21 21 C 1.38810 * 119.99938 * 152.25073 * 19 18 17 22 22 N 1.31625 * 119.99804 * 159.44561 * 21 19 18 23 23 Si 1.86799 * 120.00103 * 339.44089 * 21 19 18 24 24 H 1.48504 * 109.46993 * 93.75873 * 23 21 19 25 25 H 1.48501 * 109.47021 * 213.75566 * 23 21 19 26 26 H 1.48497 * 109.46928 * 333.75755 * 23 21 19 27 27 C 1.46883 * 119.06767 * 304.74756 * 18 17 16 28 28 C 1.52674 * 113.56381 * 222.23836 * 14 13 12 29 29 O 1.43236 * 107.66429 * 338.74183 * 6 5 4 30 30 H 1.09004 * 109.47018 * 299.36738 * 1 2 3 31 31 H 1.09007 * 109.47247 * 59.36086 * 1 2 3 32 32 H 1.09000 * 109.47635 * 179.36192 * 1 2 3 33 33 H 1.08999 * 111.12492 * 322.56407 * 4 2 1 34 34 H 1.08999 * 111.12450 * 86.72311 * 4 2 1 35 35 H 1.08998 * 110.83599 * 275.89127 * 5 4 2 36 36 H 1.09002 * 110.91850 * 152.22357 * 5 4 2 37 37 H 1.09004 * 109.47088 * 64.81631 * 8 6 5 38 38 H 1.08996 * 109.47407 * 304.81580 * 8 6 5 39 39 H 1.09002 * 109.46932 * 60.00729 * 9 8 6 40 40 H 1.08996 * 109.47181 * 300.00349 * 9 8 6 41 41 H 1.09004 * 113.78801 * 90.07223 * 13 12 10 42 42 H 1.08991 * 113.89939 * 318.61569 * 13 12 10 43 43 H 1.09005 * 113.78896 * 41.38760 * 15 12 10 44 44 H 1.09000 * 113.78661 * 269.93246 * 15 12 10 45 45 H 1.09009 * 109.52801 * 313.92426 * 16 14 13 46 46 H 1.08999 * 109.53246 * 193.71042 * 16 14 13 47 47 H 1.08996 * 109.59070 * 292.62775 * 17 16 14 48 48 H 1.09004 * 109.59054 * 172.19180 * 17 16 14 49 49 H 0.96997 * 119.99519 * 180.02562 * 22 21 19 50 50 H 1.09005 * 109.58870 * 175.03641 * 27 18 17 51 51 H 1.08996 * 109.58679 * 295.47176 * 27 18 17 52 52 H 1.08994 * 109.53284 * 46.07139 * 28 14 13 53 53 H 1.09005 * 109.52942 * 166.29883 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2297 5 6 3.4709 -1.2053 -0.7180 6 6 3.2112 -1.4412 0.7854 7 1 3.0629 -2.5048 0.9725 8 6 4.3991 -0.9311 1.6036 9 6 4.1878 -1.2763 3.0791 10 6 5.3576 -0.7732 3.8852 11 8 6.2701 -0.1951 3.3338 12 7 5.3896 -0.9658 5.2187 13 6 6.3447 -0.6207 6.2908 14 6 5.7322 -1.7955 7.0662 15 6 4.4843 -1.6071 6.1931 16 6 6.4488 -3.1227 6.8302 17 6 7.7892 -3.1089 7.5745 18 7 7.5473 -2.7447 8.9768 19 6 7.9722 -3.5623 9.9898 20 1 8.0641 -4.6255 9.8231 21 6 8.2792 -3.0255 11.2325 22 7 8.2917 -3.7980 12.2982 23 14 8.6749 -1.2069 11.3924 24 1 7.4393 -0.4603 11.7404 25 1 9.6879 -1.0129 12.4607 26 1 9.2119 -0.7020 10.1033 27 6 6.8376 -1.4942 9.2771 28 6 5.4962 -1.4944 8.5442 29 8 2.0286 -0.7157 1.1412 30 1 -0.3633 0.5040 0.8956 31 1 -0.3634 0.5238 -0.8842 32 1 -0.3634 -1.0276 -0.0114 33 1 1.4470 -1.6429 -1.4493 34 1 2.1496 -0.1223 -2.0994 35 1 4.1992 -0.4079 -0.8654 36 1 3.7970 -2.1248 -1.2043 37 1 4.4800 0.1501 1.4914 38 1 5.3149 -1.4029 1.2476 39 1 4.1069 -2.3575 3.1914 40 1 3.2720 -0.8045 3.4351 41 1 6.1603 0.3516 6.7477 42 1 7.3889 -0.7712 6.0172 43 1 4.0496 -2.5423 5.8400 44 1 3.7467 -0.9282 6.6210 45 1 6.6260 -3.2564 5.7629 46 1 5.8329 -3.9408 7.2036 47 1 8.4541 -2.3767 7.1164 48 1 8.2438 -4.0985 7.5272 49 1 8.5059 -3.4227 13.1666 50 1 6.6655 -1.4205 10.3509 51 1 7.4341 -0.6460 8.9413 52 1 5.0236 -0.5175 8.6461 53 1 4.8496 -2.2599 8.9733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050761363.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = -57.195780 kcal Electronic energy + Delta-G solvation = -29790.102842 eV Core-core repulsion = 25855.116440 eV Total energy + Delta-G solvation = -3934.986402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.90045 -40.65979 -39.63687 -37.70209 -34.86199 -34.32324 -33.17422 -32.52617 -32.02111 -31.52243 -28.95654 -27.73098 -26.69355 -25.66589 -24.45157 -23.77660 -22.66848 -22.44779 -21.34236 -20.21507 -19.50071 -18.50141 -17.99570 -17.86303 -17.30262 -16.98964 -16.85726 -16.47667 -15.95376 -15.66776 -15.28636 -15.25561 -15.08677 -14.77254 -14.56617 -14.39558 -14.29722 -13.90601 -13.84023 -13.68173 -13.36418 -13.29188 -13.15754 -13.11143 -12.91869 -12.66252 -12.59948 -12.50354 -12.22993 -12.12059 -12.04915 -11.81502 -11.69371 -11.62229 -11.61287 -11.44880 -11.37288 -11.26471 -10.78064 -10.55603 -10.42474 -9.69054 -8.88675 -8.14662 -5.46057 1.29900 1.43081 1.51501 1.61965 1.85338 2.42709 2.84585 3.08390 3.30612 3.34356 3.45464 3.60682 3.79503 3.82298 3.88912 3.95918 4.08928 4.11125 4.17669 4.26144 4.36200 4.37659 4.44930 4.49785 4.53735 4.55484 4.61085 4.62708 4.69238 4.72458 4.74110 4.80098 4.82013 4.83858 4.89946 4.92047 4.96422 4.99445 5.02651 5.07013 5.13742 5.16151 5.23910 5.26303 5.31782 5.32333 5.35992 5.50263 5.90283 6.15167 6.18220 6.74920 6.95305 7.13365 7.65621 8.05650 9.05280 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002038 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.859690 B =13733.749924 C =13828.140686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 H 0.063 0.937 4 C -0.146 4.146 5 C -0.152 4.152 6 C 0.081 3.919 7 H 0.092 0.908 8 C -0.107 4.107 9 C -0.119 4.119 10 C 0.526 3.474 11 O -0.596 6.596 12 N -0.641 5.641 13 C 0.108 3.892 14 C -0.078 4.078 15 C 0.121 3.879 16 C -0.095 4.095 17 C 0.145 3.855 18 N -0.618 5.618 19 C -0.245 4.245 20 H 0.051 0.949 21 C -0.035 4.035 22 N -0.957 5.957 23 Si 0.945 3.055 24 H -0.270 1.270 25 H -0.315 1.315 26 H -0.265 1.265 27 C 0.120 3.880 28 C -0.109 4.109 29 O -0.394 6.394 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.054 0.946 49 H 0.261 0.739 50 H 0.049 0.951 51 H 0.029 0.971 52 H 0.090 0.910 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.923 7.032 -27.140 33.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 H 0.081 0.919 4 C -0.183 4.183 5 C -0.190 4.190 6 C 0.024 3.976 7 H 0.109 0.891 8 C -0.145 4.145 9 C -0.159 4.159 10 C 0.318 3.682 11 O -0.478 6.478 12 N -0.375 5.375 13 C -0.015 4.015 14 C -0.079 4.079 15 C -0.001 4.001 16 C -0.134 4.134 17 C 0.020 3.980 18 N -0.342 5.342 19 C -0.374 4.374 20 H 0.069 0.931 21 C -0.230 4.230 22 N -0.603 5.603 23 Si 0.775 3.225 24 H -0.197 1.197 25 H -0.244 1.244 26 H -0.190 1.190 27 C -0.005 4.005 28 C -0.149 4.149 29 O -0.314 6.314 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.047 0.953 52 H 0.109 0.891 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.517 7.347 -27.315 33.271 hybrid contribution 1.067 0.728 0.745 1.492 sum -16.450 8.076 -26.569 32.276 Atomic orbital electron populations 1.21875 0.92848 1.02915 1.02849 1.23128 0.95578 0.95460 0.85161 0.91904 1.23338 0.95666 1.01157 0.98167 1.23213 0.98163 1.03485 0.94118 1.22804 0.84310 0.96341 0.94174 0.89064 1.21679 0.98103 1.01415 0.93330 1.21542 0.95730 1.03791 0.94809 1.21101 0.88233 0.78033 0.80840 1.90663 1.40973 1.45328 1.70809 1.50182 1.24925 1.57808 1.04628 1.23275 0.94632 0.98789 0.84790 1.21889 0.96454 0.95121 0.94417 1.23496 0.93178 0.98701 0.84713 1.21570 0.96759 0.95681 0.99415 1.21040 0.95384 0.98420 0.83175 1.44429 1.64818 1.23002 1.01965 1.18861 1.38076 0.89958 0.90551 0.93112 1.25890 1.00206 1.01418 0.95463 1.69965 1.53839 1.37670 0.98867 0.85928 0.77504 0.82393 0.76724 1.19662 1.24393 1.19003 1.21299 0.93150 0.87699 0.98358 1.21750 0.97157 1.02619 0.93352 1.88418 1.42429 1.65105 1.35484 0.92621 0.89676 0.91931 0.89540 0.88683 0.90708 0.88499 0.92845 0.90784 0.87082 0.87750 0.88971 0.92065 0.87788 0.87164 0.91159 0.91196 0.95767 0.92776 0.93043 0.93235 0.95329 0.89146 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.62 71.98 0.69 -0.80 16 2 C 0.06 0.83 4.08 31.26 0.13 0.95 16 3 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.15 -1.33 6.57 32.11 0.21 -1.12 16 5 C -0.15 -1.66 6.56 31.91 0.21 -1.45 16 6 C 0.08 1.17 3.51 31.06 0.11 1.28 16 7 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 8 C -0.11 -1.99 4.07 30.59 0.12 -1.86 16 9 C -0.12 -2.21 5.36 29.85 0.16 -2.05 16 10 C 0.53 14.03 8.06 87.66 0.71 14.73 16 11 O -0.60 -21.13 16.71 -3.03 -0.05 -21.18 16 12 N -0.64 -15.56 3.44 -842.53 -2.90 -18.46 16 13 C 0.11 2.89 7.62 86.32 0.66 3.55 16 14 C -0.08 -1.98 0.77 -52.04 -0.04 -2.02 16 15 C 0.12 2.21 7.74 86.30 0.67 2.88 16 16 C -0.10 -2.76 5.21 30.59 0.16 -2.60 16 17 C 0.14 5.47 6.38 86.42 0.55 6.02 16 18 N -0.62 -28.12 2.74 -699.68 -1.91 -30.04 16 19 C -0.24 -13.69 10.01 84.03 0.84 -12.85 16 20 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 21 C -0.04 -2.04 5.23 84.86 0.44 -1.60 16 22 N -0.96 -59.87 13.97 21.65 0.30 -59.57 16 23 Si 0.95 46.40 24.38 68.60 1.67 48.07 16 24 H -0.27 -12.31 6.65 99.48 0.66 -11.65 16 25 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 26 H -0.27 -12.63 6.64 99.48 0.66 -11.97 16 27 C 0.12 4.75 4.06 86.26 0.35 5.10 16 28 C -0.11 -3.15 5.24 30.44 0.16 -2.99 16 29 O -0.39 -6.88 10.32 -148.98 -1.54 -8.42 16 30 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.67 8.06 -2.39 -0.02 0.65 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.89 7.85 -2.39 -0.02 0.87 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.82 7.89 -2.39 -0.02 1.80 16 41 H 0.09 2.27 8.07 -2.38 -0.02 2.26 16 42 H 0.06 1.90 7.41 -2.39 -0.02 1.88 16 43 H 0.10 1.51 8.09 -2.38 -0.02 1.49 16 44 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 45 H 0.07 1.86 8.01 -2.38 -0.02 1.84 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.02 0.91 7.49 -2.39 -0.02 0.90 16 48 H 0.05 2.12 7.92 -2.38 -0.02 2.10 16 49 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 50 H 0.05 2.21 4.41 -2.38 -0.01 2.20 16 51 H 0.03 1.12 7.11 -2.39 -0.02 1.10 16 52 H 0.09 2.06 8.12 -2.39 -0.02 2.04 16 53 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -73.78 404.55 2.47 -71.31 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.77 Total: 13.08 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.13 Total: 5.19 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.51 Total: -108.06 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.59 Total: -29.59 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -73.78 2.47 -71.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050761363.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.116 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds