Wall clock time and date at job start Tue Mar 31 2020 20:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 C 1.53001 * 109.46963 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46886 * 299.99499 * 5 4 2 7 7 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 8 8 C 1.50703 * 109.46912 * 180.02562 * 6 5 4 9 9 O 1.21278 * 119.99818 * 240.00149 * 8 6 5 10 10 N 1.34777 * 119.99991 * 60.00288 * 8 6 5 11 11 C 1.46499 * 119.99824 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47125 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.52393 * 303.64055 * 12 11 10 14 14 C 1.55050 * 110.59322 * 180.66682 * 12 11 10 15 15 C 1.54994 * 102.12429 * 204.85755 * 14 12 11 16 16 C 1.53435 * 103.84443 * 20.85802 * 15 14 12 17 17 C 1.53217 * 115.02534 * 132.30721 * 16 15 14 18 18 N 1.47723 * 85.90064 * 93.03459 * 17 16 15 19 19 C 1.36932 * 134.43083 * 204.16108 * 18 17 16 20 20 H 1.08007 * 119.99638 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00132 * 359.93781 * 19 18 17 22 22 N 1.31619 * 120.00299 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 120.00036 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47000 * 90.00183 * 23 21 19 25 25 H 1.48497 * 109.47051 * 209.99995 * 23 21 19 26 26 H 1.48497 * 109.47120 * 330.00317 * 23 21 19 27 27 C 1.47717 * 91.13410 * 24.11851 * 18 17 16 28 28 O 1.42961 * 108.17097 * 1.69173 * 16 15 14 29 29 C 1.53002 * 109.47233 * 60.00670 * 6 5 4 30 30 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 31 31 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 33 33 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 34 34 H 1.09000 * 109.46497 * 300.00109 * 4 2 1 35 35 H 1.09002 * 109.47067 * 59.99861 * 4 2 1 36 36 H 1.09001 * 109.46652 * 179.97438 * 5 4 2 37 37 H 1.08992 * 109.47514 * 59.99933 * 5 4 2 38 38 H 0.96998 * 120.00094 * 359.97438 * 10 8 6 39 39 H 1.09004 * 109.47041 * 299.99672 * 11 10 8 40 40 H 1.09002 * 109.47391 * 59.99855 * 11 10 8 41 41 H 1.09002 * 110.87170 * 323.01975 * 14 12 11 42 42 H 1.09003 * 110.87084 * 86.69675 * 14 12 11 43 43 H 1.08994 * 110.55257 * 262.26650 * 15 14 12 44 44 H 1.09005 * 110.67652 * 139.50435 * 15 14 12 45 45 H 1.08998 * 113.80458 * 207.27949 * 17 16 15 46 46 H 1.09004 * 113.80346 * 338.79334 * 17 16 15 47 47 H 0.96996 * 120.00068 * 179.97438 * 22 21 19 48 48 H 1.08995 * 113.80534 * 221.63803 * 27 18 17 49 49 H 1.09001 * 113.80738 * 90.13125 * 27 18 17 50 50 H 1.09002 * 109.47075 * 59.99068 * 29 6 5 51 51 H 1.08996 * 109.47407 * 180.02562 * 29 6 5 52 52 H 1.09001 * 109.47375 * 59.99908 * 30 2 1 53 53 H 1.09002 * 109.47497 * 299.99550 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7206 1.2494 6 6 4.0805 -1.4416 0.0002 7 1 3.7175 -2.4694 0.0000 8 6 5.5876 -1.4415 0.0007 9 8 6.1942 -0.9161 -0.9086 10 7 6.2611 -2.0254 1.0116 11 6 7.7261 -2.0248 1.0123 12 6 8.2357 -2.7460 2.2618 13 1 7.8293 -2.2846 3.1618 14 6 9.7858 -2.7459 2.2974 15 6 10.0914 -3.9886 3.1718 16 6 8.8092 -4.8263 3.0802 17 6 9.0262 -6.3122 2.7759 18 7 9.0162 -6.5047 4.2405 19 6 9.5321 -7.4496 5.0868 20 1 9.3815 -7.3599 6.1525 21 6 10.2479 -8.5230 4.5748 22 7 10.4313 -8.6325 3.2761 23 14 10.9523 -9.8117 5.7294 24 1 9.9550 -10.8932 5.9316 25 1 12.1890 -10.3829 5.1382 26 1 11.2728 -9.1833 7.0361 27 6 8.2278 -5.2695 4.4269 28 8 7.8961 -4.1503 2.2125 29 6 3.5705 -0.7204 -1.2491 30 6 2.0400 -0.7212 -1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6767 -0.2074 2.1392 35 1 1.6768 -1.7490 1.2492 36 1 3.9335 -1.2341 2.1396 37 1 3.9331 0.3071 1.2496 38 1 5.7759 -2.4453 1.7390 39 1 8.0901 -2.5381 0.1223 40 1 8.0891 -0.9970 1.0130 41 1 10.1973 -2.8656 1.2951 42 1 10.1635 -1.8378 2.7674 43 1 10.2825 -3.6930 4.2034 44 1 10.9400 -4.5426 2.7702 45 1 8.1870 -6.7837 2.2645 46 1 9.9874 -6.5301 2.3102 47 1 10.9318 -9.3824 2.9185 48 1 8.5562 -4.6610 5.2695 49 1 7.1497 -5.4288 4.4097 50 1 3.9334 0.3075 -1.2488 51 1 3.9337 -1.2342 -2.1391 52 1 1.6766 -0.2074 -2.1392 53 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053686088.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:31 Heat of formation + Delta-G solvation = -78.124728 kcal Electronic energy + Delta-G solvation = -29618.851244 eV Core-core repulsion = 25682.957295 eV Total energy + Delta-G solvation = -3935.893949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.48996 -41.03972 -38.97035 -38.04980 -35.67883 -34.12555 -33.71074 -33.01770 -31.67677 -30.63113 -28.87503 -27.55300 -26.77978 -25.22493 -23.63812 -23.52678 -22.85169 -22.33045 -21.05712 -20.57533 -20.37505 -18.77594 -18.19757 -17.77166 -17.00407 -16.97695 -16.47457 -16.26479 -15.72537 -15.60870 -15.45106 -15.16026 -15.07640 -14.80887 -14.78058 -14.26092 -14.04689 -13.97258 -13.57251 -13.36516 -13.32354 -13.09365 -13.05376 -12.95572 -12.84297 -12.61893 -12.40788 -12.33424 -12.21765 -12.06684 -11.99264 -11.87797 -11.85682 -11.62111 -11.57678 -11.46342 -11.23751 -10.90102 -10.88201 -10.64232 -10.37540 -10.08538 -8.98187 -7.93246 -5.27913 1.45204 1.47539 1.56268 1.64828 2.19469 2.42827 2.79450 3.25617 3.43488 3.57208 3.62203 3.71270 3.72807 3.78587 3.79289 4.01741 4.12895 4.15930 4.18790 4.27446 4.45187 4.46580 4.51380 4.54723 4.59011 4.60230 4.66826 4.74020 4.82267 4.85774 4.91637 4.92527 4.96305 5.02281 5.03489 5.07257 5.10794 5.14515 5.16451 5.19990 5.21825 5.28027 5.34372 5.38072 5.43075 5.44824 5.47857 5.48052 5.63548 5.86638 6.15112 6.55350 6.87451 7.25029 7.56909 8.51327 9.24255 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.002075 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.900615 B =13488.525395 C =14197.754217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.105 4.105 6 C -0.101 4.101 7 H 0.107 0.893 8 C 0.513 3.487 9 O -0.587 6.587 10 N -0.716 5.716 11 C 0.132 3.868 12 C 0.065 3.935 13 H 0.098 0.902 14 C -0.135 4.135 15 C -0.112 4.112 16 C 0.079 3.921 17 C 0.168 3.832 18 N -0.631 5.631 19 C -0.232 4.232 20 H 0.089 0.911 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.982 3.018 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.264 1.264 27 C 0.110 3.890 28 O -0.373 6.373 29 C -0.096 4.096 30 C -0.110 4.110 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.007 0.993 46 H 0.047 0.953 47 H 0.249 0.751 48 H 0.067 0.933 49 H 0.044 0.956 50 H 0.056 0.944 51 H 0.052 0.948 52 H 0.068 0.932 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.911 21.255 -3.714 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.143 4.143 6 C -0.122 4.122 7 H 0.125 0.875 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.368 5.368 11 C 0.008 3.992 12 C 0.007 3.993 13 H 0.116 0.884 14 C -0.173 4.173 15 C -0.150 4.150 16 C 0.038 3.962 17 C 0.043 3.957 18 N -0.359 5.359 19 C -0.360 4.360 20 H 0.107 0.893 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.810 3.190 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.188 1.188 27 C -0.015 4.015 28 O -0.292 6.292 29 C -0.134 4.134 30 C -0.147 4.147 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.025 0.975 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.087 0.913 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.470 21.270 -4.378 26.663 hybrid contribution 0.534 -1.591 0.526 1.759 sum -14.937 19.679 -3.853 25.004 Atomic orbital electron populations 1.21809 0.94483 1.02047 1.01955 1.21170 0.95996 0.99451 0.94654 0.91537 1.21589 0.93693 1.01459 0.98025 1.21517 0.96968 1.00478 0.95365 1.21386 0.89012 1.03047 0.98789 0.87484 1.21231 0.91273 0.76656 0.80767 1.90666 1.71507 1.47213 1.37349 1.45952 1.07173 1.57929 1.25729 1.21367 0.80325 1.00532 0.96972 1.23538 0.95273 0.82422 0.98028 0.88448 1.23133 0.94383 0.98666 1.01100 1.22392 0.95656 0.95421 1.01562 1.23725 0.89845 0.92501 0.90142 1.22178 0.97811 0.89695 0.86050 1.45992 1.60691 1.26209 1.03023 1.19402 1.26196 1.00918 0.89496 0.89319 1.25698 1.01941 1.00926 0.97603 1.70023 1.46026 1.32267 1.12062 0.85025 0.77089 0.78725 0.78165 1.21475 1.22093 1.18831 1.23134 0.95126 0.87027 0.96218 1.88792 1.55331 1.19026 1.66043 1.21302 0.96169 1.00181 0.95772 1.21606 0.93517 1.01296 0.98297 0.92516 0.92234 0.92591 0.90599 0.91198 0.90240 0.91878 0.75023 0.92722 0.88841 0.90360 0.86885 0.89681 0.92079 0.97480 0.93433 0.94207 0.91487 0.93844 0.92488 0.92911 0.91339 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 71.98 0.66 -0.68 16 2 C -0.09 -1.04 2.72 -10.79 -0.03 -1.07 16 3 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.14 5.20 30.60 0.16 -0.98 16 5 C -0.11 -1.32 5.10 30.59 0.16 -1.16 16 6 C -0.10 -1.71 2.52 -11.54 -0.03 -1.73 16 7 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 8 C 0.51 12.06 7.15 87.66 0.63 12.68 16 9 O -0.59 -18.56 15.98 -3.02 -0.05 -18.61 16 10 N -0.72 -15.00 5.43 -463.05 -2.52 -17.52 16 11 C 0.13 2.95 5.42 86.38 0.47 3.42 16 12 C 0.06 1.48 3.38 31.30 0.11 1.59 16 13 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 14 C -0.13 -3.03 6.60 31.98 0.21 -2.82 16 15 C -0.11 -3.54 6.46 31.42 0.20 -3.33 16 16 C 0.08 2.95 1.56 -10.45 -0.02 2.93 16 17 C 0.17 8.43 7.00 86.21 0.60 9.03 16 18 N -0.63 -32.66 3.68 -733.70 -2.70 -35.36 16 19 C -0.23 -12.99 10.70 84.03 0.90 -12.09 16 20 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 22 N -0.96 -58.39 11.39 21.65 0.25 -58.15 16 23 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.11 4.40 8.43 86.22 0.73 5.13 16 28 O -0.37 -12.22 10.98 -148.98 -1.64 -13.85 16 29 C -0.10 -1.70 4.50 30.61 0.14 -1.56 16 30 C -0.11 -1.41 5.21 30.61 0.16 -1.25 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.84 7.56 -2.39 -0.02 0.82 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.41 7.21 7.89 -92.71 -0.73 6.47 16 39 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 2.50 7.74 -2.39 -0.02 2.48 16 44 H 0.06 2.20 7.75 -2.38 -0.02 2.18 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.05 2.64 6.90 -2.39 -0.02 2.62 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.07 2.38 7.85 -2.39 -0.02 2.36 16 49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 51 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.40 411.35 1.02 -71.38 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.14 Total: 19.85 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.51 Total: 4.61 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -4.97 Total: -111.03 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.68 Total: -32.46 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.40 1.02 -71.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053686088.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.745 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds