Wall clock time and date at job start Tue Mar 31 2020 20:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.32858 * 2 1 4 4 C 1.54473 * 110.37206 * 237.63378 * 2 1 3 5 5 C 1.54683 * 104.07924 * 217.09493 * 4 2 1 6 6 C 1.54478 * 103.97757 * 0.13910 * 5 4 2 7 7 H 1.09003 * 110.36646 * 264.96153 * 6 5 4 8 8 C 1.52995 * 110.37493 * 142.74013 * 6 5 4 9 9 C 1.52999 * 109.47301 * 176.54598 * 8 6 5 10 10 C 1.50699 * 109.47349 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99581 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00230 * 179.97438 * 10 9 8 13 13 C 1.47662 * 134.45569 * 179.97438 * 12 10 9 14 14 C 1.53515 * 85.97762 * 204.33843 * 13 12 10 15 15 C 1.47667 * 134.45823 * 0.03115 * 12 10 9 16 16 C 1.52669 * 113.56668 * 222.23448 * 14 13 12 17 17 C 1.53337 * 109.11391 * 286.18323 * 16 14 13 18 18 N 1.46886 * 108.76132 * 307.59082 * 17 16 14 19 19 C 1.36936 * 120.46546 * 235.51724 * 18 17 16 20 20 H 1.07999 * 120.00310 * 28.43910 * 19 18 17 21 21 C 1.38808 * 119.99783 * 208.43326 * 19 18 17 22 22 N 1.31627 * 119.99977 * 17.64532 * 21 19 18 23 23 Si 1.86803 * 120.00148 * 197.63955 * 21 19 18 24 24 H 1.48495 * 109.47050 * 90.00770 * 23 21 19 25 25 H 1.48502 * 109.47041 * 210.00086 * 23 21 19 26 26 H 1.48498 * 109.46924 * 330.00269 * 23 21 19 27 27 C 1.46888 * 119.06110 * 55.53920 * 18 17 16 28 28 C 1.52666 * 113.56535 * 91.02030 * 14 13 12 29 29 O 1.44421 * 110.37274 * 122.25052 * 2 1 3 30 30 H 1.08999 * 109.46870 * 299.19698 * 1 2 3 31 31 H 1.08998 * 109.47393 * 59.20275 * 1 2 3 32 32 H 1.08999 * 109.46805 * 179.20346 * 1 2 3 33 33 H 1.09003 * 110.51215 * 335.83009 * 4 2 1 34 34 H 1.09006 * 110.51537 * 98.40529 * 4 2 1 35 35 H 1.08997 * 110.61612 * 241.48300 * 5 4 2 36 36 H 1.09007 * 110.48926 * 118.72444 * 5 4 2 37 37 H 1.09001 * 109.47452 * 56.54441 * 8 6 5 38 38 H 1.09000 * 109.47212 * 296.54565 * 8 6 5 39 39 H 1.09001 * 109.46995 * 59.99563 * 9 8 6 40 40 H 1.08999 * 109.46697 * 299.99643 * 9 8 6 41 41 H 1.09004 * 113.78886 * 90.07899 * 13 12 10 42 42 H 1.09003 * 113.79706 * 318.60419 * 13 12 10 43 43 H 1.09005 * 113.78797 * 41.38571 * 15 12 10 44 44 H 1.08999 * 113.79025 * 269.92912 * 15 12 10 45 45 H 1.08995 * 109.53153 * 46.07158 * 16 14 13 46 46 H 1.09002 * 109.53226 * 166.29402 * 16 14 13 47 47 H 1.09002 * 109.59015 * 187.80552 * 17 16 14 48 48 H 1.09006 * 109.70815 * 67.44065 * 17 16 14 49 49 H 0.96997 * 119.99883 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.58623 * 184.67516 * 27 18 17 51 51 H 1.09003 * 109.71321 * 64.31084 * 27 18 17 52 52 H 1.09003 * 109.53215 * 193.70098 * 28 14 13 53 53 H 1.09008 * 109.53265 * 313.84461 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7752 -1.2231 5 6 3.3207 -1.5054 -0.6848 6 6 3.3874 -1.0862 0.8006 7 1 4.0528 -0.2318 0.9241 8 6 3.8602 -2.2575 1.6638 9 6 4.0013 -1.7966 3.1159 10 6 4.4665 -2.9504 3.9663 11 8 4.6652 -4.0349 3.4608 12 7 4.6618 -2.7773 5.2886 13 6 5.0987 -3.6547 6.3930 14 6 4.3447 -2.6871 7.3160 15 6 4.5236 -1.6346 6.2136 16 6 5.0978 -2.3594 8.6029 17 6 5.0380 -3.5702 9.5418 18 7 3.6356 -3.9776 9.6988 19 6 3.0741 -4.0681 10.9444 20 1 3.4386 -3.4449 11.7477 21 6 2.0363 -4.9607 11.1748 22 7 1.8187 -5.9485 10.3325 23 14 0.9486 -4.7601 12.6801 24 1 -0.2063 -3.8893 12.3438 25 1 0.4545 -6.0914 13.1147 26 1 1.7327 -4.1404 13.7784 27 6 2.8441 -4.2870 8.5007 28 6 2.8892 -3.0809 7.5549 29 8 2.0328 -0.7225 1.1450 30 1 -0.3633 0.5013 0.8971 31 1 -0.3634 0.5261 -0.8827 32 1 -0.3633 -1.0276 -0.0143 33 1 1.3276 -1.4935 -1.5757 34 1 2.3407 -0.0861 -2.0224 35 1 4.2142 -1.1762 -1.2151 36 1 3.1999 -2.5852 -0.7719 37 1 4.8248 -2.6112 1.2996 38 1 3.1321 -3.0668 1.6087 39 1 3.0368 -1.4429 3.4801 40 1 4.7295 -0.9874 3.1710 41 1 6.1775 -3.6607 6.5493 42 1 4.6669 -4.6549 6.3574 43 1 3.6347 -1.0294 6.0351 44 1 5.4313 -1.0399 6.3165 45 1 6.1375 -2.1310 8.3687 46 1 4.6348 -1.4996 9.0873 47 1 5.4510 -3.2999 10.5137 48 1 5.6123 -4.3936 9.1169 49 1 1.0938 -6.5725 10.4936 50 1 1.8119 -4.4888 8.7867 51 1 3.2618 -5.1602 7.9995 52 1 2.3546 -2.2445 8.0053 53 1 2.4220 -3.3431 6.6056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050761365.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:48 Heat of formation + Delta-G solvation = -61.004682 kcal Electronic energy + Delta-G solvation = -29808.009640 eV Core-core repulsion = 25872.858071 eV Total energy + Delta-G solvation = -3935.151569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83500 -40.59072 -39.57886 -37.48777 -34.90730 -34.26790 -33.14621 -32.19191 -31.69363 -31.38730 -28.86010 -27.71667 -26.69340 -25.81331 -23.99477 -23.75396 -22.52698 -22.15715 -21.71444 -20.13909 -19.52825 -18.37476 -17.80355 -17.53096 -17.19971 -16.89195 -16.68664 -16.56087 -15.85069 -15.66585 -15.56163 -15.25046 -14.89867 -14.68441 -14.51443 -14.19282 -14.11725 -13.83078 -13.76147 -13.41578 -13.31629 -13.08504 -13.06068 -12.95300 -12.86785 -12.60888 -12.57976 -12.52382 -12.20807 -12.09216 -12.01089 -11.82452 -11.79657 -11.65897 -11.49879 -11.33977 -11.30283 -11.23472 -10.65366 -10.62565 -10.51830 -9.66775 -8.65198 -7.85673 -5.31710 1.47139 1.48581 1.57379 1.63264 1.85820 2.52453 2.89745 3.25703 3.35290 3.46931 3.69423 3.70231 3.76819 3.89303 3.95433 4.03561 4.06273 4.13237 4.20810 4.29630 4.36454 4.46307 4.49318 4.53374 4.54701 4.60460 4.64267 4.67927 4.68684 4.74298 4.79852 4.85891 4.91422 4.92211 4.95212 4.97001 5.06145 5.11330 5.14212 5.15785 5.20361 5.25516 5.27283 5.30728 5.33474 5.41742 5.55265 5.66935 5.75915 6.03311 6.41137 6.77287 7.13666 7.16245 7.89268 8.40241 9.20127 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.002244 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.784995 B =12476.020260 C =13346.542697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.077 3.923 7 H 0.089 0.911 8 C -0.093 4.093 9 C -0.119 4.119 10 C 0.523 3.477 11 O -0.599 6.599 12 N -0.643 5.643 13 C 0.110 3.890 14 C -0.077 4.077 15 C 0.121 3.879 16 C -0.103 4.103 17 C 0.138 3.862 18 N -0.608 5.608 19 C -0.256 4.256 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.939 5.939 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.300 1.300 26 H -0.265 1.265 27 C 0.181 3.819 28 C -0.100 4.100 29 O -0.395 6.395 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.010 0.990 49 H 0.247 0.753 50 H 0.050 0.950 51 H -0.014 1.014 52 H 0.065 0.935 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 18.499 -21.588 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.098 0.902 4 C -0.186 4.186 5 C -0.190 4.190 6 C 0.019 3.981 7 H 0.107 0.893 8 C -0.131 4.131 9 C -0.158 4.158 10 C 0.315 3.685 11 O -0.481 6.481 12 N -0.377 5.377 13 C -0.012 4.012 14 C -0.077 4.077 15 C 0.000 4.000 16 C -0.142 4.142 17 C 0.013 3.987 18 N -0.331 5.331 19 C -0.386 4.386 20 H 0.089 0.911 21 C -0.251 4.251 22 N -0.586 5.586 23 Si 0.794 3.206 24 H -0.213 1.213 25 H -0.227 1.227 26 H -0.189 1.189 27 C 0.055 3.945 28 C -0.139 4.139 29 O -0.315 6.315 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.062 0.938 43 H 0.115 0.885 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.028 0.972 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.004 0.996 52 H 0.084 0.916 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.009 17.748 -21.840 28.584 hybrid contribution -0.833 -1.113 0.769 1.589 sum 4.175 16.635 -21.071 27.168 Atomic orbital electron populations 1.21835 0.93052 1.02451 1.03121 1.23170 0.95672 0.95865 0.84875 0.90159 1.23038 0.97288 0.99924 0.98343 1.23033 0.99611 1.01326 0.95058 1.23071 0.84515 0.96664 0.93818 0.89331 1.21356 1.01880 0.96917 0.92948 1.21557 1.04095 0.95909 0.94288 1.21144 0.76324 0.90325 0.80722 1.90665 1.55021 1.29717 1.72680 1.50202 1.66003 1.15778 1.05683 1.23254 0.99972 0.95202 0.82817 1.21882 0.95438 0.95800 0.94629 1.23548 1.03956 0.89683 0.82816 1.21805 1.00264 0.98432 0.93735 1.21110 0.84842 0.94710 0.98073 1.44292 1.07492 1.79352 1.02011 1.19563 1.14948 1.14843 0.89282 0.91089 1.25843 1.03217 0.95131 1.00929 1.70215 1.32464 1.15700 1.40209 0.85278 0.79180 0.76293 0.79800 1.21273 1.22660 1.18908 1.20478 0.96097 0.92100 0.85858 1.21663 0.94841 0.99334 0.98062 1.89159 1.27834 1.75024 1.39486 0.92397 0.89189 0.92976 0.90954 0.88598 0.88575 0.91533 0.89895 0.93176 0.88321 0.86149 0.88094 0.93836 0.88528 0.85979 0.88639 0.90910 0.92400 0.97152 0.94350 0.93196 0.99639 0.91635 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.52 71.98 0.69 -1.25 16 2 C 0.06 0.87 3.92 31.10 0.12 0.99 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.15 -1.71 6.64 31.67 0.21 -1.50 16 5 C -0.15 -2.03 6.65 31.67 0.21 -1.82 16 6 C 0.08 1.25 3.25 31.09 0.10 1.35 16 7 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 8 C -0.09 -1.97 4.13 30.59 0.13 -1.84 16 9 C -0.12 -2.50 5.37 29.85 0.16 -2.34 16 10 C 0.52 15.83 8.06 87.66 0.71 16.53 16 11 O -0.60 -23.68 16.71 -3.06 -0.05 -23.73 16 12 N -0.64 -17.96 3.44 -842.53 -2.90 -20.86 16 13 C 0.11 3.43 7.63 86.32 0.66 4.09 16 14 C -0.08 -2.22 0.77 -52.04 -0.04 -2.26 16 15 C 0.12 2.49 7.74 86.30 0.67 3.16 16 16 C -0.10 -2.86 5.26 30.60 0.16 -2.70 16 17 C 0.14 5.34 6.39 86.42 0.55 5.89 16 18 N -0.61 -30.05 2.96 -698.73 -2.07 -32.12 16 19 C -0.26 -13.94 9.56 84.03 0.80 -13.13 16 20 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 21 C -0.06 -3.18 4.89 84.86 0.42 -2.77 16 22 N -0.94 -57.21 11.21 21.65 0.24 -56.97 16 23 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 27 C 0.18 8.91 5.22 86.42 0.45 9.36 16 28 C -0.10 -3.73 5.21 30.60 0.16 -3.57 16 29 O -0.39 -8.06 10.75 -148.98 -1.60 -9.66 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.07 0.89 7.86 -2.39 -0.02 0.87 16 34 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.04 7.87 -2.38 -0.02 1.02 16 37 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.10 2.10 7.96 -2.39 -0.02 2.09 16 40 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 2.70 8.07 -2.38 -0.02 2.68 16 42 H 0.04 1.69 7.41 -2.39 -0.02 1.68 16 43 H 0.10 1.74 8.09 -2.38 -0.02 1.72 16 44 H 0.12 1.68 8.09 -2.39 -0.02 1.66 16 45 H 0.10 1.95 8.12 -2.39 -0.02 1.93 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 2.18 7.92 -2.39 -0.02 2.16 16 48 H 0.01 0.42 8.08 -2.38 -0.02 0.40 16 49 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.05 2.83 5.98 -2.39 -0.01 2.82 16 51 H -0.01 -0.79 7.50 -2.39 -0.02 -0.80 16 52 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 53 H 0.05 1.74 8.02 -2.38 -0.02 1.72 16 Total: -1.00 -75.06 410.97 2.66 -72.40 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.85 Total: 15.47 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.15 Total: 8.20 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.73 Total: -109.94 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.65 Total: -33.39 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.06 2.66 -72.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050761365.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.398 kcal (2) G-P(sol) polarization free energy of solvation -75.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds