Wall clock time and date at job start Tue Mar 31 2020 20:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47277 * 2 1 4 4 C 1.53003 * 109.47151 * 240.00087 * 2 1 3 5 5 C 1.53000 * 109.47503 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.47231 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00190 * 337.46594 * 6 5 4 8 8 N 1.34775 * 119.99530 * 157.46544 * 6 5 4 9 9 C 1.47225 * 121.11599 * 175.24892 * 8 6 5 10 10 C 1.53223 * 108.75615 * 127.78536 * 9 8 6 11 11 O 1.43102 * 109.34482 * 54.13174 * 10 9 8 12 12 C 1.42487 * 113.96963 * 300.03536 * 11 10 9 13 13 C 1.53436 * 113.81741 * 189.53370 * 12 11 10 14 14 N 1.47675 * 85.97963 * 91.23689 * 13 12 11 15 15 C 1.36933 * 134.45796 * 204.33286 * 14 13 12 16 16 H 1.07999 * 120.00039 * 179.97438 * 15 14 13 17 17 C 1.38819 * 119.99959 * 359.94400 * 15 14 13 18 18 N 1.31615 * 119.99965 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00013 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46974 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46784 * 120.00221 * 19 17 15 22 22 H 1.48497 * 109.47158 * 240.00465 * 19 17 15 23 23 C 1.47672 * 91.08630 * 24.29636 * 14 13 12 24 24 C 1.47334 * 121.05685 * 355.22602 * 8 6 5 25 25 C 1.53005 * 109.46631 * 59.99983 * 5 4 2 26 26 C 1.53003 * 109.47191 * 300.00208 * 25 5 4 27 27 H 1.08998 * 109.47065 * 180.02562 * 26 25 5 28 28 C 1.52998 * 109.46731 * 300.00114 * 26 25 5 29 29 C 1.52997 * 109.47151 * 60.00305 * 26 25 5 30 30 H 1.08995 * 109.47602 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46989 * 300.00132 * 1 2 3 32 32 H 1.09008 * 109.47120 * 59.99617 * 1 2 3 33 33 H 1.08998 * 109.47065 * 60.00078 * 4 2 1 34 34 H 1.09001 * 109.46959 * 300.00107 * 4 2 1 35 35 H 1.08998 * 109.47202 * 300.00798 * 5 4 2 36 36 H 1.09009 * 109.57510 * 8.00819 * 9 8 6 37 37 H 1.08997 * 109.71331 * 247.64672 * 9 8 6 38 38 H 1.09007 * 109.49397 * 294.16876 * 10 9 8 39 39 H 1.08999 * 109.51600 * 174.10759 * 10 9 8 40 40 H 1.09003 * 113.79607 * 205.50271 * 13 12 11 41 41 H 1.09003 * 113.79095 * 336.96855 * 13 12 11 42 42 H 0.97003 * 120.00164 * 179.97438 * 18 17 15 43 43 H 1.09003 * 113.79281 * 221.44873 * 23 14 13 44 44 H 1.08992 * 113.90269 * 89.98734 * 23 14 13 45 45 H 1.08996 * 109.74957 * 108.72693 * 24 8 6 46 46 H 1.09008 * 109.74856 * 348.05393 * 24 8 6 47 47 H 1.09001 * 109.47330 * 60.00178 * 25 5 4 48 48 H 1.08999 * 109.46875 * 180.02562 * 25 5 4 49 49 H 1.09009 * 109.46965 * 180.02562 * 28 26 25 50 50 H 1.08996 * 109.47465 * 299.99605 * 28 26 25 51 51 H 1.08998 * 109.47254 * 60.00229 * 28 26 25 52 52 H 1.08999 * 109.46989 * 180.02562 * 29 26 25 53 53 H 1.08995 * 109.47602 * 59.99789 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0723 -1.4317 -2.4798 7 8 3.3599 -2.2284 -3.0532 8 7 5.3131 -1.1821 -2.9429 9 6 5.8672 -1.9364 -4.0793 10 6 6.3794 -0.9430 -5.1273 11 8 7.2965 -0.0340 -4.5105 12 6 6.7304 0.7270 -3.4472 13 6 7.6377 1.8567 -2.9424 14 7 6.9527 2.7095 -3.9345 15 6 7.2830 3.8581 -4.6029 16 1 6.5842 4.2977 -5.2991 17 6 8.5159 4.4577 -4.3851 18 7 9.3675 3.9220 -3.5365 19 14 8.9663 6.0249 -5.2963 20 1 7.8444 6.4204 -6.1853 21 1 9.2269 7.1098 -4.3163 22 1 10.1854 5.7907 -6.1113 23 6 5.7689 1.8268 -3.9176 24 6 6.1593 -0.1444 -2.3281 25 6 4.0804 -1.4417 -0.0004 26 6 3.5704 -0.7204 1.2489 27 1 3.9345 -1.2338 2.1388 28 6 4.0800 0.7222 1.2485 29 6 2.0405 -0.7210 1.2492 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6767 -0.2074 -2.1392 34 1 1.6766 -1.7489 -1.2493 35 1 3.9330 0.3070 -1.2498 36 1 5.0886 -2.5610 -4.5174 37 1 6.6902 -2.5641 -3.7377 38 1 5.5390 -0.3862 -5.5421 39 1 6.8860 -1.4850 -5.9258 40 1 7.4473 2.1450 -1.9086 41 1 8.6953 1.6989 -3.1537 42 1 10.2292 4.3407 -3.3846 43 1 5.3418 1.6451 -4.9039 44 1 5.0214 2.1046 -3.1747 45 1 6.9730 -0.6130 -1.7745 46 1 5.5601 0.4679 -1.6540 47 1 3.7175 -2.4695 -0.0002 48 1 5.1704 -1.4409 -0.0004 49 1 3.7170 1.2360 2.1388 50 1 5.1699 0.7226 1.2484 51 1 3.7163 1.2358 0.3586 52 1 1.6772 -0.2068 2.1390 53 1 1.6774 -1.7487 1.2494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053544021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:13 Heat of formation + Delta-G solvation = -54.540227 kcal Electronic energy + Delta-G solvation = -31725.925066 eV Core-core repulsion = 27791.053817 eV Total energy + Delta-G solvation = -3934.871249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.01509 -40.75633 -39.28939 -37.64035 -35.87544 -34.25610 -34.04194 -32.93178 -31.40231 -29.43612 -27.69276 -27.59014 -27.30636 -26.87206 -25.30110 -24.13420 -22.96057 -22.19969 -20.64517 -19.99811 -19.56992 -18.79403 -18.22409 -17.73470 -17.06351 -16.81863 -16.39527 -16.15408 -15.85165 -15.77678 -15.47000 -15.37470 -15.02458 -14.80011 -14.75827 -14.41381 -14.33342 -14.01470 -13.88981 -13.49963 -13.34091 -13.16696 -12.99225 -12.90293 -12.78187 -12.62936 -12.50882 -12.43075 -12.16355 -12.08738 -11.94891 -11.86674 -11.79899 -11.69634 -11.50217 -11.31440 -11.11581 -10.99579 -10.80781 -10.78958 -10.54649 -9.56435 -8.91308 -7.90032 -5.22511 1.45891 1.46949 1.54363 1.56724 1.83596 2.46578 2.67622 3.26005 3.31481 3.35352 3.60885 3.67713 3.74070 3.77292 3.87782 4.06455 4.10934 4.17386 4.18427 4.24849 4.35477 4.38028 4.45067 4.49698 4.53598 4.61710 4.65338 4.66337 4.74995 4.80363 4.83130 4.84951 4.87613 4.90957 4.98798 5.04430 5.05591 5.17939 5.18442 5.20030 5.24711 5.28035 5.30895 5.35513 5.43008 5.49461 5.50504 5.52580 5.66911 5.92646 6.29141 6.36678 6.92319 7.07956 7.60014 8.52928 9.26800 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.003449 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.334374 B = 8116.220635 C = 9120.621210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.090 4.090 5 C -0.104 4.104 6 C 0.521 3.479 7 O -0.579 6.579 8 N -0.611 5.611 9 C 0.081 3.919 10 C 0.046 3.954 11 O -0.366 6.366 12 C 0.075 3.925 13 C 0.179 3.821 14 N -0.632 5.632 15 C -0.235 4.235 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.948 5.948 19 Si 0.976 3.024 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.101 3.899 24 C 0.103 3.897 25 C -0.098 4.098 26 C -0.083 4.083 27 H 0.086 0.914 28 C -0.157 4.157 29 C -0.107 4.107 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.250 0.750 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.075 0.925 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -12.481 10.921 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.125 4.125 6 C 0.312 3.688 7 O -0.459 6.459 8 N -0.343 5.343 9 C -0.041 4.041 10 C -0.031 4.031 11 O -0.285 6.285 12 C 0.033 3.967 13 C 0.053 3.947 14 N -0.358 5.358 15 C -0.364 4.364 16 H 0.095 0.905 17 C -0.253 4.253 18 N -0.597 5.597 19 Si 0.804 3.196 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.220 1.220 23 C -0.024 4.024 24 C -0.020 4.020 25 C -0.136 4.136 26 C -0.102 4.102 27 H 0.104 0.896 28 C -0.214 4.214 29 C -0.144 4.144 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.131 0.869 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.093 0.907 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.420 -12.623 10.447 21.180 hybrid contribution 0.362 1.006 -0.875 1.381 sum -13.058 -11.617 9.572 19.927 Atomic orbital electron populations 1.21801 0.94592 1.01910 1.01965 1.21172 0.95957 0.99771 0.94052 0.90689 1.21383 0.92057 1.01197 0.98173 1.21443 0.97960 1.00840 0.92240 1.21181 0.80012 0.81773 0.85858 1.90634 1.56222 1.38191 1.60806 1.48308 1.15144 1.37469 1.33405 1.22276 0.99859 0.94551 0.87432 1.23074 0.93754 0.90781 0.95502 1.87998 1.36801 1.54202 1.49458 1.23321 0.95459 0.89794 0.88123 1.22144 0.96719 0.83700 0.92098 1.46049 1.14937 1.27440 1.47385 1.19337 0.99848 0.99569 1.17598 0.90462 1.25532 0.96653 1.02387 1.00775 1.69969 1.08501 1.41816 1.39374 0.85058 0.77696 0.79124 0.77711 1.19372 1.21505 1.21993 1.23201 0.91240 0.89151 0.98810 1.22374 0.95348 0.89397 0.94908 1.21500 1.00901 0.98934 0.92249 1.21066 0.95626 0.96401 0.97084 0.89606 1.22001 1.01277 0.95909 1.02204 1.21629 0.94666 1.00698 0.97423 0.92713 0.91577 0.93143 0.93149 0.92032 0.88053 0.88330 0.89220 0.94001 0.85802 0.92812 0.93470 0.94133 0.94425 0.92261 0.88711 0.86888 0.91849 0.90919 0.91841 0.92430 0.92707 0.90683 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.19 71.98 0.66 -1.44 16 2 C -0.09 -1.45 2.45 -10.79 -0.03 -1.48 16 3 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 4 C -0.09 -1.86 3.98 30.60 0.12 -1.74 16 5 C -0.10 -2.18 1.51 -11.54 -0.02 -2.19 16 6 C 0.52 14.11 6.84 87.66 0.60 14.71 16 7 O -0.58 -19.21 15.53 -3.03 -0.05 -19.25 16 8 N -0.61 -16.07 3.03 -817.59 -2.48 -18.55 16 9 C 0.08 2.06 6.61 86.32 0.57 2.63 16 10 C 0.05 1.33 6.88 72.06 0.50 1.82 16 11 O -0.37 -14.00 10.52 -148.98 -1.57 -15.57 16 12 C 0.07 2.72 1.21 -10.49 -0.01 2.71 16 13 C 0.18 8.17 6.90 86.29 0.60 8.77 16 14 N -0.63 -32.35 3.70 -729.23 -2.70 -35.05 16 15 C -0.24 -13.36 10.70 84.04 0.90 -12.46 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 18 N -0.95 -56.51 11.39 21.65 0.25 -56.26 16 19 Si 0.98 45.90 29.55 68.60 2.03 47.92 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 C 0.10 4.09 8.08 86.31 0.70 4.79 16 24 C 0.10 2.73 5.39 86.19 0.46 3.19 16 25 C -0.10 -1.68 4.71 30.60 0.14 -1.53 16 26 C -0.08 -1.16 3.19 -10.79 -0.03 -1.19 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 28 C -0.16 -2.30 8.50 71.98 0.61 -1.69 16 29 C -0.11 -1.44 4.73 30.59 0.14 -1.30 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.41 7.88 -2.39 -0.02 1.39 16 35 H 0.10 2.06 4.44 -2.39 -0.01 2.05 16 36 H 0.10 2.50 7.06 -2.38 -0.02 2.48 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.30 7.19 -2.38 -0.02 1.28 16 39 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.05 2.31 8.09 -2.39 -0.02 2.29 16 41 H 0.05 2.51 7.17 -2.39 -0.02 2.49 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.04 1.56 7.27 -2.39 -0.02 1.54 16 44 H 0.06 2.15 7.94 -2.39 -0.02 2.13 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.11 2.61 5.35 -2.38 -0.01 2.59 16 47 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.20 7.88 -2.39 -0.02 1.18 16 49 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.05 0.89 4.81 -2.39 -0.01 0.87 16 52 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -70.47 394.93 2.75 -67.72 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.88 Total: 18.41 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.38 Total: 10.63 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.93 Total: -109.87 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.61 Total: -34.82 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.47 2.75 -67.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053544021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.181 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds