Wall clock time and date at job start Tue Mar 31 2020 20:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47377 * 2 1 4 4 C 1.52997 * 109.47167 * 119.99934 * 2 1 3 5 5 C 1.52999 * 109.47510 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47149 * 300.00440 * 5 4 2 7 7 H 1.09002 * 109.46771 * 299.99786 * 6 5 4 8 8 C 1.50694 * 109.47303 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00235 * 240.00107 * 8 6 5 10 10 N 1.34781 * 120.00087 * 59.99469 * 8 6 5 11 11 C 1.46497 * 120.00346 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47527 * 180.02562 * 11 10 8 13 13 H 1.08995 * 110.28536 * 57.87545 * 12 11 10 14 14 C 1.54554 * 110.32684 * 180.02562 * 12 11 10 15 15 C 1.54761 * 104.08025 * 142.58975 * 14 12 11 16 16 C 1.53348 * 103.67467 * 359.13871 * 15 14 12 17 17 C 1.52312 * 116.12888 * 108.91046 * 16 15 14 18 18 N 1.47279 * 87.68564 * 91.18097 * 17 16 15 19 19 C 1.36945 * 135.92666 * 206.12474 * 18 17 16 20 20 H 1.07997 * 119.99756 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47281 * 88.14630 * 26.38087 * 18 17 16 28 28 O 1.43105 * 106.44310 * 337.45105 * 16 15 14 29 29 C 1.52997 * 109.47274 * 59.99415 * 6 5 4 30 30 C 1.52997 * 109.47167 * 300.00247 * 29 6 5 31 31 H 1.09002 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47277 * 300.00503 * 1 2 3 33 33 H 1.09004 * 109.46875 * 60.00153 * 1 2 3 34 34 H 1.09001 * 109.47179 * 300.00043 * 4 2 1 35 35 H 1.09002 * 109.46919 * 59.99785 * 4 2 1 36 36 H 1.08994 * 109.47245 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.47110 * 60.00019 * 5 4 2 38 38 H 0.97002 * 119.99964 * 0.02562 * 10 8 6 39 39 H 1.09002 * 109.47019 * 60.00222 * 11 10 8 40 40 H 1.09001 * 109.47104 * 300.00464 * 11 10 8 41 41 H 1.09003 * 110.50474 * 23.93704 * 14 12 11 42 42 H 1.09004 * 110.50639 * 261.24171 * 14 12 11 43 43 H 1.09003 * 110.58459 * 240.58830 * 15 14 12 44 44 H 1.09002 * 110.58001 * 117.68322 * 15 14 12 45 45 H 1.09002 * 113.51530 * 336.47269 * 17 16 15 46 46 H 1.09002 * 113.51626 * 205.88512 * 17 16 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 48 48 H 1.09001 * 113.51763 * 88.31845 * 27 18 17 49 49 H 1.08997 * 113.51811 * 218.91370 * 27 18 17 50 50 H 1.09002 * 109.46919 * 60.00462 * 29 6 5 51 51 H 1.09001 * 109.47179 * 180.02562 * 29 6 5 52 52 H 1.09004 * 109.46875 * 180.02562 * 30 29 6 53 53 H 1.09002 * 109.47377 * 299.99934 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4434 -0.0003 7 1 3.7157 -2.4709 -0.0001 8 6 5.5864 -1.4434 -0.0009 9 8 6.1925 -0.9185 -0.9108 10 7 6.2607 -2.0268 1.0099 11 6 7.7257 -2.0273 1.0091 12 6 8.2362 -2.7486 2.2581 13 1 7.8492 -3.7671 2.2910 14 6 9.7816 -2.7602 2.2775 15 6 10.1408 -2.5694 3.7707 16 6 8.7761 -2.4450 4.4588 17 6 8.3504 -3.6250 5.3227 18 7 8.9863 -2.9430 6.4627 19 6 9.5488 -3.3282 7.6504 20 1 9.5871 -4.3744 7.9155 21 6 10.0705 -2.3740 8.5130 22 7 10.0241 -1.0989 8.1896 23 14 10.8371 -2.8993 10.1334 24 1 11.3167 -1.6999 10.8660 25 1 9.8228 -3.6084 10.9540 26 1 11.9819 -3.8072 9.8681 27 6 8.7471 -1.6653 5.7703 28 8 7.8507 -2.0263 3.4507 29 6 3.5695 -0.7222 -1.2495 30 6 2.0395 -0.7216 -1.2492 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6766 -0.2074 2.1392 35 1 1.6766 -1.7489 1.2492 36 1 3.9332 -1.2352 2.1392 37 1 3.9337 0.3057 1.2488 38 1 5.7760 -2.4469 1.7376 39 1 8.0894 -0.9998 1.0084 40 1 8.0883 -2.5417 0.1192 41 1 10.1770 -1.9377 1.6814 42 1 10.1609 -3.7146 1.9123 43 1 10.7252 -1.6600 3.9111 44 1 10.6827 -3.4365 4.1482 45 1 8.8366 -4.5616 5.0497 46 1 7.2694 -3.7233 5.4226 47 1 10.3884 -0.4321 8.7926 48 1 7.7751 -1.2252 5.9931 49 1 9.5668 -0.9544 5.8737 50 1 3.9332 0.3054 -1.2497 51 1 3.9321 -1.2365 -2.1395 52 1 1.6762 -0.2082 -2.1395 53 1 1.6758 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053686089.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:35 Heat of formation + Delta-G solvation = -74.246600 kcal Electronic energy + Delta-G solvation = -29744.596482 eV Core-core repulsion = 25808.870701 eV Total energy + Delta-G solvation = -3935.725781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.59121 -41.08800 -38.99157 -38.13929 -35.68169 -34.15924 -33.72666 -33.04562 -31.68585 -30.66895 -28.93842 -27.59875 -26.63105 -25.25139 -23.80015 -23.54416 -22.87829 -22.23792 -21.05445 -20.57827 -20.43383 -18.75896 -18.20377 -17.60717 -17.04847 -17.00961 -16.40770 -16.32178 -16.01252 -15.72442 -15.28113 -15.14425 -15.06943 -14.97843 -14.73436 -14.23279 -14.09325 -13.96156 -13.59722 -13.37280 -13.27021 -13.09819 -13.05427 -13.01935 -12.80859 -12.59722 -12.45149 -12.36421 -12.25380 -12.04298 -12.00167 -11.93840 -11.87552 -11.59239 -11.57579 -11.35099 -11.24431 -10.90710 -10.89901 -10.64639 -10.41516 -10.08485 -8.99951 -7.94084 -5.29300 1.45594 1.49471 1.55699 1.64081 2.20289 2.42379 2.79986 3.27346 3.46091 3.52843 3.62440 3.70427 3.72897 3.77070 3.79020 4.04181 4.14716 4.15959 4.17876 4.24824 4.42158 4.46048 4.50336 4.53649 4.57779 4.59504 4.65358 4.72924 4.79790 4.85084 4.89106 4.93114 4.95387 5.01383 5.03241 5.06289 5.10598 5.14210 5.15990 5.18049 5.21460 5.27765 5.34020 5.35706 5.43041 5.44224 5.44452 5.47816 5.62644 5.84296 6.08212 6.55183 6.85030 7.24822 7.55150 8.53561 9.23787 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002229 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.313006 B =12560.609566 C =13789.900962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.097 4.097 7 H 0.120 0.880 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.717 5.717 11 C 0.132 3.868 12 C 0.064 3.936 13 H 0.094 0.906 14 C -0.135 4.135 15 C -0.110 4.110 16 C 0.073 3.927 17 C 0.109 3.891 18 N -0.629 5.629 19 C -0.229 4.229 20 H 0.091 0.909 21 C -0.067 4.067 22 N -0.954 5.954 23 Si 0.984 3.016 24 H -0.296 1.296 25 H -0.276 1.276 26 H -0.272 1.272 27 C 0.165 3.835 28 O -0.367 6.367 29 C -0.096 4.096 30 C -0.107 4.107 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.413 0.587 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.250 0.750 48 H 0.011 0.989 49 H 0.044 0.956 50 H 0.048 0.952 51 H 0.061 0.939 52 H 0.069 0.931 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 -3.822 -19.889 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.118 4.118 7 H 0.137 0.863 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.368 5.368 11 C 0.008 3.992 12 C 0.006 3.994 13 H 0.112 0.888 14 C -0.173 4.173 15 C -0.148 4.148 16 C 0.033 3.967 17 C -0.016 4.016 18 N -0.357 5.357 19 C -0.357 4.357 20 H 0.109 0.891 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.812 3.188 24 H -0.222 1.222 25 H -0.202 1.202 26 H -0.198 1.198 27 C 0.039 3.961 28 O -0.286 6.286 29 C -0.135 4.135 30 C -0.144 4.144 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.249 0.751 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.029 0.971 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.087 0.913 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.486 -3.273 -20.203 25.074 hybrid contribution 0.504 0.142 1.659 1.740 sum -13.982 -3.131 -18.544 23.434 Atomic orbital electron populations 1.21801 0.94297 1.02269 1.01829 1.21177 0.96147 0.99244 0.94892 0.92267 1.21575 0.93374 1.01764 0.97900 1.21518 0.97247 1.00129 0.95845 1.21366 0.88951 1.03399 0.98127 0.86251 1.21244 0.91305 0.76562 0.80854 1.90665 1.71535 1.46757 1.37736 1.45963 1.07207 1.58325 1.25340 1.21417 0.80330 1.00840 0.96634 1.23390 0.95140 0.96153 0.84684 0.88833 1.22947 0.94208 1.04797 0.95306 1.22242 0.94992 1.02608 0.94947 1.23340 0.89532 0.96252 0.87621 1.22841 0.96588 0.95993 0.86220 1.45622 1.66850 1.04218 1.19013 1.19283 1.29981 0.93077 0.93350 0.89114 1.25722 1.02501 0.95324 1.02502 1.70029 1.51569 1.00424 1.38230 0.85072 0.78445 0.76589 0.78742 1.22183 1.20211 1.19750 1.21914 0.97177 0.90502 0.86488 1.88933 1.53723 1.65966 1.19939 1.21302 0.96236 0.99964 0.95950 1.21581 0.93439 1.01554 0.97873 0.92013 0.92686 0.92464 0.91430 0.90396 0.90840 0.93090 0.75059 0.92578 0.88850 0.89614 0.87550 0.91944 0.90464 0.91953 0.93804 0.94156 0.97105 0.93730 0.93292 0.92035 0.91252 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.82 16 2 C -0.10 -1.21 2.72 -10.80 -0.03 -1.24 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.39 5.20 30.59 0.16 -1.23 16 5 C -0.11 -1.76 5.10 30.59 0.16 -1.61 16 6 C -0.10 -1.63 2.53 -11.54 -0.03 -1.66 16 7 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 8 C 0.51 12.01 7.15 87.65 0.63 12.64 16 9 O -0.59 -18.42 15.98 -3.03 -0.05 -18.47 16 10 N -0.72 -15.12 5.41 -463.07 -2.50 -17.62 16 11 C 0.13 2.93 5.29 86.38 0.46 3.39 16 12 C 0.06 1.48 3.35 31.12 0.10 1.58 16 13 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 14 C -0.13 -3.02 6.65 31.72 0.21 -2.81 16 15 C -0.11 -3.55 6.50 31.31 0.20 -3.34 16 16 C 0.07 2.76 1.39 -11.04 -0.02 2.74 16 17 C 0.11 4.35 8.18 83.49 0.68 5.03 16 18 N -0.63 -32.47 3.77 -740.36 -2.79 -35.26 16 19 C -0.23 -12.77 10.74 84.03 0.90 -11.87 16 20 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 22 N -0.95 -58.14 11.51 21.65 0.25 -57.89 16 23 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.17 8.21 6.98 83.58 0.58 8.80 16 28 O -0.37 -11.95 11.12 -148.98 -1.66 -13.61 16 29 C -0.10 -1.67 4.49 30.59 0.14 -1.54 16 30 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.15 7.57 -2.39 -0.02 1.14 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.41 7.39 7.89 -92.71 -0.73 6.66 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.09 1.78 7.87 -2.39 -0.02 1.77 16 42 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.06 2.19 8.12 -2.39 -0.02 2.17 16 44 H 0.08 2.54 7.92 -2.39 -0.02 2.52 16 45 H 0.06 2.22 8.06 -2.39 -0.02 2.21 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 49 H 0.04 2.48 7.13 -2.39 -0.02 2.46 16 50 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 51 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 52 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.60 412.00 0.85 -70.75 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.13 Total: 21.26 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.44 Total: 3.53 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -5.04 Total: -110.77 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.71 Total: -32.08 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.60 0.85 -70.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053686089.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.501 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds