Wall clock time and date at job start Tue Mar 31 2020 20:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.33236 * 2 1 4 4 C 1.54478 * 110.37766 * 122.25138 * 2 1 3 5 5 C 1.54506 * 104.06747 * 142.91988 * 4 2 1 6 6 C 1.54486 * 104.06152 * 359.97438 * 5 4 2 7 7 H 1.08996 * 110.36852 * 94.96181 * 6 5 4 8 8 C 1.52994 * 110.37382 * 217.19157 * 6 5 4 9 9 C 1.52998 * 109.47132 * 183.45353 * 8 6 5 10 10 C 1.50704 * 109.46969 * 179.97438 * 9 8 6 11 11 O 1.21276 * 120.00001 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99606 * 179.97438 * 10 9 8 13 13 C 1.47662 * 134.45345 * 180.02562 * 12 10 9 14 14 C 1.53515 * 85.97789 * 204.31464 * 13 12 10 15 15 C 1.47671 * 134.45914 * 0.02562 * 12 10 9 16 16 C 1.52671 * 113.57335 * 91.01692 * 14 13 12 17 17 C 1.53333 * 109.10993 * 73.80828 * 16 14 13 18 18 N 1.46880 * 108.76357 * 52.40768 * 17 16 14 19 19 C 1.36936 * 120.46772 * 124.44666 * 18 17 16 20 20 H 1.07999 * 119.99716 * 208.44398 * 19 18 17 21 21 C 1.38809 * 120.00303 * 28.43321 * 19 18 17 22 22 N 1.31626 * 119.99824 * 17.63997 * 21 19 18 23 23 Si 1.86799 * 120.00208 * 197.63105 * 21 19 18 24 24 H 1.48500 * 109.46643 * 60.00588 * 23 21 19 25 25 H 1.48498 * 109.46950 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47246 * 300.00541 * 23 21 19 27 27 C 1.46894 * 119.06363 * 304.45857 * 18 17 16 28 28 C 1.52675 * 113.55867 * 222.23042 * 14 13 12 29 29 O 1.44427 * 104.89954 * 336.07997 * 6 5 4 30 30 H 1.09000 * 109.47305 * 297.74672 * 1 2 3 31 31 H 1.08997 * 109.47866 * 57.75133 * 1 2 3 32 32 H 1.08999 * 109.47285 * 177.75436 * 1 2 3 33 33 H 1.09000 * 110.50764 * 24.27147 * 4 2 1 34 34 H 1.09002 * 110.62796 * 261.62379 * 4 2 1 35 35 H 1.08998 * 110.50944 * 241.36061 * 5 4 2 36 36 H 1.08991 * 110.62910 * 118.70078 * 5 4 2 37 37 H 1.08994 * 109.47279 * 63.45008 * 8 6 5 38 38 H 1.09003 * 109.46940 * 303.44996 * 8 6 5 39 39 H 1.08994 * 109.47320 * 59.99679 * 9 8 6 40 40 H 1.09003 * 109.46916 * 299.99658 * 9 8 6 41 41 H 1.08996 * 113.79751 * 90.04990 * 13 12 10 42 42 H 1.09003 * 113.89581 * 318.58785 * 13 12 10 43 43 H 1.08992 * 113.78759 * 41.40836 * 15 12 10 44 44 H 1.09003 * 113.78525 * 269.94758 * 15 12 10 45 45 H 1.08998 * 109.52808 * 193.69740 * 16 14 13 46 46 H 1.08996 * 109.52858 * 313.91725 * 16 14 13 47 47 H 1.09004 * 109.58736 * 172.19282 * 17 16 14 48 48 H 1.09002 * 109.58609 * 292.62353 * 17 16 14 49 49 H 0.96998 * 119.99542 * 179.97438 * 22 21 19 50 50 H 1.08994 * 109.59374 * 295.77081 * 27 18 17 51 51 H 1.09000 * 109.70868 * 175.39624 * 27 18 17 52 52 H 1.08993 * 109.53364 * 46.09122 * 28 14 13 53 53 H 1.09007 * 109.52625 * 166.30981 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3194 -1.5027 0.6881 6 6 3.3894 -1.0851 -0.7976 7 1 4.0546 -0.2305 -0.9206 8 6 3.8647 -2.2571 -1.6585 9 6 4.0089 -1.7977 -3.1107 10 6 4.4777 -2.9520 -3.9586 11 8 4.6773 -4.0353 -3.4512 12 7 4.6752 -2.7804 -5.2807 13 6 5.1157 -3.6585 -6.3831 14 6 5.5608 -2.3694 -7.0879 15 6 4.5377 -1.6389 -6.2074 16 6 7.0080 -1.9815 -6.7944 17 6 7.9452 -2.9246 -7.5581 18 7 7.5529 -2.9364 -8.9735 19 6 8.4642 -2.6316 -9.9492 20 1 8.1328 -2.1970 -10.8807 21 6 9.8137 -2.8810 -9.7409 22 7 10.1909 -3.7073 -8.7882 23 14 11.0945 -2.0442 -10.8126 24 1 10.9753 -0.5711 -10.6674 25 1 12.4513 -2.4755 -10.3906 26 1 10.8749 -2.4210 -12.2321 27 6 6.1692 -3.2796 -9.3276 28 6 5.2202 -2.3386 -8.5758 29 8 2.0354 -0.7223 -1.1455 30 1 -0.3634 0.4784 0.9095 31 1 -0.3635 0.5483 -0.8691 32 1 -0.3634 -1.0269 -0.0403 33 1 1.3283 -1.4916 1.5775 34 1 2.3408 -0.0837 2.0239 35 1 3.1987 -2.5824 0.7756 36 1 4.2126 -1.1748 1.2198 37 1 3.1368 -3.0666 -1.6041 38 1 4.8286 -2.6099 -1.2916 39 1 4.7368 -0.9882 -3.1651 40 1 3.0450 -1.4448 -3.4776 41 1 4.2990 -4.1755 -6.8868 42 1 5.9394 -4.3212 -6.1175 43 1 4.9019 -0.6957 -5.8003 44 1 3.5490 -1.5557 -6.6588 45 1 7.1825 -0.9549 -7.1163 46 1 7.1981 -2.0664 -5.7245 47 1 8.9726 -2.5719 -7.4665 48 1 7.8643 -3.9313 -7.1480 49 1 11.1339 -3.8818 -8.6430 50 1 5.9637 -4.3110 -9.0414 51 1 6.0249 -3.1626 -10.4017 52 1 4.1911 -2.6668 -8.7210 53 1 5.3372 -1.3235 -8.9555 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050761364.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:44 Heat of formation + Delta-G solvation = -60.629759 kcal Electronic energy + Delta-G solvation = -29709.630750 eV Core-core repulsion = 25774.495440 eV Total energy + Delta-G solvation = -3935.135311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.83361 -40.58632 -39.57914 -37.48104 -34.90558 -34.26244 -33.15068 -32.18609 -31.68579 -31.38405 -28.85666 -27.71521 -26.69140 -25.80479 -23.98527 -23.74942 -22.52312 -22.15689 -21.71206 -20.13774 -19.52577 -18.36347 -17.82391 -17.53054 -17.16746 -16.84025 -16.70318 -16.60166 -15.87440 -15.64046 -15.53443 -15.24795 -14.90320 -14.68535 -14.51074 -14.24467 -13.99773 -13.85475 -13.81053 -13.40248 -13.30050 -13.08570 -13.03237 -12.95109 -12.87285 -12.60384 -12.53479 -12.52659 -12.24458 -12.09676 -12.02627 -11.82712 -11.78835 -11.65815 -11.49411 -11.33720 -11.29774 -11.22919 -10.65768 -10.62581 -10.49953 -9.67142 -8.63811 -7.84860 -5.30604 1.48054 1.50174 1.57006 1.62632 1.86391 2.53333 2.88702 3.26294 3.35284 3.46997 3.69829 3.70488 3.77088 3.89803 3.95374 4.03156 4.06801 4.12870 4.20983 4.29848 4.36653 4.46264 4.49723 4.53543 4.54979 4.60364 4.65011 4.67927 4.69757 4.75295 4.79717 4.85926 4.90358 4.93107 4.95956 4.97225 5.06565 5.11102 5.14753 5.15883 5.20603 5.25290 5.27431 5.31516 5.34086 5.42380 5.55557 5.67553 5.77018 6.01187 6.41925 6.77172 7.13476 7.17295 7.90223 8.41211 9.20762 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002030 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.365930 B =13790.319798 C =14059.316594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.154 4.154 6 C 0.077 3.923 7 H 0.083 0.917 8 C -0.093 4.093 9 C -0.119 4.119 10 C 0.523 3.477 11 O -0.598 6.598 12 N -0.643 5.643 13 C 0.109 3.891 14 C -0.075 4.075 15 C 0.121 3.879 16 C -0.099 4.099 17 C 0.180 3.820 18 N -0.608 5.608 19 C -0.258 4.258 20 H 0.070 0.930 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.966 3.034 24 H -0.276 1.276 25 H -0.299 1.299 26 H -0.275 1.275 27 C 0.138 3.862 28 C -0.104 4.104 29 O -0.390 6.390 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.051 0.949 48 H -0.014 1.014 49 H 0.248 0.752 50 H 0.010 0.990 51 H 0.057 0.943 52 H 0.092 0.908 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.791 11.757 17.080 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.004 3.996 3 H 0.095 0.905 4 C -0.185 4.185 5 C -0.192 4.192 6 C 0.020 3.980 7 H 0.101 0.899 8 C -0.131 4.131 9 C -0.158 4.158 10 C 0.315 3.685 11 O -0.480 6.480 12 N -0.377 5.377 13 C -0.013 4.013 14 C -0.076 4.076 15 C 0.000 4.000 16 C -0.138 4.138 17 C 0.054 3.946 18 N -0.331 5.331 19 C -0.388 4.388 20 H 0.088 0.912 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.201 1.201 27 C 0.013 3.987 28 C -0.143 4.143 29 O -0.311 6.311 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.135 0.865 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.004 0.996 49 H 0.057 0.943 50 H 0.028 0.972 51 H 0.075 0.925 52 H 0.111 0.889 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.692 11.069 17.385 28.505 hybrid contribution 1.445 -0.495 -0.392 1.576 sum -18.247 10.575 16.993 27.084 Atomic orbital electron populations 1.21813 0.92651 1.02562 1.03215 1.23187 0.95897 0.95751 0.84810 0.90470 1.22999 0.97216 0.99961 0.98358 1.23001 0.99619 1.01468 0.95065 1.23031 0.84601 0.96568 0.93822 0.89878 1.21341 1.01764 0.97017 0.92929 1.21553 1.04125 0.95763 0.94398 1.21138 0.75971 0.90236 0.81149 1.90661 1.54578 1.29943 1.72853 1.50212 1.66092 1.15901 1.05447 1.23242 0.98164 0.95109 0.84800 1.21884 0.95043 0.94992 0.95705 1.23543 0.99884 0.90637 0.85984 1.21666 0.93763 1.00073 0.98341 1.20500 0.97000 0.93966 0.83107 1.44276 1.06968 1.80032 1.01824 1.19511 0.88028 1.33128 0.98163 0.91224 1.25833 1.00106 0.98740 1.00355 1.70208 1.15068 1.36610 1.36570 0.85355 0.77868 0.78656 0.78666 1.20163 1.22545 1.20067 1.21093 0.84389 0.95275 0.97952 1.21810 0.99283 1.00961 0.92282 1.89158 1.27523 1.75042 1.39348 0.89326 0.92150 0.92714 0.90644 0.88830 0.91327 0.89058 0.92450 0.90567 0.87137 0.87353 0.88500 0.93599 0.88127 0.86518 0.91500 0.93161 0.93052 0.99634 0.94327 0.97247 0.92466 0.88930 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.52 71.98 0.69 -0.91 16 2 C 0.06 0.80 3.92 31.09 0.12 0.92 16 3 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.15 -1.63 6.63 31.61 0.21 -1.42 16 5 C -0.15 -2.08 6.63 31.61 0.21 -1.87 16 6 C 0.08 1.27 3.26 31.10 0.10 1.37 16 7 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 8 C -0.09 -1.96 4.13 30.59 0.13 -1.83 16 9 C -0.12 -2.50 5.37 29.85 0.16 -2.34 16 10 C 0.52 15.82 8.06 87.66 0.71 16.53 16 11 O -0.60 -23.63 16.71 -3.02 -0.05 -23.68 16 12 N -0.64 -17.98 3.44 -842.51 -2.90 -20.88 16 13 C 0.11 3.42 7.62 86.32 0.66 4.08 16 14 C -0.08 -2.16 0.77 -52.03 -0.04 -2.20 16 15 C 0.12 2.49 7.75 86.31 0.67 3.16 16 16 C -0.10 -3.59 5.22 30.60 0.16 -3.43 16 17 C 0.18 8.73 5.22 86.42 0.45 9.18 16 18 N -0.61 -29.78 2.96 -698.75 -2.07 -31.85 16 19 C -0.26 -13.96 9.56 84.03 0.80 -13.15 16 20 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 21 C -0.06 -3.10 4.89 84.86 0.42 -2.68 16 22 N -0.94 -56.50 11.21 21.65 0.24 -56.26 16 23 Si 0.97 44.81 29.59 68.60 2.03 46.84 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.14 5.36 6.39 86.42 0.55 5.91 16 28 C -0.10 -2.91 5.26 30.60 0.16 -2.75 16 29 O -0.39 -7.39 10.77 -148.98 -1.60 -8.99 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.83 7.87 -2.39 -0.02 0.81 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.05 7.87 -2.39 -0.02 1.04 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 38 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.11 2.05 7.96 -2.39 -0.02 2.03 16 41 H 0.10 2.67 8.07 -2.39 -0.02 2.65 16 42 H 0.05 1.77 7.41 -2.39 -0.02 1.75 16 43 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 44 H 0.12 1.75 8.09 -2.39 -0.02 1.73 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 1.80 8.01 -2.39 -0.02 1.78 16 47 H 0.05 2.86 5.98 -2.39 -0.01 2.84 16 48 H -0.01 -0.77 7.49 -2.39 -0.02 -0.79 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.01 0.38 8.07 -2.39 -0.02 0.36 16 51 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 52 H 0.09 1.96 8.12 -2.39 -0.02 1.94 16 53 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -73.33 410.98 2.65 -70.68 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.85 Total: 15.59 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.15 Total: 8.56 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.73 Total: -108.99 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.65 Total: -32.67 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.33 2.65 -70.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050761364.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.048 kcal (2) G-P(sol) polarization free energy of solvation -73.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds