Wall clock time and date at job start Tue Mar 31 2020 19:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47488 * 2 1 4 4 C 1.53000 * 109.47183 * 119.99913 * 2 1 3 5 5 C 1.52995 * 109.46994 * 59.99973 * 4 2 1 6 6 C 1.53001 * 109.47579 * 59.99845 * 5 4 2 7 7 C 1.53000 * 109.47084 * 300.00100 * 6 5 4 8 8 C 1.53001 * 109.46880 * 59.99816 * 7 6 5 9 9 H 1.09006 * 109.47257 * 59.99867 * 8 7 6 10 10 C 1.53000 * 109.46880 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47271 * 294.99773 * 10 8 7 12 12 O 1.21283 * 119.99835 * 0.02562 * 11 10 8 13 13 N 1.34772 * 120.00287 * 180.02562 * 11 10 8 14 14 C 1.47140 * 121.06012 * 359.97438 * 13 11 10 15 15 C 1.53227 * 108.72331 * 127.72666 * 14 13 11 16 16 O 1.43112 * 109.35517 * 54.20135 * 15 14 13 17 17 C 1.42361 * 113.99200 * 300.21648 * 16 15 14 18 18 C 1.52921 * 114.29761 * 285.05429 * 17 16 15 19 19 N 1.47161 * 87.84630 * 271.71935 * 18 17 16 20 20 C 1.36942 * 136.00225 * 153.32049 * 19 18 17 21 21 H 1.07997 * 119.99880 * 4.16194 * 20 19 18 22 22 C 1.38813 * 119.99772 * 184.15254 * 20 19 18 23 23 N 1.31615 * 120.00152 * 6.14715 * 22 20 19 24 24 Si 1.86805 * 119.99592 * 186.14233 * 22 20 19 25 25 H 1.48495 * 109.47189 * 265.03233 * 24 22 20 26 26 H 1.48494 * 109.46805 * 145.02898 * 24 22 20 27 27 H 1.48505 * 109.47042 * 25.03149 * 24 22 20 28 28 C 1.47181 * 87.99766 * 333.58177 * 19 18 17 29 29 C 1.47362 * 121.06443 * 180.02562 * 13 11 10 30 30 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46738 * 300.00663 * 1 2 3 32 32 H 1.08999 * 109.47137 * 59.99910 * 1 2 3 33 33 H 1.09006 * 109.47284 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47219 * 299.99510 * 4 2 1 35 35 H 1.09008 * 109.46990 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47466 * 299.99495 * 5 4 2 37 37 H 1.09006 * 109.46814 * 60.00087 * 6 5 4 38 38 H 1.08992 * 109.47227 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.46964 * 300.00132 * 7 6 5 40 40 H 1.08998 * 109.47144 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.47281 * 175.00013 * 10 8 7 42 42 H 1.08997 * 109.47273 * 55.00185 * 10 8 7 43 43 H 1.08998 * 109.59442 * 247.50056 * 14 13 11 44 44 H 1.09000 * 109.59364 * 7.95642 * 14 13 11 45 45 H 1.09001 * 109.48518 * 174.16033 * 15 14 13 46 46 H 1.08999 * 109.49511 * 294.23418 * 15 14 13 47 47 H 1.08994 * 113.49431 * 156.97330 * 18 17 16 48 48 H 1.09002 * 113.54407 * 26.46644 * 18 17 16 49 49 H 0.97000 * 119.99705 * 179.97438 * 23 22 20 50 50 H 1.09005 * 113.49130 * 141.17458 * 28 19 18 51 51 H 1.09001 * 113.48809 * 271.67670 * 28 19 18 52 52 H 1.09005 * 109.74780 * 108.59126 * 29 13 11 53 53 H 1.09003 * 109.78716 * 347.88708 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7214 -1.2492 10 6 1.5305 -0.0003 -2.4988 11 6 2.1318 -0.6357 -3.7258 12 8 2.8926 -1.5734 -3.6120 13 7 1.8242 -0.1622 -4.9495 14 6 0.9037 0.9737 -5.1146 15 6 1.5803 2.0317 -5.9925 16 8 2.0079 1.4284 -7.2178 17 6 2.9351 0.3619 -7.0453 18 6 4.3515 0.8117 -6.6849 19 7 4.6294 0.9040 -8.1271 20 6 5.4797 1.6250 -8.9224 21 1 6.2082 2.2848 -8.4750 22 6 5.4054 1.5074 -10.3035 23 7 4.4419 0.7988 -10.8528 24 14 6.6731 2.3551 -11.3825 25 1 6.1481 3.6732 -11.8207 26 1 6.9522 1.5127 -12.5731 27 1 7.9266 2.5531 -10.6113 28 6 3.5877 -0.1137 -8.3405 29 6 2.3983 -0.7661 -6.1649 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -0.2074 2.1392 35 1 1.8930 -2.6774 2.1395 36 1 0.4400 -2.1637 1.2493 37 1 3.1299 -2.8851 0.0000 38 1 1.6769 -3.9127 0.0003 39 1 0.4399 -2.1637 -1.2491 40 1 1.8935 -2.6774 -2.1392 41 1 1.8188 1.0500 -2.4553 42 1 0.4442 -0.0771 -2.5451 43 1 -0.0143 0.6336 -5.5939 44 1 0.6724 1.4016 -4.1391 45 1 0.8723 2.8317 -6.2087 46 1 2.4436 2.4414 -5.4682 47 1 4.9357 0.0436 -6.1783 48 1 4.3861 1.7737 -6.1735 49 1 4.3898 0.7170 -11.8179 50 1 2.9774 0.0681 -9.2252 51 1 3.9621 -1.1360 -8.2885 52 1 1.6264 -1.3173 -6.7021 53 1 3.2108 -1.4401 -5.8937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053547156.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:00 Heat of formation + Delta-G solvation = -51.501327 kcal Electronic energy + Delta-G solvation = -30892.475390 eV Core-core repulsion = 26957.735918 eV Total energy + Delta-G solvation = -3934.739472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.87777 -40.79616 -39.42644 -37.82908 -35.72278 -34.35899 -33.75974 -32.53717 -31.55731 -29.63194 -29.01244 -27.71310 -26.73435 -26.49781 -24.61970 -23.74956 -23.15420 -22.39136 -20.65870 -19.91753 -19.27700 -18.83736 -18.17833 -17.54119 -17.07476 -16.75387 -16.61046 -16.48769 -16.02563 -15.74645 -15.39875 -15.21518 -15.09976 -15.05849 -14.68444 -14.51788 -14.14154 -13.98148 -13.72811 -13.47827 -13.38698 -13.23978 -12.97671 -12.85824 -12.76903 -12.63935 -12.51550 -12.36377 -12.14553 -12.11065 -11.95534 -11.87626 -11.70916 -11.58921 -11.41398 -11.09429 -11.00581 -10.97908 -10.75839 -10.72742 -10.44146 -9.52107 -8.96124 -7.92519 -5.28450 1.43221 1.46123 1.55247 1.66481 1.90391 2.43666 2.69195 3.25931 3.32902 3.45713 3.56485 3.73381 3.82769 3.84164 3.95589 4.06908 4.16728 4.26175 4.30219 4.34863 4.38968 4.45517 4.52858 4.54271 4.55412 4.61574 4.65684 4.67332 4.71171 4.73660 4.81758 4.84128 4.89283 4.95500 4.96475 5.08618 5.10126 5.15070 5.20247 5.24865 5.25418 5.32083 5.34795 5.38824 5.43020 5.47617 5.54428 5.64339 5.75365 5.87799 6.38731 6.44578 6.85111 7.20166 7.54698 8.53317 9.23666 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002424 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.778788 B =11546.959386 C =11807.205577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.062 4.062 9 H 0.049 0.951 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.615 5.615 14 C 0.078 3.922 15 C 0.034 3.966 16 O -0.365 6.365 17 C 0.082 3.918 18 C 0.104 3.896 19 N -0.631 5.631 20 C -0.234 4.234 21 H 0.082 0.918 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.984 3.016 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.269 1.269 28 C 0.159 3.841 29 C 0.113 3.887 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.043 0.957 49 H 0.250 0.750 50 H 0.054 0.946 51 H 0.039 0.961 52 H 0.083 0.917 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.884 -0.790 25.542 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.081 4.081 9 H 0.068 0.932 10 C -0.168 4.168 11 C 0.300 3.700 12 O -0.457 6.457 13 N -0.349 5.349 14 C -0.044 4.044 15 C -0.042 4.042 16 O -0.284 6.284 17 C 0.040 3.960 18 C -0.022 4.022 19 N -0.357 5.357 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.258 4.258 23 N -0.596 5.596 24 Si 0.811 3.189 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.194 1.194 28 C 0.033 3.967 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.152 0.848 45 H 0.148 0.852 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.057 0.943 52 H 0.101 0.899 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.391 -1.087 25.138 28.503 hybrid contribution 1.272 0.003 -1.056 1.653 sum -12.120 -1.084 24.081 26.981 Atomic orbital electron populations 1.21997 0.94116 1.02304 1.02471 1.21106 0.96865 0.98954 0.93149 0.90495 1.21560 1.00081 0.95725 0.97854 1.21558 1.01306 0.95604 0.96959 1.21489 0.99934 0.98959 0.95175 1.21663 1.00564 0.95415 0.97863 1.20864 0.99370 0.94865 0.93037 0.93199 1.21903 1.03229 1.01557 0.90120 1.21490 0.80568 0.82993 0.84918 1.90659 1.37974 1.30519 1.86519 1.48375 1.46978 1.34173 1.05354 1.22643 0.92399 0.86092 1.03279 1.23272 0.99412 0.96009 0.85531 1.87984 1.60535 1.49087 1.30745 1.22685 0.88110 0.88217 0.97018 1.22957 0.93870 0.98460 0.86898 1.45638 1.43815 1.44213 1.02006 1.19257 1.10313 1.18575 0.88053 0.90063 1.25685 1.00889 1.01695 0.97533 1.70025 1.33992 1.45807 1.09780 0.85001 0.78500 0.77413 0.78004 1.20994 1.21671 1.19393 1.21998 0.88409 0.91370 0.94936 1.21787 0.99512 0.94665 0.85166 0.92274 0.92052 0.91511 0.93093 0.90798 0.91988 0.90898 0.93697 0.92298 0.91137 0.93239 0.86779 0.86050 0.88998 0.84820 0.85195 0.93463 0.93914 0.93921 0.94075 0.92774 0.94333 0.89925 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.15 71.98 0.59 -0.75 16 2 C -0.08 -0.98 2.72 -10.79 -0.03 -1.01 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.43 5.45 30.59 0.17 -1.26 16 5 C -0.12 -1.52 5.65 30.59 0.17 -1.35 16 6 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 7 C -0.12 -2.23 4.67 30.59 0.14 -2.09 16 8 C -0.06 -1.07 1.61 -10.79 -0.02 -1.09 16 9 H 0.05 1.14 7.95 -2.38 -0.02 1.12 16 10 C -0.13 -1.96 3.04 29.85 0.09 -1.87 16 11 C 0.51 12.85 7.43 87.66 0.65 13.50 16 12 O -0.58 -19.48 13.46 -3.04 -0.04 -19.53 16 13 N -0.62 -15.58 3.03 -817.88 -2.48 -18.06 16 14 C 0.08 1.39 6.50 86.33 0.56 1.95 16 15 C 0.03 0.85 6.90 72.06 0.50 1.35 16 16 O -0.37 -14.10 10.53 -148.98 -1.57 -15.67 16 17 C 0.08 3.26 1.27 -11.00 -0.01 3.25 16 18 C 0.10 4.63 7.91 83.31 0.66 5.29 16 19 N -0.63 -34.76 3.78 -740.02 -2.80 -37.56 16 20 C -0.23 -13.89 10.73 84.03 0.90 -12.99 16 21 H 0.08 4.63 7.84 -2.91 -0.02 4.60 16 22 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 23 N -0.95 -59.12 11.44 21.65 0.25 -58.87 16 24 Si 0.98 47.10 29.56 68.60 2.03 49.12 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.16 8.02 6.97 83.21 0.58 8.60 16 29 C 0.11 3.67 5.84 86.16 0.50 4.18 16 30 H 0.06 0.57 4.81 -2.39 -0.01 0.56 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.45 6.55 -2.39 -0.02 0.43 16 33 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 0.82 6.43 -2.39 -0.02 0.81 16 37 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.12 6.43 -2.39 -0.02 1.11 16 40 H 0.05 1.28 5.95 -2.39 -0.01 1.27 16 41 H 0.11 1.28 7.69 -2.39 -0.02 1.26 16 42 H 0.12 1.22 6.56 -2.39 -0.02 1.20 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.13 1.23 6.03 -2.39 -0.01 1.21 16 45 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.05 1.22 7.30 -2.39 -0.02 1.21 16 47 H 0.04 1.89 7.93 -2.39 -0.02 1.87 16 48 H 0.04 1.84 7.36 -2.39 -0.02 1.82 16 49 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.05 3.10 6.89 -2.38 -0.02 3.08 16 51 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 52 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 53 H 0.09 3.08 6.90 -2.39 -0.02 3.06 16 Total: -1.00 -77.26 389.83 2.38 -74.88 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.89 Total: 15.20 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.10 Total: 10.48 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -5.03 Total: -114.49 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.61 Total: -35.19 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.26 2.38 -74.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547156.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.379 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds