Wall clock time and date at job start Tue Mar 31 2020 21:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.51228 * 2 1 4 4 C 1.53276 * 109.51293 * 239.89713 * 2 1 3 5 5 N 1.47172 * 108.55578 * 187.04329 * 4 2 1 6 6 C 1.34768 * 121.07991 * 231.22691 * 5 4 2 7 7 O 1.21286 * 120.00443 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.00335 * 0.02562 * 6 5 4 9 9 C 1.52997 * 109.47355 * 180.02562 * 8 6 5 10 10 C 1.54883 * 110.48935 * 68.24275 * 9 8 6 11 11 C 1.55235 * 102.59098 * 156.67576 * 10 9 8 12 12 C 1.54268 * 104.23045 * 322.08347 * 11 10 9 13 13 C 1.53876 * 106.59974 * 23.60798 * 12 11 10 14 14 C 1.47336 * 117.84129 * 51.50301 * 5 4 2 15 15 C 1.52763 * 108.21215 * 310.53648 * 14 5 4 16 16 C 1.54376 * 110.54393 * 286.68846 * 15 14 5 17 17 C 1.54465 * 102.87618 * 207.58761 * 16 15 14 18 18 N 1.47093 * 107.29198 * 21.49866 * 17 16 15 19 19 C 1.36939 * 125.62936 * 180.99476 * 18 17 16 20 20 H 1.08006 * 119.99609 * 173.94124 * 19 18 17 21 21 C 1.38812 * 120.00259 * 353.94245 * 19 18 17 22 22 N 1.31623 * 119.99506 * 6.85252 * 21 19 18 23 23 Si 1.86793 * 119.99989 * 186.85086 * 21 19 18 24 24 H 1.48498 * 109.47201 * 94.98730 * 23 21 19 25 25 H 1.48498 * 109.47155 * 214.98805 * 23 21 19 26 26 H 1.48501 * 109.47318 * 334.98569 * 23 21 19 27 27 C 1.47574 * 108.73612 * 0.99721 * 18 17 16 28 28 O 1.41878 * 111.39452 * 50.23819 * 15 14 5 29 29 H 1.08997 * 109.46849 * 180.10268 * 1 2 3 30 30 H 1.08998 * 109.46988 * 300.09984 * 1 2 3 31 31 H 1.08996 * 109.47297 * 60.10311 * 1 2 3 32 32 H 1.09004 * 109.62492 * 67.32758 * 4 2 1 33 33 H 1.08994 * 109.77995 * 306.85247 * 4 2 1 34 34 H 1.08999 * 109.47104 * 59.99709 * 8 6 5 35 35 H 1.09003 * 109.46860 * 299.99916 * 8 6 5 36 36 H 1.08995 * 110.43231 * 305.69336 * 9 8 6 37 37 H 1.09004 * 110.75347 * 275.06786 * 10 9 8 38 38 H 1.09003 * 110.75978 * 38.43458 * 10 9 8 39 39 H 1.08994 * 110.47161 * 203.39192 * 11 10 9 40 40 H 1.09004 * 110.46693 * 80.77191 * 11 10 9 41 41 H 1.08998 * 110.03018 * 264.32611 * 12 11 10 42 42 H 1.08992 * 110.03186 * 142.89585 * 12 11 10 43 43 H 1.08993 * 110.03734 * 240.71706 * 13 12 11 44 44 H 1.09006 * 110.07333 * 119.30459 * 13 12 11 45 45 H 1.08996 * 109.64709 * 70.28054 * 14 5 4 46 46 H 1.09002 * 109.64156 * 190.92055 * 14 5 4 47 47 H 1.08993 * 110.73320 * 325.93549 * 16 15 14 48 48 H 1.09002 * 110.73203 * 89.24548 * 16 15 14 49 49 H 1.08999 * 109.88198 * 262.08041 * 17 16 15 50 50 H 1.08997 * 110.00518 * 140.98983 * 17 16 15 51 51 H 0.96997 * 119.99305 * 179.97438 * 22 21 19 52 52 H 1.08997 * 110.37371 * 217.84500 * 27 18 17 53 53 H 1.09003 * 110.37942 * 95.49805 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2499 5 7 3.5036 -0.8621 -1.1458 6 6 4.3122 -0.4737 -2.1516 7 8 5.5142 -0.5955 -2.0449 8 6 3.7231 0.1130 -3.4085 9 6 4.8487 0.4667 -4.3825 10 6 5.5318 -0.8188 -4.9115 11 6 6.1555 -0.3438 -6.2513 12 6 5.1078 0.6269 -6.8343 13 6 4.2768 1.1422 -5.6461 14 6 4.0537 -1.4437 0.0910 15 6 3.4217 -0.7224 1.2801 16 6 4.0037 0.7004 1.4223 17 6 3.8571 0.9827 2.9338 18 7 3.7492 -0.3175 3.6131 19 6 3.5862 -0.5028 4.9600 20 1 3.4194 -1.4952 5.3523 21 6 3.6355 0.5847 5.8213 22 7 3.7034 1.8062 5.3355 23 14 3.6055 0.3147 7.6693 24 1 4.9965 0.2908 8.1888 25 1 2.8536 1.4184 8.3187 26 1 2.9426 -0.9797 7.9698 27 6 3.8456 -1.3893 2.6032 28 8 2.0082 -0.6776 1.1665 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5122 -0.8909 32 1 1.7912 -0.1444 -2.1379 33 1 1.5854 -1.7120 -1.3168 34 1 3.1606 1.0130 -3.1604 35 1 3.0575 -0.6152 -3.8720 36 1 5.5792 1.1161 -3.9002 37 1 6.3046 -1.1575 -4.2213 38 1 4.7960 -1.6041 -5.0847 39 1 6.3072 -1.1893 -6.9222 40 1 7.0972 0.1748 -6.0707 41 1 4.4643 0.1018 -7.5401 42 1 5.6058 1.4597 -7.3307 43 1 3.2301 0.8672 -5.7752 44 1 4.3708 2.2252 -5.5655 45 1 3.8147 -2.5063 0.1342 46 1 5.1350 -1.3071 0.1108 47 1 5.0524 0.7197 1.1261 48 1 3.4234 1.4148 0.8383 49 1 2.9579 1.5714 3.1155 50 1 4.7320 1.5203 3.2993 51 1 3.7375 2.5661 5.9374 52 1 3.1676 -2.2060 2.8508 53 1 4.8705 -1.7538 2.5331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071127605.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:06 Heat of formation + Delta-G solvation = -81.608142 kcal Electronic energy + Delta-G solvation = -31073.775808 eV Core-core repulsion = 27137.730806 eV Total energy + Delta-G solvation = -3936.045002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.84341 -40.32745 -38.61334 -37.91445 -35.75878 -34.79840 -33.02494 -32.50924 -31.09233 -30.05257 -29.46919 -27.89122 -27.38275 -26.43023 -24.94976 -23.12896 -22.05601 -21.54920 -21.00353 -20.62682 -19.90180 -18.97610 -18.15924 -17.89786 -17.17572 -16.82348 -16.73034 -16.24806 -15.99104 -15.66715 -15.58273 -15.38981 -15.07482 -14.62822 -14.58745 -14.10878 -14.05757 -13.93276 -13.74957 -13.58521 -13.13378 -13.05553 -12.97613 -12.84462 -12.81675 -12.75882 -12.26133 -12.15204 -12.09913 -12.01212 -11.90888 -11.87531 -11.82349 -11.72191 -11.61603 -11.47091 -11.45140 -11.19026 -10.90651 -10.70187 -10.65659 -9.50102 -8.92532 -7.87511 -5.22412 1.44325 1.47172 1.55999 1.63880 1.87680 2.47913 2.63099 3.31361 3.39457 3.51314 3.59548 3.71750 3.80990 3.84887 3.86899 3.93567 3.97432 4.09226 4.22905 4.33774 4.38083 4.42731 4.44668 4.48551 4.61517 4.63504 4.64168 4.73367 4.74757 4.75370 4.79174 4.84472 4.85665 4.91651 4.94087 4.98941 5.05527 5.12229 5.14846 5.15610 5.26810 5.32486 5.36404 5.39522 5.42341 5.55979 5.56054 5.58022 5.67631 6.15405 6.38031 6.41503 7.06649 7.16956 7.73196 8.38948 9.24054 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021435 B = 0.002649 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.967894 B =10567.129089 C =11067.531776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 H 0.052 0.948 4 C 0.084 3.916 5 N -0.615 5.615 6 C 0.510 3.490 7 O -0.578 6.578 8 C -0.125 4.125 9 C -0.079 4.079 10 C -0.118 4.118 11 C -0.127 4.127 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.107 3.893 15 C 0.111 3.889 16 C -0.147 4.147 17 C 0.198 3.802 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.982 3.018 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.145 3.855 28 O -0.372 6.372 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.004 0.996 50 H 0.007 0.993 51 H 0.246 0.754 52 H 0.052 0.948 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 -4.169 -26.785 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 H 0.070 0.930 4 C -0.038 4.038 5 N -0.349 5.349 6 C 0.300 3.700 7 O -0.458 6.458 8 C -0.165 4.165 9 C -0.098 4.098 10 C -0.155 4.155 11 C -0.165 4.165 12 C -0.160 4.160 13 C -0.153 4.153 14 C -0.016 4.016 15 C 0.069 3.931 16 C -0.186 4.186 17 C 0.073 3.927 18 N -0.347 5.347 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.190 1.190 27 C 0.019 3.981 28 O -0.291 6.291 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.022 0.978 50 H 0.025 0.975 51 H 0.056 0.944 52 H 0.070 0.930 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.893 -4.203 -26.432 27.208 hybrid contribution 0.577 0.430 1.638 1.789 sum -4.316 -3.774 -24.794 25.449 Atomic orbital electron populations 1.21714 0.90373 1.03700 1.03468 1.22801 0.96942 0.95369 0.84963 0.92990 1.22692 0.78273 1.03245 0.99631 1.48339 1.08043 1.62369 1.16105 1.21472 0.86340 0.76806 0.85335 1.90678 1.16642 1.56753 1.81702 1.21864 0.99790 1.03358 0.91460 1.21735 0.95904 0.97126 0.94995 1.22579 0.99619 0.97073 0.96266 1.22429 0.98419 0.99226 0.96395 1.22125 0.97387 0.98772 0.97716 1.22196 1.00412 1.00010 0.92691 1.21891 0.99408 0.97625 0.82723 1.22134 0.81824 0.94555 0.94589 1.23129 1.00462 0.97746 0.97222 1.20764 0.97061 0.87170 0.87719 1.44718 1.85699 1.01599 1.02691 1.19479 1.41511 0.94138 0.81809 0.89776 1.25717 1.02529 0.95063 1.02776 1.70218 1.58127 0.97744 1.34051 0.85011 0.77347 0.77267 0.79431 1.21400 1.22106 1.18998 1.21537 0.98152 0.91706 0.86680 1.87874 1.19466 1.77228 1.44550 0.91006 0.93513 0.87367 0.85119 0.88849 0.86769 0.85919 0.92709 0.93556 0.91115 0.91162 0.92734 0.90688 0.91681 0.89675 0.91504 0.89575 0.89653 0.91657 0.90744 0.97756 0.97528 0.94443 0.92952 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 2 C 0.06 1.39 3.20 30.69 0.10 1.48 16 3 H 0.05 1.39 6.24 -2.38 -0.01 1.37 16 4 C 0.08 1.43 5.81 86.34 0.50 1.93 16 5 N -0.62 -14.72 2.94 -817.90 -2.41 -17.13 16 6 C 0.51 12.45 7.51 87.66 0.66 13.11 16 7 O -0.58 -19.16 14.10 -3.05 -0.04 -19.20 16 8 C -0.13 -1.83 3.43 29.85 0.10 -1.73 16 9 C -0.08 -1.33 2.45 -9.72 -0.02 -1.36 16 10 C -0.12 -2.17 5.72 32.00 0.18 -1.98 16 11 C -0.13 -1.92 6.84 31.79 0.22 -1.70 16 12 C -0.12 -1.42 6.80 31.32 0.21 -1.20 16 13 C -0.12 -1.32 6.37 31.32 0.20 -1.12 16 14 C 0.11 3.20 5.33 86.14 0.46 3.66 16 15 C 0.11 4.01 0.84 -10.03 -0.01 4.00 16 16 C -0.15 -5.99 5.88 31.56 0.19 -5.81 16 17 C 0.20 10.54 5.40 86.76 0.47 11.01 16 18 N -0.62 -33.79 3.40 -692.72 -2.36 -36.14 16 19 C -0.24 -14.07 10.26 84.03 0.86 -13.21 16 20 H 0.08 4.68 7.84 -2.91 -0.02 4.66 16 21 C -0.07 -4.03 5.48 84.86 0.47 -3.57 16 22 N -0.95 -59.70 10.36 21.65 0.22 -59.47 16 23 Si 0.98 47.26 29.56 68.60 2.03 49.29 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 C 0.14 6.26 6.42 86.55 0.56 6.82 16 28 O -0.37 -13.10 9.92 -148.95 -1.48 -14.58 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.13 1.18 6.05 -2.39 -0.01 1.16 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.23 7.67 -2.39 -0.02 1.21 16 35 H 0.12 1.10 7.92 -2.39 -0.02 1.08 16 36 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 37 H 0.05 1.14 7.16 -2.38 -0.02 1.13 16 38 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 0.65 7.84 -2.39 -0.02 0.64 16 44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.09 2.84 6.88 -2.39 -0.02 2.83 16 47 H 0.06 2.64 7.84 -2.39 -0.02 2.62 16 48 H 0.07 2.80 6.08 -2.39 -0.01 2.78 16 49 H 0.00 0.25 7.55 -2.39 -0.02 0.23 16 50 H 0.01 0.39 7.36 -2.39 -0.02 0.37 16 51 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 52 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 53 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 Total: -1.00 -77.44 397.16 2.66 -74.78 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.87 Total: 13.96 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.83 Total: 8.50 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.54 Total: -112.74 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.52 Total: -33.79 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.44 2.66 -74.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071127605.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.831 kcal (2) G-P(sol) polarization free energy of solvation -77.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds