Wall clock time and date at job start Tue Mar 31 2020 19:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47379 * 2 1 4 4 C 1.53001 * 109.46736 * 240.00285 * 2 1 3 5 5 C 1.53006 * 109.47103 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46839 * 59.99722 * 5 4 2 7 7 C 1.52992 * 109.47449 * 300.00221 * 6 5 4 8 8 C 1.52998 * 109.47266 * 60.00315 * 7 6 5 9 9 H 1.08991 * 109.47153 * 59.99818 * 8 7 6 10 10 C 1.53004 * 109.47347 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.46986 * 294.99862 * 10 8 7 12 12 O 1.21283 * 119.99717 * 0.02562 * 11 10 8 13 13 N 1.34770 * 120.00374 * 180.02562 * 11 10 8 14 14 C 1.47134 * 121.05806 * 359.97438 * 13 11 10 15 15 C 1.53228 * 108.73317 * 232.26936 * 14 13 11 16 16 O 1.43125 * 109.34875 * 305.80377 * 15 14 13 17 17 C 1.42366 * 113.99162 * 59.78082 * 16 15 14 18 18 C 1.52922 * 114.29550 * 74.94366 * 17 16 15 19 19 N 1.47172 * 87.84383 * 88.28079 * 18 17 16 20 20 C 1.36932 * 136.00032 * 206.65057 * 19 18 17 21 21 H 1.08007 * 120.00381 * 8.60341 * 20 19 18 22 22 C 1.38814 * 120.00407 * 188.60767 * 20 19 18 23 23 N 1.31622 * 119.99837 * 18.56687 * 22 20 19 24 24 Si 1.86795 * 120.00321 * 198.57293 * 22 20 19 25 25 H 1.48502 * 109.47077 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47087 * 239.99435 * 24 22 20 27 27 H 1.48498 * 109.47401 * 119.99634 * 24 22 20 28 28 C 1.47180 * 88.00093 * 26.89671 * 19 18 17 29 29 C 1.47352 * 121.06655 * 179.97438 * 13 11 10 30 30 H 1.08999 * 109.46632 * 299.99889 * 1 2 3 31 31 H 1.08995 * 109.46722 * 59.99618 * 1 2 3 32 32 H 1.08995 * 109.46678 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47426 * 299.99652 * 4 2 1 34 34 H 1.08994 * 109.47713 * 59.99803 * 4 2 1 35 35 H 1.08999 * 109.47000 * 179.97438 * 5 4 2 36 36 H 1.08991 * 109.46929 * 300.00099 * 5 4 2 37 37 H 1.09008 * 109.47206 * 60.00690 * 6 5 4 38 38 H 1.09000 * 109.46706 * 179.97438 * 6 5 4 39 39 H 1.09005 * 109.47202 * 299.99894 * 7 6 5 40 40 H 1.09002 * 109.47361 * 180.02562 * 7 6 5 41 41 H 1.08992 * 109.47199 * 174.99526 * 10 8 7 42 42 H 1.09010 * 109.47092 * 54.99560 * 10 8 7 43 43 H 1.08994 * 109.59373 * 112.49524 * 14 13 11 44 44 H 1.08996 * 109.59474 * 352.04152 * 14 13 11 45 45 H 1.09004 * 109.49158 * 185.84711 * 15 14 13 46 46 H 1.08993 * 109.51733 * 65.78423 * 15 14 13 47 47 H 1.08996 * 113.49388 * 333.53641 * 18 17 16 48 48 H 1.08999 * 113.54965 * 203.02391 * 18 17 16 49 49 H 0.97005 * 119.99734 * 5.70135 * 23 22 20 50 50 H 1.08998 * 113.48469 * 87.84672 * 28 19 18 51 51 H 1.08996 * 113.48913 * 218.35131 * 28 19 18 52 52 H 1.09000 * 109.74617 * 12.14375 * 29 13 11 53 53 H 1.08995 * 109.75259 * 251.41509 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 6 4.0795 -1.4435 0.0002 7 6 3.5696 -0.7223 1.2494 8 6 2.0396 -0.7218 1.2492 9 1 1.6759 -1.7492 1.2489 10 6 1.5296 0.0000 2.4982 11 6 1.9278 -0.7782 3.7258 12 8 2.5579 -1.8083 3.6128 13 7 1.5838 -0.3294 4.9491 14 6 0.8202 0.9175 5.1132 15 6 1.5586 1.8195 6.1077 16 8 1.7890 1.0976 7.3220 17 6 2.5696 -0.0812 7.1554 18 6 4.0610 0.1773 6.9377 19 7 4.2219 0.1532 8.4004 20 6 5.0921 0.7009 9.3048 21 1 5.8161 1.4344 8.9818 22 6 5.0439 0.3133 10.6369 23 7 4.4445 -0.8088 10.9745 24 14 5.8293 1.3844 11.9503 25 1 6.4341 2.5829 11.3153 26 1 6.8846 0.6116 12.6535 27 1 4.7942 1.8101 12.9263 28 6 3.0410 -0.7229 8.4642 29 6 1.9604 -1.0718 6.1650 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.6767 -1.7490 -1.2494 34 1 1.6767 -0.2074 -2.1393 35 1 3.9333 -1.2360 -2.1389 36 1 3.9337 0.3056 -1.2488 37 1 3.7158 -2.4711 -0.0001 38 1 5.1695 -1.4443 0.0001 39 1 3.9333 0.3052 1.2497 40 1 3.9329 -1.2362 2.1394 41 1 0.4434 0.0786 2.4543 42 1 1.9647 0.9985 2.5440 43 1 -0.1746 0.6892 5.4957 44 1 0.7371 1.4245 4.1520 45 1 0.9531 2.7011 6.3181 46 1 2.5131 2.1273 5.6809 47 1 4.2732 1.1497 6.4932 48 1 4.5751 -0.6392 6.4307 49 1 4.1094 -1.4055 10.2870 50 1 3.2801 -1.7819 8.3674 51 1 2.3895 -0.5127 9.3124 52 1 2.6922 -1.8401 5.9155 53 1 1.0757 -1.5335 6.6035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053547155.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:56 Heat of formation + Delta-G solvation = -58.806965 kcal Electronic energy + Delta-G solvation = -30946.475944 eV Core-core repulsion = 27011.419676 eV Total energy + Delta-G solvation = -3935.056268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.98549 -40.80046 -39.32300 -38.02383 -35.82019 -34.58025 -34.03701 -32.94438 -31.54879 -29.66451 -28.88118 -27.51594 -26.89265 -26.43263 -24.75349 -23.78503 -22.88231 -21.87972 -20.77494 -20.58551 -19.95720 -19.55679 -18.25091 -17.67126 -16.97035 -16.75508 -16.34688 -16.24496 -15.91838 -15.64338 -15.59754 -15.35275 -15.30346 -15.12753 -14.97859 -14.85924 -14.53350 -14.14718 -13.79055 -13.43767 -13.29591 -13.19367 -12.93482 -12.78736 -12.65512 -12.60714 -12.47972 -12.45301 -12.30607 -12.07697 -11.89107 -11.84754 -11.72170 -11.68040 -11.48135 -11.28413 -11.06336 -10.98369 -10.80759 -10.74722 -10.52072 -9.59064 -9.17518 -8.44603 -5.41253 1.53706 1.60480 1.65360 1.79195 1.83248 2.50789 2.55558 3.09416 3.21216 3.32333 3.47337 3.67613 3.71311 3.80211 3.88739 4.00414 4.09325 4.16294 4.22085 4.27576 4.29666 4.39844 4.42122 4.48415 4.49041 4.54317 4.56487 4.59335 4.62223 4.67707 4.70805 4.75144 4.80497 4.82845 4.88116 4.91223 4.92831 5.01532 5.09769 5.20135 5.22819 5.24328 5.25668 5.32442 5.34419 5.41155 5.52204 5.56500 5.67942 6.04978 6.23620 6.36658 6.62845 7.14462 7.53467 8.33302 8.99202 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.002576 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.050215 B =10865.843088 C =11413.357886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.121 4.121 8 C -0.060 4.060 9 H 0.056 0.944 10 C -0.131 4.131 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.616 5.616 14 C 0.076 3.924 15 C 0.035 3.965 16 O -0.364 6.364 17 C 0.092 3.908 18 C 0.103 3.897 19 N -0.639 5.639 20 C -0.324 4.324 21 H 0.071 0.929 22 C -0.088 4.088 23 N -0.962 5.962 24 Si 1.133 2.867 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.285 1.285 28 C 0.146 3.854 29 C 0.112 3.888 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.036 0.964 49 H 0.253 0.747 50 H 0.047 0.953 51 H 0.034 0.966 52 H 0.084 0.916 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.032 5.759 -26.699 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.079 4.079 9 H 0.074 0.926 10 C -0.170 4.170 11 C 0.300 3.700 12 O -0.457 6.457 13 N -0.349 5.349 14 C -0.045 4.045 15 C -0.041 4.041 16 O -0.283 6.283 17 C 0.050 3.950 18 C -0.022 4.022 19 N -0.366 5.366 20 C -0.452 4.452 21 H 0.088 0.912 22 C -0.281 4.281 23 N -0.607 5.607 24 Si 0.956 3.044 25 H -0.195 1.195 26 H -0.214 1.214 27 H -0.211 1.211 28 C 0.020 3.980 29 C -0.012 4.012 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.052 0.948 52 H 0.103 0.897 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.356 5.605 -24.816 27.860 hybrid contribution 0.471 -0.967 -1.282 1.673 sum -10.885 4.638 -26.097 28.654 Atomic orbital electron populations 1.21924 0.94246 1.01867 1.02731 1.21140 0.96140 0.99601 0.93094 0.90122 1.21585 0.95019 1.00544 0.97855 1.21531 0.96173 1.00727 0.96959 1.21489 0.99860 0.99096 0.95113 1.21662 0.95845 1.00342 0.97975 1.20879 0.94875 0.99003 0.93097 0.92562 1.21946 1.04753 1.00256 0.90020 1.21522 0.77983 0.85482 0.84981 1.90666 1.41569 1.26893 1.86542 1.48365 1.55861 1.25523 1.05189 1.22674 0.95404 0.83882 1.02570 1.23316 1.00393 0.95441 0.84999 1.87939 1.70654 1.37139 1.32537 1.22561 0.89800 0.87119 0.95555 1.22933 0.94461 0.98776 0.86068 1.46048 1.31633 1.56706 1.02247 1.20120 1.14798 1.19163 0.91080 0.91153 1.27398 1.01601 0.99624 0.99514 1.70825 1.43087 1.10472 1.36285 0.82616 0.75137 0.73655 0.72951 1.19509 1.21404 1.21138 1.22201 0.87786 0.93596 0.94444 1.21757 1.00963 0.93989 0.84499 0.91256 0.91699 0.93340 0.92749 0.90641 0.91679 0.91547 0.93244 0.92695 0.92053 0.93459 0.85741 0.86782 0.88730 0.84692 0.84687 0.93439 0.93561 0.94596 0.93620 0.93505 0.94773 0.89731 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.85 71.98 0.64 -0.68 16 2 C -0.08 -0.93 2.25 -10.79 -0.02 -0.95 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.11 -1.35 5.20 30.60 0.16 -1.19 16 5 C -0.12 -1.60 5.92 30.60 0.18 -1.42 16 6 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 7 C -0.12 -2.52 4.94 30.59 0.15 -2.37 16 8 C -0.06 -1.01 1.36 -10.79 -0.01 -1.02 16 9 H 0.06 1.21 7.96 -2.39 -0.02 1.19 16 10 C -0.13 -1.94 3.33 29.85 0.10 -1.84 16 11 C 0.51 12.69 7.43 87.66 0.65 13.34 16 12 O -0.58 -19.50 13.46 -3.04 -0.04 -19.54 16 13 N -0.62 -15.17 3.03 -818.08 -2.48 -17.65 16 14 C 0.08 1.27 6.50 86.33 0.56 1.83 16 15 C 0.03 0.81 6.90 72.06 0.50 1.31 16 16 O -0.36 -13.36 10.55 -148.98 -1.57 -14.93 16 17 C 0.09 3.57 1.29 -10.83 -0.01 3.56 16 18 C 0.10 4.63 7.90 83.32 0.66 5.29 16 19 N -0.64 -35.39 3.69 -738.70 -2.72 -38.11 16 20 C -0.32 -19.64 10.65 84.03 0.89 -18.74 16 21 H 0.07 4.17 7.90 -2.91 -0.02 4.15 16 22 C -0.09 -5.35 5.45 84.86 0.46 -4.89 16 23 N -0.96 -62.30 13.34 21.65 0.29 -62.01 16 24 Si 1.13 53.53 29.96 68.60 2.06 55.58 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 28 C 0.15 7.21 5.59 83.41 0.47 7.68 16 29 C 0.11 3.58 5.83 86.13 0.50 4.08 16 30 H 0.07 0.44 6.32 -2.39 -0.02 0.43 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.05 1.34 5.95 -2.39 -0.01 1.33 16 41 H 0.12 1.16 6.02 -2.39 -0.01 1.14 16 42 H 0.11 1.25 7.69 -2.38 -0.02 1.23 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.14 1.10 6.03 -2.39 -0.01 1.08 16 45 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 46 H 0.05 1.17 7.30 -2.39 -0.02 1.16 16 47 H 0.05 2.01 7.36 -2.39 -0.02 1.99 16 48 H 0.04 1.64 7.93 -2.39 -0.02 1.62 16 49 H 0.25 16.46 5.92 -92.70 -0.55 15.91 16 50 H 0.05 2.30 7.92 -2.39 -0.02 2.29 16 51 H 0.03 1.85 7.98 -2.39 -0.02 1.83 16 52 H 0.08 3.02 6.89 -2.39 -0.02 3.00 16 53 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -80.88 395.67 2.67 -78.21 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.09 Total: 16.49 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.05 Total: 1.96 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.91 Total: -117.77 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.61 Total: -34.47 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.06 Total: 55.58 kcal Total: -80.88 2.67 -78.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547155.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.400 kcal (2) G-P(sol) polarization free energy of solvation -80.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds