Wall clock time and date at job start Tue Mar 31 2020 19:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47392 * 240.00135 * 2 1 3 5 5 C 1.52997 * 109.46978 * 299.99957 * 4 2 1 6 6 C 1.53006 * 109.47164 * 299.99874 * 5 4 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.47473 * 120.00038 * 2 1 3 9 9 H 1.09001 * 109.47372 * 180.02562 * 8 2 1 10 10 C 1.53001 * 109.47302 * 300.00054 * 8 2 1 11 11 C 1.50695 * 109.47492 * 184.99611 * 10 8 2 12 12 O 1.21276 * 120.00204 * 0.02562 * 11 10 8 13 13 N 1.34783 * 120.00194 * 179.97438 * 11 10 8 14 14 C 1.47130 * 121.05096 * 0.02562 * 13 11 10 15 15 C 1.53222 * 108.72572 * 127.77075 * 14 13 11 16 16 O 1.43104 * 109.34822 * 54.12244 * 15 14 13 17 17 C 1.42482 * 113.97885 * 300.04621 * 16 15 14 18 18 C 1.53466 * 113.76607 * 286.79071 * 17 16 15 19 19 N 1.47663 * 85.97118 * 268.71583 * 18 17 16 20 20 C 1.36945 * 134.45436 * 155.67617 * 19 18 17 21 21 H 1.07995 * 119.99825 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00097 * 0.04505 * 20 19 18 23 23 N 1.31630 * 119.99823 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00159 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46778 * 90.00448 * 24 22 20 26 26 H 1.48497 * 109.47187 * 210.00233 * 24 22 20 27 27 H 1.48497 * 109.46934 * 330.00242 * 24 22 20 28 28 C 1.47671 * 91.09040 * 335.70809 * 19 18 17 29 29 C 1.47335 * 121.05735 * 179.72202 * 13 11 10 30 30 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 31 31 H 1.09002 * 109.47722 * 60.00050 * 1 2 3 32 32 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47097 * 59.99758 * 4 2 1 34 34 H 1.09001 * 109.47142 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47375 * 59.99908 * 5 4 2 36 36 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.46505 * 299.99708 * 6 5 4 38 38 H 1.08996 * 109.46884 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 1.08998 * 109.46991 * 305.00154 * 10 8 2 42 42 H 1.09008 * 109.46864 * 64.99913 * 10 8 2 43 43 H 1.09005 * 109.59260 * 247.53808 * 14 13 11 44 44 H 1.08997 * 109.59600 * 7.99149 * 14 13 11 45 45 H 1.09001 * 109.49276 * 174.08736 * 15 14 13 46 46 H 1.08997 * 109.49286 * 294.13086 * 15 14 13 47 47 H 1.08991 * 113.79371 * 22.98283 * 18 17 16 48 48 H 1.09002 * 113.78788 * 154.45280 * 18 17 16 49 49 H 0.97001 * 119.99672 * 179.97438 * 23 22 20 50 50 H 1.09000 * 113.79456 * 270.02581 * 28 19 18 51 51 H 1.09003 * 113.78955 * 138.55691 * 28 19 18 52 52 H 1.09007 * 109.74384 * 348.03970 * 29 13 11 53 53 H 1.08995 * 109.74477 * 108.75810 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7208 1.2494 10 6 1.5301 0.0000 2.4985 11 6 2.1309 -0.6353 3.7258 12 8 2.8924 -1.5724 3.6125 13 7 1.8228 -0.1615 4.9494 14 6 0.9022 0.9743 5.1137 15 6 -0.1937 0.5792 6.1090 16 8 0.4106 0.1200 7.3221 17 6 1.2581 -1.0130 7.1541 18 6 0.4980 -2.3211 6.8968 19 7 0.5253 -2.5034 8.3618 20 6 -0.2479 -3.1936 9.2570 21 1 -0.0107 -3.1647 10.3102 22 6 -1.3361 -3.9307 8.8106 23 7 -1.6245 -3.9667 7.5268 24 14 -2.3911 -4.8717 10.0316 25 1 -3.4938 -3.9988 10.5086 26 1 -2.9613 -6.0729 9.3706 27 1 -1.5569 -5.2912 11.1863 28 6 1.7198 -1.6426 8.4751 29 6 2.3920 -0.7688 6.1651 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 0.4400 -2.1638 -1.2493 36 1 1.8930 -2.6774 -2.1395 37 1 3.1300 -2.8850 -0.0001 38 1 1.6771 -3.9127 -0.0003 39 1 1.8938 -2.6773 2.1392 40 1 0.4401 -2.1638 1.2492 41 1 1.8184 1.0502 2.4548 42 1 0.4437 -0.0770 2.5444 43 1 1.4495 1.8361 5.4958 44 1 0.4515 1.2215 4.1526 45 1 -0.8221 1.4444 6.3204 46 1 -0.8032 -0.2170 5.6817 47 1 -0.5027 -2.1755 6.4903 48 1 1.0768 -3.0657 6.3501 49 1 -2.3848 -4.4821 7.2148 50 1 2.6619 -2.1853 8.3980 51 1 1.6896 -0.9579 9.3227 52 1 2.8708 -1.7155 5.9144 53 1 3.1227 -0.0918 6.6075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053547157.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:05 Heat of formation + Delta-G solvation = -56.039123 kcal Electronic energy + Delta-G solvation = -31292.075368 eV Core-core repulsion = 27357.139123 eV Total energy + Delta-G solvation = -3934.936246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.83495 -40.74795 -39.40191 -37.74043 -35.71035 -34.34854 -33.76906 -32.55548 -31.49965 -29.65011 -28.96934 -27.70498 -26.89656 -26.50541 -24.63586 -23.70688 -23.14952 -22.39013 -20.60586 -19.92063 -19.30271 -18.84300 -18.17889 -17.55757 -17.08657 -16.89838 -16.53957 -16.37990 -15.93512 -15.74614 -15.57528 -15.23441 -15.07539 -14.89095 -14.69078 -14.53192 -14.16107 -13.96237 -13.75799 -13.43028 -13.39863 -13.29170 -13.00590 -12.87730 -12.78829 -12.69268 -12.50562 -12.38638 -12.17515 -12.05950 -11.96073 -11.88861 -11.72665 -11.60275 -11.44031 -11.07482 -10.99307 -10.98602 -10.79806 -10.76922 -10.48567 -9.49182 -8.96927 -7.93245 -5.27939 1.41904 1.45143 1.53446 1.65514 1.93694 2.43726 2.64883 3.24371 3.32592 3.50337 3.62817 3.71741 3.80450 3.81819 3.93607 4.05230 4.18439 4.23893 4.31901 4.34185 4.38804 4.48309 4.50988 4.53350 4.59065 4.61061 4.63911 4.69018 4.72291 4.79775 4.80381 4.82886 4.88663 4.92351 4.96649 5.07624 5.10318 5.12629 5.21251 5.22932 5.23834 5.30621 5.34161 5.37235 5.43154 5.46974 5.53193 5.61491 5.73170 5.86201 6.33621 6.42749 6.86087 7.20407 7.55896 8.49236 9.23292 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.003076 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.767063 B = 9101.090086 C = 9982.281604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 H 0.087 0.913 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.059 4.059 9 H 0.060 0.940 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.578 6.578 13 N -0.617 5.617 14 C 0.080 3.920 15 C 0.037 3.963 16 O -0.363 6.363 17 C 0.080 3.920 18 C 0.153 3.847 19 N -0.635 5.635 20 C -0.234 4.234 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.956 5.956 24 Si 0.983 3.017 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.267 1.267 28 C 0.133 3.867 29 C 0.108 3.892 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.031 0.969 47 H 0.040 0.960 48 H 0.006 0.994 49 H 0.247 0.753 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.079 0.921 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 15.473 -17.530 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 H 0.105 0.895 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.078 4.078 9 H 0.079 0.921 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.458 6.458 13 N -0.351 5.351 14 C -0.042 4.042 15 C -0.039 4.039 16 O -0.281 6.281 17 C 0.038 3.962 18 C 0.027 3.973 19 N -0.361 5.361 20 C -0.362 4.362 21 H 0.104 0.896 22 C -0.262 4.262 23 N -0.605 5.605 24 Si 0.810 3.190 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.192 1.192 28 C 0.008 3.992 29 C -0.016 4.016 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.097 0.903 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.345 14.879 -17.297 23.682 hybrid contribution -0.662 -1.565 0.676 1.829 sum 5.683 13.314 -16.622 22.042 Atomic orbital electron populations 1.22018 0.94847 1.01900 1.02429 1.21110 0.96273 0.99353 0.93080 0.89480 1.21550 1.00416 0.95150 0.97817 1.21565 1.01035 0.96144 0.96788 1.21476 1.00223 0.98630 0.95097 1.21677 1.00046 0.96339 0.97872 1.20853 0.99748 0.94042 0.93140 0.92131 1.21906 1.02499 1.02180 0.90302 1.21495 0.80738 0.82769 0.85167 1.90649 1.38452 1.30076 1.86608 1.48359 1.47101 1.34165 1.05431 1.22637 0.91047 0.88326 1.02205 1.23192 0.95178 1.00058 0.85517 1.87879 1.63234 1.44920 1.32098 1.23044 0.90613 0.86210 0.96293 1.22497 0.97289 0.91860 0.85658 1.46185 1.29312 1.57209 1.03392 1.19449 1.05523 1.21941 0.89321 0.89566 1.25683 1.00439 1.02025 0.98050 1.70043 1.30180 1.46063 1.14204 0.85018 0.78598 0.77460 0.77886 1.20960 1.22103 1.19194 1.22720 0.90623 0.90874 0.95005 1.21844 0.95126 1.00042 0.84584 0.91838 0.91690 0.93137 0.90524 0.92327 0.91572 0.91668 0.92918 0.93089 0.93938 0.92375 0.85555 0.87499 0.87964 0.85429 0.84863 0.95086 0.94153 0.97614 0.94402 0.91367 0.91488 0.90304 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.15 71.98 0.59 -1.43 16 2 C -0.08 -1.11 2.72 -10.80 -0.03 -1.14 16 3 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 4 C -0.11 -1.56 5.45 30.59 0.17 -1.39 16 5 C -0.12 -1.95 5.65 30.60 0.17 -1.78 16 6 C -0.12 -2.58 5.92 30.60 0.18 -2.40 16 7 C -0.12 -3.08 4.67 30.59 0.14 -2.94 16 8 C -0.06 -1.18 1.61 -10.79 -0.02 -1.19 16 9 H 0.06 1.41 7.95 -2.39 -0.02 1.40 16 10 C -0.13 -2.40 3.04 29.85 0.09 -2.30 16 11 C 0.51 14.47 7.43 87.65 0.65 15.12 16 12 O -0.58 -21.48 13.46 -3.02 -0.04 -21.52 16 13 N -0.62 -17.00 3.03 -818.74 -2.48 -19.48 16 14 C 0.08 1.56 6.51 86.33 0.56 2.12 16 15 C 0.04 1.03 6.88 72.06 0.50 1.53 16 16 O -0.36 -13.63 10.52 -148.98 -1.57 -15.19 16 17 C 0.08 3.17 1.21 -10.64 -0.01 3.16 16 18 C 0.15 7.88 6.64 86.31 0.57 8.45 16 19 N -0.63 -34.68 3.70 -729.36 -2.70 -37.38 16 20 C -0.23 -13.81 10.70 84.03 0.90 -12.92 16 21 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 23 N -0.96 -60.35 11.39 21.65 0.25 -60.10 16 24 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 C 0.13 5.63 8.33 86.30 0.72 6.35 16 29 C 0.11 3.52 5.74 86.03 0.49 4.01 16 30 H 0.06 0.73 6.54 -2.39 -0.02 0.71 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.80 4.81 -2.38 -0.01 0.79 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.08 6.43 -2.39 -0.02 1.06 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.43 5.95 -2.39 -0.01 1.41 16 40 H 0.06 1.44 6.43 -2.39 -0.02 1.42 16 41 H 0.13 1.45 7.99 -2.39 -0.02 1.43 16 42 H 0.11 1.77 6.26 -2.38 -0.01 1.76 16 43 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.13 1.55 6.03 -2.39 -0.01 1.53 16 45 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.03 1.04 7.20 -2.39 -0.02 1.02 16 47 H 0.04 2.33 6.31 -2.39 -0.02 2.32 16 48 H 0.01 0.34 7.92 -2.39 -0.02 0.32 16 49 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 50 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 51 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 52 H 0.08 2.94 6.89 -2.38 -0.02 2.92 16 53 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -78.89 389.63 2.51 -76.37 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.89 Total: 18.29 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.14 Total: 9.58 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.94 Total: -116.96 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.61 Total: -36.72 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -78.89 2.51 -76.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053547157.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.336 kcal (2) G-P(sol) polarization free energy of solvation -78.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds