Wall clock time and date at job start Tue Mar 31 2020 21:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.50750 * 2 1 4 4 C 1.52847 * 109.62208 * 240.01445 * 2 1 3 5 5 N 1.47159 * 108.76643 * 187.30698 * 4 2 1 6 6 C 1.34784 * 121.05379 * 231.07607 * 5 4 2 7 7 O 1.21273 * 120.00173 * 4.42478 * 6 5 4 8 8 C 1.50698 * 119.99382 * 184.41689 * 6 5 4 9 9 C 1.53006 * 109.46764 * 202.51539 * 8 6 5 10 10 C 1.53002 * 109.47106 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47153 * 59.99915 * 10 9 8 12 12 C 1.52998 * 109.47114 * 300.00278 * 11 10 9 13 13 C 1.53002 * 109.47337 * 59.99835 * 12 11 10 14 14 C 1.47307 * 117.88412 * 50.80453 * 5 4 2 15 15 C 1.52514 * 108.39243 * 310.85949 * 14 5 4 16 16 C 1.54511 * 110.05503 * 287.92387 * 15 14 5 17 17 C 1.55018 * 101.52294 * 206.90981 * 16 15 14 18 18 N 1.47487 * 104.89770 * 36.37646 * 17 16 15 19 19 C 1.36944 * 125.66007 * 155.99829 * 18 17 16 20 20 H 1.07994 * 119.99723 * 180.02562 * 19 18 17 21 21 C 1.38806 * 120.00082 * 0.02562 * 19 18 17 22 22 N 1.31625 * 120.00042 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47093 * 60.00119 * 23 21 19 25 25 H 1.48502 * 109.47239 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47320 * 300.00223 * 23 21 19 27 27 C 1.47184 * 108.67746 * 335.97905 * 18 17 16 28 28 O 1.42073 * 111.10503 * 50.44046 * 15 14 5 29 29 H 1.09001 * 109.47634 * 299.90566 * 1 2 3 30 30 H 1.09004 * 109.47311 * 59.90412 * 1 2 3 31 31 H 1.09002 * 109.47167 * 179.90431 * 1 2 3 32 32 H 1.09000 * 109.56102 * 67.48748 * 4 2 1 33 33 H 1.09004 * 109.46525 * 307.05757 * 4 2 1 34 34 H 1.08996 * 109.48035 * 322.51356 * 8 6 5 35 35 H 1.08995 * 109.47321 * 60.00201 * 9 8 6 36 36 H 1.08999 * 109.46855 * 300.00144 * 9 8 6 37 37 H 1.08999 * 109.46941 * 300.00413 * 10 9 8 38 38 H 1.09001 * 109.47193 * 179.97438 * 10 9 8 39 39 H 1.09006 * 109.46985 * 60.00041 * 11 10 9 40 40 H 1.08994 * 109.47245 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47250 * 180.02562 * 12 11 10 42 42 H 1.09006 * 109.47001 * 299.99753 * 12 11 10 43 43 H 1.09001 * 109.47193 * 180.02562 * 13 12 11 44 44 H 1.08999 * 109.46941 * 59.99643 * 13 12 11 45 45 H 1.09000 * 109.67832 * 70.58822 * 14 5 4 46 46 H 1.08997 * 109.67860 * 191.09754 * 14 5 4 47 47 H 1.09006 * 111.01835 * 324.97132 * 16 15 14 48 48 H 1.09007 * 111.01728 * 88.85254 * 16 15 14 49 49 H 1.09003 * 110.35752 * 155.23069 * 17 16 15 50 50 H 1.08998 * 110.35926 * 277.52233 * 17 16 15 51 51 H 0.97004 * 119.99641 * 179.97438 * 22 21 19 52 52 H 1.08992 * 109.90727 * 242.14180 * 27 18 17 53 53 H 1.08998 * 109.90899 * 120.87245 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0432 -0.7195 -1.2470 5 7 3.5040 -0.8640 -1.1427 6 6 4.3144 -0.4778 -2.1481 7 8 3.8498 0.0707 -3.1249 8 6 5.7978 -0.7273 -2.0582 9 6 6.5357 0.2477 -2.9780 10 6 8.0418 -0.0061 -2.8872 11 6 8.3439 -1.4425 -3.3191 12 6 7.6061 -2.4175 -2.3994 13 6 6.1000 -2.1637 -2.4901 14 6 4.0527 -1.4383 0.0979 15 6 3.4233 -0.7137 1.2831 16 6 3.9914 0.7192 1.3905 17 6 3.8318 1.0028 2.9061 18 7 4.1092 -0.2874 3.5646 19 6 4.5390 -0.4491 4.8548 20 1 4.7149 -1.4406 5.2451 21 6 4.7487 0.6614 5.6608 22 7 4.5339 1.8698 5.1853 23 14 5.3343 0.4408 7.4209 24 1 6.6455 -0.2564 7.4226 25 1 5.4809 1.7712 8.0642 26 1 4.3428 -0.3677 8.1749 27 6 3.8471 -1.3723 2.6052 28 8 2.0079 -0.6763 1.1670 29 1 -0.3634 0.5124 0.8908 30 1 -0.3634 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0017 32 1 1.7954 -0.1355 -2.1333 33 1 1.5819 -1.7049 -1.3136 34 1 6.1297 -0.5792 -1.0306 35 1 6.3201 1.2709 -2.6706 36 1 6.2038 0.0995 -4.0056 37 1 8.3738 0.1418 -1.8596 38 1 8.5674 0.6882 -3.5428 39 1 8.0118 -1.5904 -4.3468 40 1 9.4168 -1.6231 -3.2549 41 1 7.8216 -3.4407 -2.7068 42 1 7.9382 -2.2696 -1.3718 43 1 5.5744 -2.8580 -1.8346 44 1 5.7679 -2.3115 -3.5177 45 1 3.8133 -2.5006 0.1478 46 1 5.1342 -1.3046 0.1173 47 1 5.0406 0.7469 1.0960 48 1 3.4021 1.4188 0.7977 49 1 4.5510 1.7556 3.2289 50 1 2.8154 1.3297 3.1258 51 1 4.6801 2.6457 5.7487 52 1 3.0448 -2.0099 2.9761 53 1 4.7522 -1.9604 2.4535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071131427.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:49 Heat of formation + Delta-G solvation = -81.634201 kcal Electronic energy + Delta-G solvation = -31818.068381 eV Core-core repulsion = 27882.022250 eV Total energy + Delta-G solvation = -3936.046132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.05182 -40.51256 -38.57675 -37.81147 -35.94772 -34.78024 -33.10026 -32.02371 -31.66034 -31.02783 -29.97108 -27.85096 -27.24615 -25.47055 -24.23734 -23.49204 -23.09349 -21.92411 -21.09857 -20.68046 -19.94346 -18.97567 -18.32312 -17.96630 -17.08382 -16.84402 -16.50372 -16.30934 -15.83015 -15.73459 -15.40530 -15.08638 -14.94260 -14.89506 -14.63040 -14.34358 -14.09691 -13.83796 -13.66570 -13.54572 -13.24109 -13.15821 -13.09281 -13.08637 -12.92921 -12.81697 -12.71963 -12.30953 -12.21403 -12.18253 -12.04861 -11.99506 -11.86393 -11.65020 -11.52247 -11.43663 -11.29318 -11.02324 -10.94139 -10.72704 -10.59922 -9.56587 -8.90203 -7.76078 -5.21045 1.48680 1.50582 1.52148 1.58333 1.80031 2.47724 2.60371 3.31475 3.34634 3.46462 3.63293 3.70738 3.76952 3.77486 3.81702 3.97610 4.00308 4.12556 4.19380 4.25024 4.28903 4.32127 4.44377 4.46019 4.51860 4.54126 4.59858 4.62496 4.69166 4.69597 4.70502 4.81630 4.86838 4.95070 4.96374 5.05481 5.06468 5.11740 5.13307 5.19926 5.25475 5.26216 5.31950 5.36050 5.40044 5.46863 5.56061 5.56894 5.76238 6.24444 6.28108 6.31766 7.04305 7.09915 7.77082 8.41437 9.26192 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.003867 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.622060 B = 7239.273776 C = 8939.927549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.047 0.953 4 C 0.087 3.913 5 N -0.610 5.610 6 C 0.522 3.478 7 O -0.578 6.578 8 C -0.105 4.105 9 C -0.098 4.098 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.116 4.116 13 C -0.102 4.102 14 C 0.101 3.899 15 C 0.105 3.895 16 C -0.151 4.151 17 C 0.168 3.832 18 N -0.622 5.622 19 C -0.237 4.237 20 H 0.087 0.913 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.272 1.272 25 H -0.297 1.297 26 H -0.280 1.280 27 C 0.149 3.851 28 O -0.374 6.374 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.113 0.887 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.073 0.927 50 H -0.025 1.025 51 H 0.246 0.754 52 H 0.030 0.970 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -8.971 -18.074 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.035 4.035 5 N -0.342 5.342 6 C 0.312 3.688 7 O -0.458 6.458 8 C -0.126 4.126 9 C -0.136 4.136 10 C -0.155 4.155 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.140 4.140 14 C -0.022 4.022 15 C 0.064 3.936 16 C -0.189 4.189 17 C 0.042 3.958 18 N -0.348 5.348 19 C -0.366 4.366 20 H 0.105 0.895 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.198 1.198 25 H -0.223 1.223 26 H -0.206 1.206 27 C 0.023 3.977 28 O -0.294 6.294 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.091 0.909 50 H -0.007 1.007 51 H 0.055 0.945 52 H 0.048 0.952 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.519 -8.671 -18.287 20.394 hybrid contribution -0.118 0.731 1.151 1.369 sum 2.401 -7.940 -17.136 19.038 Atomic orbital electron populations 1.21696 0.90458 1.03839 1.03274 1.22546 0.96891 0.95077 0.84611 0.93498 1.22238 0.79932 1.02424 0.98913 1.48261 1.06978 1.62371 1.16631 1.21170 0.89902 0.76324 0.81369 1.90635 1.77886 1.43935 1.33328 1.21447 0.89258 0.99226 1.02687 1.21341 0.95730 0.97393 0.99172 1.21549 0.94045 0.97718 1.02162 1.21561 1.00709 0.93990 0.99436 1.21536 0.93041 1.00015 1.00707 1.21459 0.98217 0.92464 1.01830 1.22343 1.00122 0.98478 0.81290 1.22111 0.81505 0.95120 0.94887 1.23317 1.00819 0.96920 0.97876 1.21557 0.96625 0.89537 0.88047 1.44774 1.78208 1.01886 1.09939 1.19454 1.36251 0.93480 0.87377 0.89505 1.25640 1.02682 0.95018 1.02589 1.70064 1.56337 0.97586 1.36150 0.85110 0.78493 0.76196 0.79275 1.19751 1.22286 1.20634 1.21255 0.98092 0.91062 0.87261 1.87886 1.20277 1.77166 1.44051 0.92523 0.88728 0.90659 0.88582 0.89156 0.88204 0.93151 0.91980 0.91640 0.91026 0.91984 0.90673 0.90215 0.91246 0.90680 0.91950 0.88318 0.86927 0.90469 0.91672 0.90905 1.00687 0.94464 0.95225 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.57 71.98 0.69 -2.33 16 2 C 0.07 1.87 3.16 30.54 0.10 1.97 16 3 H 0.05 1.48 6.13 -2.39 -0.01 1.47 16 4 C 0.09 2.15 5.90 86.20 0.51 2.66 16 5 N -0.61 -15.52 2.92 -819.29 -2.39 -17.91 16 6 C 0.52 13.99 6.84 87.66 0.60 14.59 16 7 O -0.58 -19.16 15.53 -3.01 -0.05 -19.20 16 8 C -0.11 -2.20 1.77 -11.54 -0.02 -2.22 16 9 C -0.10 -2.07 4.70 30.60 0.14 -1.93 16 10 C -0.12 -1.90 5.92 30.60 0.18 -1.72 16 11 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 12 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 13 C -0.10 -1.69 5.18 30.60 0.16 -1.53 16 14 C 0.10 2.47 4.78 86.06 0.41 2.89 16 15 C 0.10 3.50 0.83 -10.22 -0.01 3.50 16 16 C -0.15 -5.76 5.91 31.80 0.19 -5.57 16 17 C 0.17 8.49 5.88 86.88 0.51 9.00 16 18 N -0.62 -31.74 3.40 -692.52 -2.36 -34.09 16 19 C -0.24 -13.07 10.28 84.03 0.86 -12.20 16 20 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 21 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 22 N -0.95 -57.02 10.09 21.65 0.22 -56.81 16 23 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.15 5.87 6.61 86.47 0.57 6.44 16 28 O -0.37 -12.99 9.87 -148.98 -1.47 -14.46 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 2.43 7.06 -2.39 -0.02 2.41 16 33 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.10 2.02 6.17 -2.39 -0.01 2.01 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.43 7.88 -2.39 -0.02 1.41 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 1.14 7.88 -2.39 -0.02 1.12 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.11 2.46 5.33 -2.39 -0.01 2.44 16 47 H 0.08 2.76 7.86 -2.38 -0.02 2.74 16 48 H 0.06 2.44 5.98 -2.38 -0.01 2.43 16 49 H 0.07 4.18 5.89 -2.39 -0.01 4.16 16 50 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 51 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 52 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 53 H 0.06 2.23 7.79 -2.39 -0.02 2.21 16 Total: -1.00 -70.06 393.51 2.58 -67.48 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.87 Total: 20.36 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.72 Total: 7.43 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -4.53 Total: -108.81 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.52 Total: -33.66 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.06 2.58 -67.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071131427.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.153 kcal (2) G-P(sol) polarization free energy of solvation -70.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds