Wall clock time and date at job start Tue Mar 31 2020 20:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 C 1.52996 * 109.47165 * 119.99850 * 2 1 3 5 5 C 1.52999 * 109.47362 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47432 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47171 * 59.99826 * 5 4 2 8 8 O 1.21281 * 120.00180 * 354.49417 * 7 5 4 9 9 N 1.34780 * 120.00117 * 174.49068 * 7 5 4 10 10 C 1.47130 * 121.06033 * 4.80426 * 9 7 5 11 11 C 1.53224 * 108.72854 * 232.32025 * 10 9 7 12 12 O 1.43126 * 109.34969 * 305.79912 * 11 10 9 13 13 C 1.42360 * 113.98771 * 59.78546 * 12 11 10 14 14 C 1.52921 * 114.30360 * 74.95439 * 13 12 11 15 15 N 1.47167 * 87.84469 * 88.27185 * 14 13 12 16 16 C 1.36937 * 135.99961 * 206.64564 * 15 14 13 17 17 H 1.07995 * 119.99941 * 6.49367 * 16 15 14 18 18 C 1.38808 * 119.99904 * 186.48797 * 16 15 14 19 19 N 1.31619 * 119.99921 * 172.24903 * 18 16 15 20 20 Si 1.86797 * 120.00269 * 352.24904 * 18 16 15 21 21 H 1.48503 * 109.47389 * 174.82641 * 20 18 16 22 22 H 1.48509 * 109.47139 * 294.82926 * 20 18 16 23 23 H 1.48501 * 109.46958 * 54.82696 * 20 18 16 24 24 C 1.47179 * 88.00243 * 26.90111 * 15 14 13 25 25 C 1.47358 * 121.06127 * 184.82881 * 9 7 5 26 26 C 1.53002 * 109.46867 * 299.99924 * 5 4 2 27 27 C 1.53002 * 109.47137 * 60.00200 * 26 5 4 28 28 H 1.08998 * 109.47196 * 60.00051 * 27 26 5 29 29 C 1.53002 * 109.47137 * 180.02562 * 27 26 5 30 30 C 1.52996 * 109.47471 * 239.99775 * 2 1 3 31 31 H 1.09003 * 109.47197 * 300.00474 * 1 2 3 32 32 H 1.09006 * 109.47438 * 60.00248 * 1 2 3 33 33 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47452 * 59.99834 * 4 2 1 35 35 H 1.09003 * 109.46798 * 299.99920 * 4 2 1 36 36 H 1.08996 * 109.59516 * 112.54513 * 10 9 7 37 37 H 1.09004 * 109.72020 * 352.16831 * 10 9 7 38 38 H 1.09003 * 109.48876 * 185.83846 * 11 10 9 39 39 H 1.08995 * 109.51290 * 65.77754 * 11 10 9 40 40 H 1.09007 * 113.48977 * 333.52785 * 14 13 12 41 41 H 1.09002 * 113.49790 * 203.01929 * 14 13 12 42 42 H 0.96997 * 120.00262 * 5.38344 * 19 18 16 43 43 H 1.09005 * 113.48741 * 87.84251 * 24 15 14 44 44 H 1.08998 * 113.49203 * 218.35223 * 24 15 14 45 45 H 1.08998 * 109.74523 * 12.08775 * 25 9 7 46 46 H 1.09001 * 109.74599 * 251.36269 * 25 9 7 47 47 H 1.09012 * 109.46961 * 179.97438 * 26 5 4 48 48 H 1.09003 * 109.47358 * 299.99811 * 26 5 4 49 49 H 1.08995 * 109.47320 * 179.97438 * 29 27 26 50 50 H 1.09007 * 109.46843 * 300.00055 * 29 27 26 51 51 H 1.09003 * 109.47358 * 59.99611 * 29 27 26 52 52 H 1.08991 * 109.47281 * 300.00372 * 30 2 1 53 53 H 1.09012 * 109.46907 * 60.00018 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5699 -0.7207 1.2496 6 1 3.9333 -1.2349 2.1393 7 6 4.0718 0.7003 1.2498 8 8 3.2880 1.6203 1.1490 9 7 5.3917 0.9489 1.3622 10 6 6.3718 -0.1482 1.3807 11 6 7.2712 0.0162 2.6103 12 8 7.8447 1.3275 2.6064 13 6 6.8854 2.3789 2.6369 14 6 6.2260 2.5898 4.0004 15 7 7.3313 3.5033 4.3315 16 6 7.9513 3.9246 5.4775 17 1 7.6953 3.4763 6.4261 18 6 8.9089 4.9278 5.4199 19 7 9.3939 5.4392 6.5315 20 14 9.5093 5.5521 3.7649 21 1 10.4291 6.6993 3.9725 22 1 10.2284 4.4629 3.0562 23 1 8.3476 5.9902 2.9501 24 6 7.4738 3.7703 2.8912 25 6 5.8991 2.3280 1.4711 26 6 4.0804 -1.4416 0.0004 27 6 3.5705 -0.7204 -1.2489 28 1 3.9335 0.3074 -1.2487 29 6 4.0804 -1.4417 -2.4982 30 6 2.0400 -0.7213 -1.2492 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6766 -1.7488 1.2493 35 1 1.6766 -0.2073 2.1392 36 1 6.9789 -0.1114 0.4762 37 1 5.8521 -1.1050 1.4333 38 1 8.0665 -0.7287 2.5813 39 1 6.6790 -0.1191 3.5152 40 1 6.2055 1.6910 4.6169 41 1 5.2563 3.0842 3.9424 42 1 9.1414 5.0629 7.3891 43 1 6.8394 4.5821 2.5350 44 1 8.5100 3.8713 2.5685 45 1 5.0709 3.0113 1.6592 46 1 6.4058 2.6080 0.5475 47 1 5.1705 -1.4408 0.0004 48 1 3.7175 -2.4694 0.0002 49 1 3.7168 -0.9282 -3.3881 50 1 5.1705 -1.4417 -2.4981 51 1 3.7171 -2.4694 -2.4981 52 1 1.6767 -1.7488 -1.2492 53 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053544020.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:36 Heat of formation + Delta-G solvation = -42.403508 kcal Electronic energy + Delta-G solvation = -31750.156137 eV Core-core repulsion = 27815.811176 eV Total energy + Delta-G solvation = -3934.344961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.22596 -41.09370 -38.71051 -37.99621 -35.95448 -34.66209 -34.19818 -33.20896 -31.63697 -29.55007 -27.92501 -27.45012 -27.36687 -27.05595 -24.63947 -24.26554 -22.82847 -21.48497 -21.42470 -20.63016 -19.87113 -19.59820 -18.01908 -17.83359 -17.30898 -16.72097 -16.46967 -16.31732 -15.98262 -15.70420 -15.57668 -15.36190 -15.21853 -15.03945 -14.83325 -14.64514 -14.61124 -13.93934 -13.48455 -13.46826 -13.45002 -13.21352 -13.04737 -12.98067 -12.75588 -12.75024 -12.62511 -12.45664 -12.38498 -12.19367 -11.99606 -11.83523 -11.56546 -11.51827 -11.47631 -11.25648 -11.05413 -10.91483 -10.85610 -10.74492 -10.29397 -9.57547 -9.24178 -8.70063 -5.51855 1.36843 1.47883 1.63369 1.66674 1.85896 2.50796 2.51393 2.84540 3.14902 3.33059 3.44184 3.69048 3.71207 3.77133 3.87340 3.98098 4.07391 4.19287 4.21653 4.24074 4.30296 4.39929 4.43245 4.45409 4.47399 4.53889 4.57017 4.60275 4.63140 4.68654 4.77474 4.81690 4.85775 4.87586 4.90460 4.91714 4.97162 5.00963 5.03516 5.08710 5.09689 5.15261 5.28094 5.30421 5.40624 5.46971 5.47693 5.55159 5.75075 5.88414 6.23016 6.39604 6.63680 7.18743 7.26132 8.18695 8.85331 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.003058 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.825330 B = 9152.779977 C = 9519.016675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 H 0.070 0.930 4 C -0.090 4.090 5 C -0.105 4.105 6 H 0.115 0.885 7 C 0.519 3.481 8 O -0.570 6.570 9 N -0.613 5.613 10 C 0.072 3.928 11 C 0.035 3.965 12 O -0.364 6.364 13 C 0.089 3.911 14 C 0.105 3.895 15 N -0.651 5.651 16 C -0.292 4.292 17 H 0.047 0.953 18 C -0.083 4.083 19 N -0.968 5.968 20 Si 1.107 2.893 21 H -0.301 1.301 22 H -0.274 1.274 23 H -0.254 1.254 24 C 0.106 3.894 25 C 0.111 3.889 26 C -0.110 4.110 27 C -0.094 4.094 28 H 0.040 0.960 29 C -0.141 4.141 30 C -0.101 4.101 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.246 0.754 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.048 0.952 50 H 0.059 0.941 51 H 0.068 0.932 52 H 0.076 0.924 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 -21.773 -21.197 33.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.128 4.128 5 C -0.126 4.126 6 H 0.132 0.868 7 C 0.310 3.690 8 O -0.449 6.449 9 N -0.347 5.347 10 C -0.050 4.050 11 C -0.041 4.041 12 O -0.282 6.282 13 C 0.046 3.954 14 C -0.021 4.021 15 N -0.379 5.379 16 C -0.420 4.420 17 H 0.065 0.935 18 C -0.274 4.274 19 N -0.614 5.614 20 Si 0.933 3.067 21 H -0.229 1.229 22 H -0.201 1.201 23 H -0.179 1.179 24 C -0.019 4.019 25 C -0.013 4.013 26 C -0.147 4.147 27 C -0.113 4.113 28 H 0.059 0.941 29 C -0.199 4.199 30 C -0.139 4.139 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.094 0.906 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.137 -20.096 -21.739 32.388 hybrid contribution -1.119 -0.468 1.950 2.297 sum -14.256 -20.564 -19.789 31.901 Atomic orbital electron populations 1.21760 0.95189 1.01894 1.00985 1.21417 0.95623 1.01068 0.94913 0.91153 1.21377 0.92261 1.01400 0.97776 1.21451 0.97888 0.91050 1.02174 0.86753 1.21294 0.80775 0.92696 0.74217 1.90602 1.55176 1.48246 1.50878 1.48289 1.06500 1.07005 1.72879 1.22859 0.91319 0.91371 0.99443 1.23319 0.99125 0.84275 0.97417 1.87931 1.31460 1.14520 1.94332 1.22642 0.89924 0.89265 0.93522 1.22972 0.91640 0.93137 0.94390 1.45894 1.36926 1.53445 1.01648 1.19959 1.18647 1.18422 0.84934 0.93460 1.27113 0.97172 0.95624 1.07493 1.71030 1.51107 1.41633 0.97598 0.83294 0.76810 0.75503 0.71123 1.22891 1.20080 1.17928 1.22978 1.00247 0.94324 0.84340 1.21844 0.96810 0.84960 0.97695 1.21896 1.01811 1.00080 0.90905 1.21128 0.95785 0.98612 0.95767 0.94115 1.21774 1.01169 1.00726 0.96199 1.21612 0.94688 1.00855 0.96735 0.93902 0.93096 0.91656 0.89112 0.93524 0.88574 0.84805 0.84866 0.93524 0.94002 0.93162 0.94524 0.90465 0.92507 0.89126 0.89029 0.89354 0.88165 0.93246 0.92212 0.91295 0.90581 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.19 71.98 0.66 -1.65 16 2 C -0.11 -2.06 2.43 -10.80 -0.03 -2.09 16 3 H 0.07 1.85 5.32 -2.39 -0.01 1.84 16 4 C -0.09 -1.47 4.40 30.59 0.13 -1.34 16 5 C -0.10 -1.55 2.19 -11.54 -0.03 -1.58 16 6 H 0.11 1.28 7.63 -2.39 -0.02 1.27 16 7 C 0.52 12.08 5.62 87.66 0.49 12.57 16 8 O -0.57 -17.80 13.00 -3.03 -0.04 -17.83 16 9 N -0.61 -13.69 3.03 -817.99 -2.48 -16.17 16 10 C 0.07 1.10 5.23 86.33 0.45 1.55 16 11 C 0.04 0.76 6.90 72.06 0.50 1.26 16 12 O -0.36 -12.22 10.55 -148.98 -1.57 -13.79 16 13 C 0.09 3.08 1.29 -10.82 -0.01 3.07 16 14 C 0.10 4.33 7.90 83.32 0.66 4.98 16 15 N -0.65 -33.44 3.70 -738.72 -2.73 -36.17 16 16 C -0.29 -17.95 11.08 84.03 0.93 -17.02 16 17 H 0.05 3.13 8.05 -2.91 -0.02 3.11 16 18 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 19 N -0.97 -64.66 13.70 21.65 0.30 -64.36 16 20 Si 1.11 55.26 25.13 68.60 1.72 56.98 16 21 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 22 H -0.27 -12.83 6.68 99.48 0.66 -12.16 16 23 H -0.25 -11.23 6.07 99.48 0.60 -10.62 16 24 C 0.11 4.48 5.13 83.42 0.43 4.90 16 25 C 0.11 3.08 5.81 86.14 0.50 3.58 16 26 C -0.11 -1.08 4.29 30.60 0.13 -0.95 16 27 C -0.09 -1.27 2.50 -10.78 -0.03 -1.30 16 28 H 0.04 0.79 7.22 -2.39 -0.02 0.78 16 29 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 30 C -0.10 -1.44 4.49 30.61 0.14 -1.31 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.13 1.12 4.54 -2.38 -0.01 1.11 16 38 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.09 7.30 -2.39 -0.02 1.08 16 40 H 0.04 1.73 7.36 -2.38 -0.02 1.71 16 41 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 42 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 43 H 0.08 3.02 7.66 -2.38 -0.02 3.00 16 44 H 0.06 2.47 4.68 -2.39 -0.01 2.46 16 45 H 0.09 2.79 6.94 -2.39 -0.02 2.77 16 46 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.09 0.66 5.16 -2.38 -0.01 0.64 16 48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 51 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -80.38 384.60 1.96 -78.42 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.70 Total: 13.68 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 6.06 Total: -0.76 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.91 Total: -116.71 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.61 Total: -31.62 kcal Atomic # 14 Polarization: 55.26 SS G_CDS: 1.72 Total: 56.98 kcal Total: -80.38 1.96 -78.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053544020.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.017 kcal (2) G-P(sol) polarization free energy of solvation -80.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds