Wall clock time and date at job start Tue Mar 31 2020 20:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46627 * 2 1 4 4 C 1.52994 * 109.47390 * 120.00727 * 2 1 3 5 5 C 1.53004 * 109.46884 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.46988 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00208 * 24.79945 * 6 5 4 8 8 N 1.34774 * 119.99759 * 204.80819 * 6 5 4 9 9 C 1.47125 * 121.05735 * 4.51254 * 8 6 5 10 10 C 1.52765 * 108.97633 * 232.17017 * 9 8 6 11 11 O 1.43108 * 109.42368 * 306.11856 * 10 9 8 12 12 C 1.42489 * 113.96923 * 59.82583 * 11 10 9 13 13 C 1.53472 * 113.76149 * 73.17537 * 12 11 10 14 14 N 1.47666 * 85.96875 * 91.28720 * 13 12 11 15 15 C 1.36944 * 134.45393 * 204.27264 * 14 13 12 16 16 H 1.08004 * 119.99589 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00300 * 0.02904 * 15 14 13 18 18 N 1.31621 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00257 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47247 * 89.99776 * 19 17 15 21 21 H 1.48501 * 109.47484 * 209.99780 * 19 17 15 22 22 H 1.48498 * 109.47191 * 330.00198 * 19 17 15 23 23 C 1.47670 * 91.09298 * 24.29100 * 14 13 12 24 24 C 1.47346 * 121.05494 * 184.79139 * 8 6 5 25 25 C 1.53003 * 109.47017 * 299.99473 * 5 4 2 26 26 C 1.53007 * 109.46785 * 60.00304 * 25 5 4 27 27 H 1.08999 * 109.46597 * 179.97438 * 26 25 5 28 28 C 1.53001 * 109.47006 * 59.99998 * 26 25 5 29 29 C 1.52997 * 109.46996 * 299.99913 * 26 25 5 30 30 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46776 * 299.99036 * 1 2 3 32 32 H 1.08999 * 109.47620 * 59.99723 * 1 2 3 33 33 H 1.09001 * 109.47354 * 299.99882 * 4 2 1 34 34 H 1.08999 * 109.47126 * 59.99759 * 4 2 1 35 35 H 1.08999 * 109.47475 * 59.99925 * 5 4 2 36 36 H 1.08994 * 109.59056 * 351.99948 * 9 8 6 37 37 H 1.09000 * 109.59478 * 112.45628 * 9 8 6 38 38 H 1.09003 * 109.57001 * 186.06535 * 10 9 8 39 39 H 1.09002 * 109.34190 * 66.03273 * 10 9 8 40 40 H 1.09000 * 113.79244 * 205.54728 * 13 12 11 41 41 H 1.08994 * 113.79137 * 337.02249 * 13 12 11 42 42 H 0.96993 * 120.00334 * 180.02562 * 18 17 15 43 43 H 1.08996 * 113.79743 * 221.44270 * 23 14 13 44 44 H 1.08999 * 113.79100 * 89.96631 * 23 14 13 45 45 H 1.09007 * 109.75189 * 251.24198 * 24 8 6 46 46 H 1.09006 * 109.74616 * 11.91684 * 24 8 6 47 47 H 1.08999 * 109.47367 * 300.00517 * 25 5 4 48 48 H 1.09003 * 109.46920 * 179.97438 * 25 5 4 49 49 H 1.09001 * 109.46886 * 299.99972 * 28 26 25 50 50 H 1.09006 * 109.47249 * 59.99704 * 28 26 25 51 51 H 1.08994 * 109.47108 * 179.97438 * 28 26 25 52 52 H 1.08998 * 109.46959 * 299.99468 * 29 26 25 53 53 H 1.09007 * 109.47012 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5701 -0.7207 1.2493 6 6 4.0725 -1.4318 2.4793 7 8 3.3760 -2.2588 3.0287 8 7 5.2958 -1.1486 2.9689 9 6 6.1202 -0.0812 2.3810 10 6 7.5012 -0.6448 2.0511 11 8 8.0580 -1.2547 3.2199 12 6 7.2762 -2.3252 3.7424 13 6 7.3375 -3.6052 2.8980 14 7 8.4702 -3.9959 3.7610 15 6 9.5448 -4.8318 3.6132 16 1 10.2534 -4.9482 4.4200 17 6 9.7234 -5.5295 2.4266 18 7 8.8596 -5.3880 1.4436 19 14 11.1895 -6.6692 2.2248 20 1 10.8226 -8.0336 2.6822 21 1 11.5865 -6.7168 0.7946 22 1 12.3251 -6.1636 3.0371 23 6 7.9798 -3.1243 4.8474 24 6 5.8526 -1.9023 4.1060 25 6 4.0805 -1.4416 -0.0001 26 6 3.5704 -0.7202 -1.2492 27 1 3.9344 -1.2334 -2.1392 28 6 4.0799 0.7225 -1.2488 29 6 2.0404 -0.7207 -1.2494 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6768 -0.2077 2.1392 34 1 1.6767 -1.7490 1.2490 35 1 3.9331 0.3070 1.2496 36 1 5.6486 0.2844 1.4689 37 1 6.2233 0.7361 3.0948 38 1 8.1539 0.1612 1.7156 39 1 7.4077 -1.3902 1.2614 40 1 6.4618 -4.2453 3.0054 41 1 7.6157 -3.4332 1.8583 42 1 8.9842 -5.8758 0.6145 43 1 8.7682 -2.5701 5.3566 44 1 7.2950 -3.6212 5.5346 45 1 5.8717 -1.2695 4.9934 46 1 5.2426 -2.7854 4.2966 47 1 3.7176 -2.4693 -0.0004 48 1 5.1706 -1.4407 -0.0001 49 1 3.7163 1.2360 -0.3587 50 1 5.1700 0.7229 -1.2486 51 1 3.7169 1.2363 -2.1388 52 1 1.6775 -1.7485 -1.2498 53 1 1.6770 -0.2072 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053544022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:17 Heat of formation + Delta-G solvation = -56.363750 kcal Electronic energy + Delta-G solvation = -31691.828760 eV Core-core repulsion = 27756.878438 eV Total energy + Delta-G solvation = -3934.950323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00791 -40.80686 -39.22043 -37.79050 -35.78012 -34.34761 -34.05028 -32.91507 -31.40164 -29.42722 -27.93930 -27.65678 -27.28188 -26.89404 -24.78565 -24.44982 -23.12338 -22.21544 -20.62809 -20.02997 -19.50710 -18.85051 -18.27202 -17.61848 -17.15686 -16.83799 -16.39156 -16.05372 -15.97545 -15.78385 -15.59515 -15.27082 -14.96675 -14.86457 -14.79834 -14.49540 -14.34606 -14.08025 -13.85573 -13.48395 -13.35063 -13.15131 -13.02745 -12.93375 -12.78344 -12.62942 -12.54489 -12.45102 -12.11298 -12.08973 -11.97874 -11.92384 -11.82795 -11.73564 -11.52423 -11.35988 -11.14708 -10.99040 -10.84552 -10.78652 -10.53339 -9.54956 -8.97406 -7.93204 -5.27904 1.42061 1.44959 1.53343 1.53771 1.87236 2.43647 2.63186 3.23580 3.31269 3.37855 3.60255 3.65465 3.71933 3.75812 3.92809 4.07518 4.08847 4.16037 4.16506 4.29265 4.34873 4.35419 4.43550 4.49732 4.56438 4.60301 4.61710 4.67398 4.78161 4.79232 4.80954 4.84315 4.86592 4.93339 4.98925 5.04508 5.05109 5.09474 5.17544 5.17927 5.20729 5.27350 5.30758 5.34234 5.40351 5.43428 5.48772 5.51374 5.67035 5.85912 6.30517 6.36042 6.86007 7.10257 7.55844 8.49000 9.23329 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.003207 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.492694 B = 8729.451789 C = 9287.365454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.092 0.908 4 C -0.093 4.093 5 C -0.094 4.094 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.613 5.613 9 C 0.076 3.924 10 C 0.040 3.960 11 O -0.361 6.361 12 C 0.080 3.920 13 C 0.153 3.847 14 N -0.634 5.634 15 C -0.234 4.234 16 H 0.087 0.913 17 C -0.069 4.069 18 N -0.955 5.955 19 Si 0.983 3.017 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.266 1.266 23 C 0.133 3.867 24 C 0.107 3.893 25 C -0.103 4.103 26 C -0.085 4.085 27 H 0.072 0.928 28 C -0.151 4.151 29 C -0.110 4.110 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.032 0.968 40 H 0.005 0.995 41 H 0.042 0.958 42 H 0.247 0.753 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.040 0.960 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.048 0.952 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 19.665 -4.767 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.110 0.890 4 C -0.131 4.131 5 C -0.114 4.114 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.345 5.345 9 C -0.046 4.046 10 C -0.037 4.037 11 O -0.279 6.279 12 C 0.038 3.962 13 C 0.027 3.973 14 N -0.360 5.360 15 C -0.362 4.362 16 H 0.105 0.895 17 C -0.262 4.262 18 N -0.604 5.604 19 Si 0.810 3.190 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.190 1.190 23 C 0.008 3.992 24 C -0.017 4.017 25 C -0.141 4.141 26 C -0.104 4.104 27 H 0.090 0.910 28 C -0.208 4.208 29 C -0.147 4.147 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.153 0.847 39 H 0.050 0.950 40 H 0.023 0.977 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.066 0.934 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.664 19.089 -4.538 23.910 hybrid contribution 0.605 -1.805 -0.217 1.916 sum -13.059 17.283 -4.755 22.178 Atomic orbital electron populations 1.21814 0.94621 1.01569 1.02363 1.21152 0.95875 1.00138 0.93144 0.88959 1.21424 0.91914 1.00856 0.98895 1.21403 0.98011 1.01257 0.90764 1.21444 0.80348 0.82205 0.85704 1.90653 1.57169 1.36591 1.62083 1.48318 1.16631 1.36262 1.33317 1.22607 0.90767 0.89577 1.01600 1.23094 0.95586 0.97790 0.87248 1.87887 1.48280 1.47408 1.44333 1.23149 0.90012 0.86784 0.96230 1.22487 0.88070 0.90752 0.95956 1.46182 1.24327 1.51589 1.13926 1.19449 0.99956 1.17280 0.99524 0.89547 1.25674 1.01912 1.02429 0.96137 1.70031 1.38593 1.46427 1.05379 0.85020 0.78851 0.78402 0.76708 1.21387 1.21916 1.19013 1.22718 0.96119 0.89085 0.91262 1.21992 0.92342 0.97565 0.89784 1.21506 1.00314 0.98549 0.93722 1.21065 0.95832 0.97395 0.96059 0.90972 1.21973 1.01286 0.94567 1.02985 1.21651 0.94459 1.00339 0.98253 0.93708 0.92401 0.91274 0.91851 0.93535 0.85799 0.85838 0.87824 0.84688 0.94966 0.97715 0.94004 0.94397 0.91396 0.91368 0.88473 0.90356 0.94083 0.92024 0.91210 0.92298 0.91371 0.93355 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.08 -1.21 2.45 -10.80 -0.03 -1.24 16 3 H 0.09 1.01 6.43 -2.39 -0.02 0.99 16 4 C -0.09 -1.91 4.01 30.59 0.12 -1.79 16 5 C -0.09 -1.99 1.42 -11.54 -0.02 -2.01 16 6 C 0.51 15.64 6.82 87.66 0.60 16.24 16 7 O -0.59 -23.02 15.61 -3.04 -0.05 -23.07 16 8 N -0.61 -17.58 3.03 -818.71 -2.48 -20.07 16 9 C 0.08 1.57 6.39 86.18 0.55 2.12 16 10 C 0.04 1.10 6.87 71.90 0.49 1.59 16 11 O -0.36 -13.51 10.52 -148.98 -1.57 -15.08 16 12 C 0.08 3.17 1.21 -10.49 -0.01 3.16 16 13 C 0.15 7.89 6.65 86.31 0.57 8.46 16 14 N -0.63 -34.53 3.70 -729.28 -2.70 -37.23 16 15 C -0.23 -13.75 10.70 84.03 0.90 -12.85 16 16 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 18 N -0.96 -60.08 11.39 21.65 0.25 -59.84 16 19 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.13 5.63 8.33 86.30 0.72 6.35 16 24 C 0.11 3.54 5.76 86.18 0.50 4.04 16 25 C -0.10 -2.31 4.60 30.60 0.14 -2.17 16 26 C -0.09 -1.36 3.19 -10.79 -0.03 -1.40 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 C -0.15 -1.69 8.50 71.98 0.61 -1.08 16 29 C -0.11 -1.63 4.73 30.59 0.14 -1.49 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.23 7.87 -2.39 -0.02 1.21 16 35 H 0.12 1.83 4.63 -2.39 -0.01 1.82 16 36 H 0.12 1.77 5.26 -2.39 -0.01 1.76 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.03 1.08 7.19 -2.39 -0.02 1.06 16 40 H 0.01 0.29 7.94 -2.39 -0.02 0.27 16 41 H 0.04 2.41 6.30 -2.39 -0.02 2.39 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 45 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 46 H 0.08 2.96 6.95 -2.38 -0.02 2.94 16 47 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.06 1.48 7.90 -2.39 -0.02 1.46 16 49 H 0.07 0.64 4.81 -2.39 -0.01 0.63 16 50 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -78.53 394.98 2.75 -75.79 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.88 Total: 17.12 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.39 Total: 13.03 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -4.94 Total: -117.13 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.61 Total: -38.15 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -78.53 2.75 -75.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053544022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.423 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds