Wall clock time and date at job start Tue Mar 31 2020 20:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.82238 * 2 1 4 4 C 1.54388 * 109.90417 * 120.93346 * 2 1 3 5 5 C 1.55309 * 102.24964 * 140.91398 * 4 2 1 6 6 C 1.54949 * 100.94401 * 325.86357 * 5 4 2 7 7 H 1.08994 * 110.31183 * 277.53498 * 6 5 4 8 8 C 1.52995 * 110.30937 * 155.35778 * 6 5 4 9 9 C 1.52996 * 109.47256 * 177.83316 * 8 6 5 10 10 C 1.50702 * 109.47473 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00132 * 180.02562 * 10 9 8 13 13 C 1.47163 * 136.00312 * 359.63121 * 12 10 9 14 14 C 1.52670 * 87.96524 * 206.73822 * 13 12 10 15 15 C 1.47163 * 135.99708 * 180.02562 * 12 10 9 16 16 C 1.52551 * 113.91133 * 88.15315 * 14 13 12 17 17 C 1.53354 * 109.13029 * 190.30976 * 16 14 13 18 18 N 1.46892 * 108.74779 * 307.75851 * 17 16 14 19 19 C 1.36939 * 120.46114 * 235.60192 * 18 17 16 20 20 H 1.08001 * 120.00100 * 28.47114 * 19 18 17 21 21 C 1.38813 * 119.99777 * 208.46989 * 19 18 17 22 22 N 1.31615 * 120.00083 * 17.65224 * 21 19 18 23 23 Si 1.86798 * 119.99698 * 197.65258 * 21 19 18 24 24 H 1.48501 * 109.47283 * 90.00035 * 23 21 19 25 25 H 1.48502 * 109.46905 * 209.99873 * 23 21 19 26 26 H 1.48499 * 109.47045 * 329.99812 * 23 21 19 27 27 C 1.46887 * 119.07303 * 55.62803 * 18 17 16 28 28 C 1.52556 * 114.24935 * 220.75082 * 14 13 12 29 29 O 1.43237 * 109.82973 * 239.11285 * 2 1 3 30 30 H 1.09000 * 109.46993 * 179.43230 * 1 2 3 31 31 H 1.08996 * 109.47400 * 299.43090 * 1 2 3 32 32 H 1.08998 * 109.47207 * 59.43569 * 1 2 3 33 33 H 1.08999 * 110.84543 * 259.10398 * 4 2 1 34 34 H 1.08994 * 110.84855 * 22.72724 * 4 2 1 35 35 H 1.08998 * 111.12720 * 83.78542 * 5 4 2 36 36 H 1.09000 * 111.12358 * 207.94847 * 5 4 2 37 37 H 1.08997 * 109.47259 * 297.84033 * 8 6 5 38 38 H 1.09003 * 109.47174 * 57.83824 * 8 6 5 39 39 H 1.08997 * 109.47573 * 300.00525 * 9 8 6 40 40 H 1.09000 * 109.47100 * 60.00330 * 9 8 6 41 41 H 1.09004 * 113.48819 * 321.43926 * 13 12 10 42 42 H 1.09001 * 113.49053 * 91.94269 * 13 12 10 43 43 H 1.08997 * 113.49063 * 268.05653 * 15 12 10 44 44 H 1.08998 * 113.49059 * 38.51403 * 15 12 10 45 45 H 1.09002 * 109.53127 * 310.20159 * 16 14 13 46 46 H 1.09000 * 109.53127 * 70.41378 * 16 14 13 47 47 H 1.09000 * 109.59298 * 187.97822 * 17 16 14 48 48 H 1.09000 * 109.71216 * 67.61146 * 17 16 14 49 49 H 0.96997 * 120.00108 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.59059 * 184.59073 * 27 18 17 51 51 H 1.09000 * 109.71788 * 64.21467 * 27 18 17 52 52 H 1.08995 * 109.52507 * 289.73553 * 28 14 13 53 53 H 1.08998 * 109.52565 * 49.88229 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 6 2.0556 -0.7462 1.2452 5 6 3.2755 -1.5201 0.6750 6 6 2.7765 -1.8427 -0.7560 7 1 2.1430 -2.7296 -0.7448 8 6 3.9639 -2.0486 -1.6986 9 6 3.4510 -2.4187 -3.0917 10 6 4.6205 -2.6222 -4.0200 11 8 5.7529 -2.4851 -3.6078 12 7 4.4082 -2.9564 -5.3083 13 6 3.2325 -3.2123 -6.1556 14 6 4.1172 -4.1089 -7.0183 15 6 5.2506 -3.2323 -6.4830 16 6 4.1759 -5.5582 -6.5459 17 6 5.2784 -6.2939 -7.3173 18 7 5.0664 -6.0873 -8.7561 19 6 4.9490 -7.1583 -9.6013 20 1 4.5578 -8.0956 -9.2343 21 6 5.3328 -7.0390 -10.9300 22 7 6.1155 -6.0487 -11.3026 23 14 4.7383 -8.2842 -12.1892 24 1 3.4557 -7.8205 -12.7766 25 1 5.7532 -8.4242 -13.2642 26 1 4.5335 -9.5979 -11.5277 27 6 4.9826 -4.7159 -9.2754 28 6 3.8776 -3.9689 -8.5184 29 8 2.0159 -0.6917 -1.1563 30 1 -0.3633 -1.0276 -0.0102 31 1 -0.3634 0.5049 0.8950 32 1 -0.3633 0.5226 -0.8849 33 1 2.3687 -0.0420 2.0160 34 1 1.3043 -1.4357 1.6301 35 1 4.1637 -0.8889 0.6484 36 1 3.4613 -2.4328 1.2413 37 1 4.5447 -1.1282 -1.7578 38 1 4.5945 -2.8523 -1.3184 39 1 2.8702 -3.3392 -3.0325 40 1 2.8203 -1.6151 -3.4720 41 1 2.4370 -3.7532 -5.6431 42 1 2.8720 -2.3259 -6.6778 43 1 5.4446 -2.3515 -7.0951 44 1 6.1570 -3.7894 -6.2464 45 1 4.3978 -5.5851 -5.4790 46 1 3.2167 -6.0413 -6.7319 47 1 5.2345 -7.3592 -7.0907 48 1 6.2534 -5.8993 -7.0311 49 1 6.3840 -5.9656 -12.2309 50 1 4.7438 -4.7417 -10.3387 51 1 5.9353 -4.2076 -9.1270 52 1 2.9080 -4.3961 -8.7738 53 1 3.8951 -2.9143 -8.7933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050761366.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:52 Heat of formation + Delta-G solvation = -57.085304 kcal Electronic energy + Delta-G solvation = -29666.321631 eV Core-core repulsion = 25731.340020 eV Total energy + Delta-G solvation = -3934.981612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.97730 -40.64377 -39.61127 -37.55238 -34.89947 -34.25295 -33.17237 -32.35574 -31.65549 -31.24913 -28.93926 -27.62798 -26.65740 -25.85755 -24.03715 -23.75748 -22.52175 -22.43039 -21.34788 -20.19034 -19.45789 -18.41112 -17.98355 -17.87372 -17.05757 -16.85306 -16.78148 -16.46492 -15.75057 -15.63104 -15.30635 -15.20921 -14.91885 -14.64447 -14.55034 -14.30152 -14.17503 -13.88511 -13.81712 -13.42350 -13.25324 -13.10596 -13.04006 -12.90804 -12.81984 -12.62904 -12.61547 -12.56482 -12.23910 -12.04838 -12.00544 -11.80353 -11.79651 -11.69063 -11.59746 -11.34704 -11.26676 -11.15286 -10.70751 -10.47319 -10.42423 -9.70377 -8.63637 -7.84396 -5.30210 1.49167 1.50185 1.58937 1.60883 1.86856 2.53651 2.84145 3.24618 3.34957 3.46179 3.63290 3.71463 3.78568 3.85538 3.91090 4.04626 4.11938 4.15046 4.26099 4.31000 4.36263 4.44833 4.49449 4.51947 4.54556 4.61512 4.62653 4.70193 4.72967 4.76376 4.79160 4.82312 4.88719 4.92782 4.93497 4.98636 5.04195 5.08210 5.12689 5.15058 5.21359 5.25511 5.31629 5.36999 5.38074 5.38336 5.55981 5.68395 5.82522 6.19665 6.42873 6.79211 7.12022 7.18637 7.89923 8.41101 9.21108 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029944 B = 0.001942 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.865229 B =14414.762770 C =14604.556697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.065 3.935 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.153 4.153 6 C 0.082 3.918 7 H 0.083 0.917 8 C -0.097 4.097 9 C -0.118 4.118 10 C 0.532 3.468 11 O -0.596 6.596 12 N -0.644 5.644 13 C 0.119 3.881 14 C -0.077 4.077 15 C 0.107 3.893 16 C -0.090 4.090 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.260 4.260 20 H 0.065 0.935 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.270 1.270 27 C 0.175 3.825 28 C -0.108 4.108 29 O -0.396 6.396 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.002 0.998 49 H 0.249 0.751 50 H 0.056 0.944 51 H -0.007 1.007 52 H 0.067 0.933 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 11.600 23.752 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.093 0.907 4 C -0.183 4.183 5 C -0.191 4.191 6 C 0.025 3.975 7 H 0.101 0.899 8 C -0.135 4.135 9 C -0.157 4.157 10 C 0.324 3.676 11 O -0.477 6.477 12 N -0.378 5.378 13 C -0.003 4.003 14 C -0.078 4.078 15 C -0.016 4.016 16 C -0.129 4.129 17 C 0.017 3.983 18 N -0.330 5.330 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.195 1.195 27 C 0.049 3.951 28 C -0.148 4.148 29 O -0.317 6.317 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.011 0.989 52 H 0.086 0.914 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.408 11.813 23.859 29.809 hybrid contribution 0.693 -0.589 -1.050 1.389 sum -12.715 11.223 22.809 28.423 Atomic orbital electron populations 1.22115 0.94115 1.02630 1.02714 1.22884 0.94982 0.96314 0.85070 0.90672 1.23186 0.97557 0.99935 0.97596 1.23318 0.98709 1.01980 0.95063 1.23035 0.91621 0.89440 0.93440 0.89911 1.21435 0.96718 1.02203 0.93109 1.21540 0.95184 1.05108 0.93862 1.21036 0.91189 0.74490 0.80900 1.90667 1.26849 1.54037 1.76196 1.49807 1.12501 1.68132 1.07348 1.23204 0.89548 0.98641 0.88889 1.21533 0.96022 0.94763 0.95493 1.23032 0.95855 0.98137 0.84612 1.21499 0.99984 0.93254 0.98185 1.20986 0.94932 0.97971 0.84372 1.44290 1.83910 1.02321 1.02518 1.19509 1.34604 0.93335 0.91575 0.91689 1.25786 0.98034 1.00205 1.00613 1.70189 1.36355 1.35099 1.16405 0.85287 0.77268 0.79250 0.78751 1.20918 1.22534 1.19504 1.20621 0.93649 0.83296 0.97510 1.21833 0.99960 1.00314 0.92659 1.88426 1.70744 1.41021 1.31499 0.92258 0.90015 0.92713 0.88854 0.89358 0.90821 0.88467 0.92548 0.90341 0.86935 0.87641 0.87979 0.87431 0.89412 0.93281 0.91810 0.90765 0.93006 0.98008 0.94171 0.92553 0.98896 0.91403 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.45 71.98 0.68 -0.98 16 2 C 0.06 0.85 4.15 31.07 0.13 0.98 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.15 -1.35 6.55 31.86 0.21 -1.14 16 5 C -0.15 -1.80 6.57 32.05 0.21 -1.59 16 6 C 0.08 1.25 3.43 31.26 0.11 1.35 16 7 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 8 C -0.10 -1.90 4.25 30.59 0.13 -1.77 16 9 C -0.12 -2.34 5.44 29.85 0.16 -2.18 16 10 C 0.53 15.40 8.08 87.66 0.71 16.11 16 11 O -0.60 -22.55 16.76 -3.04 -0.05 -22.60 16 12 N -0.64 -17.61 3.46 -858.55 -2.97 -20.58 16 13 C 0.12 2.52 7.56 83.22 0.63 3.15 16 14 C -0.08 -2.24 0.83 -52.60 -0.04 -2.28 16 15 C 0.11 3.34 7.56 83.32 0.63 3.97 16 16 C -0.09 -2.86 5.25 30.56 0.16 -2.70 16 17 C 0.14 5.94 6.41 86.42 0.55 6.49 16 18 N -0.61 -29.87 2.96 -698.63 -2.07 -31.93 16 19 C -0.26 -14.11 9.56 84.03 0.80 -13.30 16 20 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 21 C -0.05 -2.82 4.89 84.86 0.42 -2.41 16 22 N -0.93 -55.00 11.21 21.65 0.24 -54.75 16 23 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 C 0.17 8.07 5.27 86.43 0.46 8.53 16 28 C -0.11 -3.57 5.31 30.57 0.16 -3.41 16 29 O -0.40 -7.24 10.35 -148.98 -1.54 -8.78 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.65 7.85 -2.39 -0.02 0.63 16 35 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 1.97 7.91 -2.39 -0.02 1.95 16 41 H 0.10 1.69 8.10 -2.38 -0.02 1.67 16 42 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 43 H 0.09 2.61 8.06 -2.39 -0.02 2.59 16 44 H 0.05 1.80 7.54 -2.39 -0.02 1.78 16 45 H 0.06 1.88 7.95 -2.39 -0.02 1.86 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 48 H 0.00 0.09 7.61 -2.39 -0.02 0.07 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.06 2.98 5.97 -2.38 -0.01 2.96 16 51 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 52 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 53 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 Total: -1.00 -70.91 411.31 2.60 -68.31 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.85 Total: 15.03 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.10 Total: 8.82 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.80 Total: -107.27 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.59 Total: -31.38 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.91 2.60 -68.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050761366.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.229 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds